Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 0.0e+00 1343.2 672 100.0
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 2.1e-267 925.6 752 64.6
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.1e-258 896.7 726 64.6
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 6.0e-246 854.4 729 61.5
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 1.8e-245 852.8 730 61.2
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 3.9e-245 851.7 730 61.1
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 5.1e-245 851.3 745 60.1
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 3.1e-242 842.0 733 60.6
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 5.3e-242 841.3 754 59.2
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 6.9e-242 840.9 728 60.9
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 6.9e-242 840.9 754 57.8
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 2.0e-241 839.3 708 61.9
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 7.6e-241 837.4 754 58.9
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.3e-240 836.6 701 62.9
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.1e-239 833.6 701 62.6
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 1.9e-239 832.8 729 59.7
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 3.6e-238 828.6 753 57.1
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 7.9e-238 827.4 730 59.6
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 6.7e-237 824.3 685 62.6
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 4.3e-236 821.6 754 57.3
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 2.8e-235 818.9 747 57.2
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 4.8e-235 818.1 749 57.4
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 8.2e-235 817.4 727 58.7
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 1.8e-234 816.2 696 61.2
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 1.8e-234 816.2 755 56.8
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 6.9e-234 814.3 756 55.8
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.5e-233 813.1 755 57.4
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 4.5e-233 811.6 756 56.3
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 5.9e-233 811.2 692 61.0
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 1.0e-232 810.4 707 59.3
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 2.2e-232 809.3 753 56.0
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 3.8e-232 808.5 756 56.9
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 5.0e-232 808.1 742 57.8
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 1.4e-231 806.6 668 61.4
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.5e-231 805.8 751 57.1
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 5.5e-231 804.7 759 57.3
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 7.2e-231 804.3 737 56.4
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 7.2e-231 804.3 755 55.2
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 1.6e-230 803.1 754 55.2
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 1.6e-230 803.1 759 56.7
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 2.7e-230 802.4 756 55.3
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 2.7e-230 802.4 707 58.4
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 3.6e-230 802.0 769 56.0
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 6.1e-230 801.2 711 58.5
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 7.9e-230 800.8 710 59.0
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.9e-229 798.5 764 54.7
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 3.9e-229 798.5 755 56.7
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.1e-229 798.1 741 56.8
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 5.1e-229 798.1 741 56.8
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.5e-228 796.6 709 58.7
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 2.6e-228 795.8 700 59.1
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.7e-227 793.1 711 57.7
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 2.8e-227 792.3 711 57.4
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 3.7e-227 792.0 737 56.9
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 6.3e-227 791.2 738 56.1
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.4e-226 790.0 765 54.0
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 1.4e-226 790.0 744 57.8
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 1.8e-226 789.6 718 57.4
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 2.4e-226 789.3 692 59.5
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 4.1e-226 788.5 740 56.4
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 6.9e-226 787.7 752 55.6
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.5e-225 786.6 681 58.1
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 2.6e-225 785.8 689 58.9
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 3.4e-225 785.4 743 55.5
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 4.5e-225 785.0 681 58.3
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 5.9e-225 784.6 748 56.7
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 1.3e-224 783.5 679 58.3
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 5.0e-224 781.6 709 56.8
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 8.5e-224 780.8 768 54.4
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.5e-223 779.2 753 54.2
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 9.4e-223 777.3 681 57.9
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 1.2e-222 776.9 708 55.9
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.6e-222 776.5 680 57.9
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 1.6e-222 776.5 744 56.7
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 2.1e-222 776.2 681 57.9
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 2.1e-222 776.2 738 55.6
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 3.0e-221 772.3 761 53.7
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 3.9e-221 771.9 767 54.4
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 6.7e-221 771.2 737 55.5
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 3.7e-219 765.4 738 53.9
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 4.8e-219 765.0 708 57.2
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 7.7e-217 757.7 798 52.0
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 1.7e-211 740.0 760 53.0
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 3.1e-210 735.7 709 55.0
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 3.8e-208 728.8 709 54.2
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 8.8e-205 717.6 996 43.1
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 2.8e-203 712.6 675 54.5
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 3.2e-199 699.1 692 53.9
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 7.7e-193 677.9 857 44.9
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 2.9e-192 676.0 937 42.8
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 6.6e-192 674.9 655 55.1
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 1.5e-191 673.7 594 59.1
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 4.3e-191 672.2 740 51.4
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 9.5e-191 671.0 637 57.0
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 5.2e-181 638.6 749 47.9
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 1.0e-176 624.4 542 60.7
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 2.5e-167 593.2 681 48.3
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 7.6e-164 581.6 455 64.8
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 3.5e-153 546.2 515 56.5
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.1e-149 533.1 600 49.3
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 1.2e-148 531.2 731 43.6
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 1.2e-145 521.2 694 43.2
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 1.6e-145 520.8 772 40.7
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 2.0e-124 450.7 389 59.9
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 1.5e-116 424.5 382 58.9
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.5e-115 418.7 444 49.8
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.0e-104 383.6 440 47.5
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 1.1e-103 381.7 438 47.7
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 3.7e-102 376.7 670 39.1
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.5e-98 364.0 446 45.3
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 2.2e-78 297.7 296 54.4
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.1e-73 281.2 329 48.6
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.3e-72 277.7 202 67.8
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.3e-67 261.9 267 52.8
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 1.8e-64 251.5 1036 23.4
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 5.2e-64 250.0 210 61.4
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 1.2e-60 238.8 259 51.7
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 1.0e-59 235.7 647 30.6
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.0e-56 223.8 256 44.9
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 3.2e-53 214.2 335 41.8
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 5.1e-51 206.8 158 62.0
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 6.6e-51 206.5 161 58.4
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 4.9e-46 190.3 158 57.6
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 3.2e-45 187.6 226 47.3
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 6.9e-40 169.9 124 68.5
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 2.2e-30 138.3 120 60.8
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 6.4e-30 136.7 233 40.8
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 3.9e-27 127.5 224 37.1
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.4e-21 108.2 100 54.0
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 6.0e-20 103.6 128 49.2
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 8.7e-19 99.8 103 49.5
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 5.6e-18 97.1 79 68.4
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 7.4e-18 96.7 192 30.2
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 1.4e-13 82.4 127 40.2
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 7.9e-12 76.6 164 31.1
Pp3c2_27000 Physcomitrium patens HOM05D005074 ORTHO05D034455 1.5e-10 72.4 169 26.0
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 5.7e-10 70.5 166 29.5
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.8e-09 68.2 68 52.9
Cfa025975 Carpinus fangiana HOM05D005074 ORTHO05D006853 1.4e-08 65.9 193 29.0
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 4.5e-07 60.8 55 52.7
Cfa000351 Carpinus fangiana HOM05D007621 ORTHO05D009631 1.7e-06 58.9 179 28.5
EL10Ac2g02628 Beta vulgaris HOM05D003873 ORTHO05D004127 8.5e-06 56.6 122 35.2


User provided reference genes

Program Settings