Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 2490.3 1317 100.0
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 2027.3 1317 80.3
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1910.2 1303 77.4
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1853.6 1317 74.6
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1842.0 1317 72.7
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1841.2 1317 73.1
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1824.3 1317 72.1
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1818.1 1303 72.8
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1794.6 1317 70.9
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1774.6 1324 71.7
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1771.5 1317 69.9
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1751.5 1317 69.9
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1748.0 1317 69.8
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1744.2 1317 69.8
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1741.1 1317 69.2
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1727.2 1317 68.3
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1726.1 1317 68.4
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1721.8 1317 68.9
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1718.0 1318 69.5
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1711.0 1317 68.6
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1709.5 1317 67.6
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1708.3 1317 67.4
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1706.4 1317 67.4
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1704.9 1317 67.7
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1701.4 1317 68.8
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1700.6 1317 68.6
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1699.5 1317 68.0
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1694.5 1317 66.5
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1686.8 1317 67.4
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1684.8 1365 66.6
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1681.0 1317 68.3
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1676.4 1317 67.1
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1676.0 1317 66.9
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1666.0 1436 63.1
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1664.8 1549 60.2
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1663.7 1317 67.0
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1661.7 1317 66.1
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1661.4 1317 66.1
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1657.5 1317 67.4
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1653.6 1317 66.3
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1648.6 1317 65.9
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1645.9 1317 67.2
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1639.0 1343 64.9
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1622.4 1317 65.2
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1611.3 1317 64.8
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1609.0 1318 64.6
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1607.4 1325 65.2
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1605.5 1261 68.6
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1604.7 1370 63.6
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1604.7 1317 64.5
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1604.0 1303 65.6
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1602.0 1317 64.7
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1595.5 1340 64.0
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1594.7 1317 64.8
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1591.2 1332 64.1
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1590.5 1332 64.0
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1588.2 1359 63.1
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1580.5 1317 65.5
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1578.9 1317 63.9
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1574.3 1210 68.4
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1560.4 1210 67.6
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1555.0 1317 63.3
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 0.0e+00 1548.5 1401 61.0
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1546.2 1317 63.5
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1535.0 1318 63.3
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1535.0 1318 63.5
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1534.2 1303 62.9
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1533.9 1318 63.4
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1530.4 1317 62.2
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1523.1 1317 62.6
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1522.3 1337 62.2
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1512.7 1254 64.1
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1471.8 1317 60.8
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 0.0e+00 1459.1 1370 59.6
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1438.3 1303 59.9
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 1226.1 1317 51.0
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 0.0e+00 1219.1 1059 63.7
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1105.5 1317 47.8
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 0.0e+00 1082.8 902 66.1
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 8.9e-310 1067.4 1063 54.4
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 3.5e-306 1055.4 1313 46.5
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 1.2e-298 1030.4 1025 57.5
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 5.4e-283 978.4 1316 44.5
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 6.6e-281 971.5 888 58.2
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.8e-279 966.1 759 66.9
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 1.2e-277 960.7 743 67.0
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 2.2e-260 903.3 1258 44.3
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 3.2e-259 899.4 1102 47.5
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 2.0e-253 880.2 767 60.6
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 7.9e-250 868.2 761 60.3
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 8.8e-241 838.2 669 67.1
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 2.5e-235 820.1 631 67.8
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 3.2e-235 819.7 631 67.8
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.0e-233 814.7 787 57.6
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 3.3e-232 809.7 725 60.4
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 2.1e-226 790.4 728 58.2
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 1.1e-222 778.1 1269 39.3
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.2e-215 753.8 594 67.7
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 2.2e-215 753.8 594 67.7
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.5e-208 728.8 631 62.0
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 4.1e-206 723.0 558 68.6
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 6.6e-196 689.1 734 53.7
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 2.2e-183 647.5 594 60.9
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 9.9e-176 622.1 1378 34.3
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 1.5e-155 555.1 350 81.7
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 9.6e-147 525.8 375 73.1
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 6.5e-143 513.1 1390 30.1
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.2e-142 510.8 383 70.8
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 7.4e-139 499.6 1341 29.8
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 5.3e-137 493.4 522 52.7
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 5.3e-137 493.4 294 85.4
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 2.9e-135 487.6 436 61.9
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 6.9e-129 466.5 458 57.2
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 4.4e-123 447.2 1348 28.6
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 2.9e-119 434.5 244 89.3
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.5e-115 419.9 222 93.7
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 1.3e-114 419.1 264 81.8
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 4.5e-112 410.6 224 90.2
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 4.4e-99 367.5 853 34.2
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 8.3e-98 363.2 391 50.1
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.1e-97 362.8 317 62.8
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 1.9e-94 352.1 187 93.6
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 3.2e-89 334.7 223 77.6
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.8e-84 318.9 408 45.3
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 4.0e-76 291.2 225 65.8
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 5.6e-62 244.2 126 95.2
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 4.3e-54 218.0 140 82.1
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 7.6e-51 207.2 139 80.6
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 3.3e-46 191.8 167 59.9
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 4.5e-43 181.4 170 57.6
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 1.3e-37 163.3 87 93.1
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 7.6e-35 154.1 106 76.4
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 1.0e-31 143.7 72 90.3
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 5.1e-31 141.4 114 63.2
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 4.8e-29 134.8 173 46.2
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 7.6e-27 127.5 225 40.0
SHI26068 Sapria himalayana HOM05D005045 ORTHO05D000014 7.9e-24 117.5 141 43.3
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 2.5e-22 112.5 100 63.0
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 2.8e-21 109.0 64 84.4
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 5.3e-20 104.8 64 78.1
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 2.0e-19 102.8 106 56.6
QL10p041126 Quercus lobata HOM05D005045 ORTHO05D006386 1.7e-18 99.8 90 61.1
ECA233G3942 Erigeron canadensis HOM05D005045 ORTHO05D006386 5.1e-15 88.2 265 29.4
BcaC05g28670 Brassica carinata HOM05D005045 ORTHO05D006386 3.7e-13 82.0 77 58.4
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 3.7e-13 82.0 53 73.6
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 1.9e-09 69.7 63 63.5
VMungo0331G0368 Vigna mungo HOM05D005045 ORTHO05D006386 4.2e-09 68.6 128 37.5
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 4.7e-08 65.1 61 63.9
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 6.1e-08 64.7 56 67.9
VMungo0251G0925 Vigna mungo HOM05D005045 ORTHO05D005612 1.8e-07 63.2 87 43.7
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 2.0e-06 59.7 33 87.9


User provided reference genes

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