Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 0.0e+00 1577.8 812 100.0
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 0.0e+00 1213.4 817 76.4
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 0.0e+00 1102.4 820 69.0
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 0.0e+00 1083.2 927 61.8
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.0e-307 1058.9 821 66.7
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 4.2e-302 1041.2 802 66.0
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 7.0e-297 1023.8 819 65.7
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 1.5e-296 1022.7 820 64.3
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 3.8e-295 1018.1 817 64.6
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 6.5e-295 1017.3 816 65.0
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 6.5e-295 1017.3 817 64.6
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 1.2e-293 1013.1 819 64.1
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.6e-293 1012.7 822 64.1
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 6.1e-293 1010.7 814 64.6
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 1.8e-292 1009.2 817 64.3
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 3.0e-292 1008.4 825 63.3
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 4.0e-292 1008.1 816 63.8
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 5.7e-291 1004.2 814 63.0
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 1.0e-287 993.4 814 62.9
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 1.3e-287 993.0 813 63.7
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 4.2e-286 988.0 815 63.1
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 5.5e-286 987.6 819 64.5
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 6.1e-285 984.2 823 62.5
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 8.8e-284 980.3 820 63.7
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 4.4e-283 978.0 817 62.1
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 2.8e-282 975.3 817 62.5
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 6.3e-282 974.2 842 61.3
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.1e-281 973.4 817 61.2
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 4.1e-281 971.5 822 61.9
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 5.4e-281 971.1 819 62.4
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 1.2e-280 969.9 832 60.8
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 7.7e-280 967.2 840 60.5
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 1.0e-279 966.8 819 61.5
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 9.4e-278 960.3 818 60.3
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.6e-277 959.5 738 67.3
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 2.1e-277 959.1 818 61.4
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 6.1e-277 957.6 817 60.8
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 8.0e-277 957.2 828 59.4
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.4e-275 951.8 817 60.7
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.5e-275 950.7 817 61.0
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 1.7e-274 949.5 819 60.8
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 1.1e-273 946.8 832 59.3
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 1.2e-272 943.3 805 59.8
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.9e-271 938.7 817 60.5
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 8.6e-271 937.2 813 61.0
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 8.6e-271 937.2 799 59.7
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 1.5e-270 936.4 820 59.1
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 1.5e-270 936.4 805 60.7
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 4.3e-270 934.9 815 60.7
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 9.5e-270 933.7 803 59.9
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.2e-269 933.3 807 59.4
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 6.8e-268 927.5 803 59.4
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 2.2e-266 922.5 820 58.2
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 3.7e-266 921.8 819 61.3
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 3.2e-265 918.7 807 58.7
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 4.1e-265 918.3 817 58.6
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 1.6e-264 916.4 800 59.8
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 2.7e-264 915.6 846 57.4
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 5.9e-264 914.4 761 60.6
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 1.3e-263 913.3 736 65.2
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.5e-262 909.8 831 57.0
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.2e-261 906.7 813 57.7
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 2.1e-261 906.0 817 58.0
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 1.0e-260 903.7 825 58.3
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 6.8e-260 901.0 824 58.5
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 6.8e-260 901.0 817 59.2
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 5.8e-259 897.9 795 59.2
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 9.8e-259 897.1 879 55.2
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 6.4e-258 894.4 819 58.1
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.4e-257 893.3 826 58.0
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.9e-257 892.9 820 57.2
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 2.4e-257 892.5 799 58.7
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 4.1e-257 891.7 818 57.0
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 2.0e-256 889.4 820 56.8
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.0e-255 887.1 817 56.4
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 2.5e-254 882.5 819 57.6
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 7.3e-254 880.9 818 56.4
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.2e-253 880.2 817 55.8
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 8.9e-252 874.0 843 54.6
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.6e-245 853.2 825 58.4
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 1.5e-243 846.7 820 55.4
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 3.5e-240 835.5 818 56.7
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 3.9e-239 832.0 819 54.8
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 5.6e-238 828.2 738 57.7
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 8.1e-237 824.3 862 54.8
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 1.0e-231 807.4 827 53.8
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.9e-222 776.5 795 53.5
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 9.3e-217 757.7 783 52.0
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 2.3e-215 753.1 598 65.7
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 9.0e-212 741.1 615 61.6
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-209 734.2 621 62.5
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.1e-209 734.2 621 62.5
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 5.3e-204 715.3 619 60.9
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 8.5e-202 708.0 624 60.7
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.3e-197 694.1 714 51.0
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 5.5e-193 678.7 623 57.9
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 2.9e-178 629.8 772 44.8
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 9.4e-177 624.8 822 43.2
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 2.3e-167 593.6 726 45.6
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.8e-159 567.4 499 62.3
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 1.3e-157 561.2 402 68.9
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 7.0e-156 555.4 547 55.0
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 6.6e-138 495.7 556 47.7
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.5e-134 482.3 343 68.2
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 7.5e-134 482.3 471 53.7
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.1e-132 475.7 340 68.2
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 6.0e-131 472.6 399 65.7
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 6.6e-130 469.2 335 66.0
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 2.1e-128 464.2 781 37.0
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.1e-124 451.8 398 61.8
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 4.1e-124 449.9 796 37.1
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.4e-111 408.3 779 34.9
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 5.6e-97 359.8 478 45.8
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 6.0e-91 339.7 466 41.2
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 7.2e-84 316.2 297 56.6
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 7.4e-81 306.2 246 61.4
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 5.9e-78 296.6 254 60.2
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.1e-75 288.1 183 73.8
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 3.1e-71 274.2 856 28.0
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 9.1e-71 272.7 383 46.0
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.1e-68 265.8 320 45.6
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.2e-67 262.3 305 46.9
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.4e-57 227.3 196 57.7
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.8e-56 224.6 144 74.3
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 5.3e-55 220.3 232 48.7
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.8e-47 195.3 158 61.4
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 8.9e-42 176.4 178 53.9
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 8.3e-40 169.9 211 42.7
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.4e-39 168.3 172 55.8
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.3e-37 162.5 172 54.7
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 1.9e-36 158.7 247 44.5
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.5e-36 158.3 216 44.0
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.3e-36 157.9 153 54.9
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 3.0e-21 108.2 158 43.0
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 1.2e-19 102.8 795 22.1
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 9.9e-17 93.2 109 43.1
Cre06.g278900 Chlamydomonas reinhardtii HOM05D005539 ORTHO05D006644 8.1e-11 73.6 324 22.8
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.8e-10 72.4 43 74.4
C03p17190 Brassica napus HOM05D001640 ORTHO05D001612 2.0e-09 68.9 71 50.7
BolC3t14133H Brassica oleracea HOM05D001640 ORTHO05D001612 1.4e-07 62.8 71 47.9
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 1.6e-06 59.3 36 69.4


User provided reference genes

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