Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 1.6e-106 389.4 199 100.0
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 6.0e-93 344.4 199 85.9
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 1.3e-74 283.5 212 72.6
SGA_v2.0_scaffold55G19785 Striga asiatica HOM05D005275 ORTHO05D006435 4.5e-72 275.0 175 81.1
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 1.2e-69 266.9 200 70.0
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 6.7e-68 261.2 204 68.6
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 6.7e-68 261.2 214 66.4
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 8.7e-68 260.8 207 66.2
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 9.7e-67 257.3 210 65.7
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.6e-66 256.5 207 66.2
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 4.1e-65 251.9 214 64.0
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 5.3e-65 251.5 213 62.9
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 6.9e-65 251.1 203 67.0
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 1.0e-63 247.3 219 62.6
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 2.9e-63 245.7 210 61.9
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 5.0e-63 245.0 216 60.6
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 1.4e-62 243.4 210 62.9
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 5.5e-62 241.5 247 55.1
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 9.4e-62 240.7 210 60.5
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 9.4e-62 240.7 221 60.2
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 2.7e-61 239.2 216 61.1
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 3.6e-61 238.8 210 62.4
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 6.1e-61 238.0 219 58.9
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 1.0e-60 237.3 178 68.5
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 1.0e-60 237.3 194 64.4
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.8e-60 236.5 211 58.8
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 1.8e-60 236.5 215 58.6
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.3e-60 236.1 188 66.5
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 3.0e-60 235.7 217 59.9
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 3.0e-60 235.7 220 58.2
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 3.0e-60 235.7 220 58.2
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 6.7e-60 234.6 225 55.6
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 6.7e-60 234.6 225 55.6
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 2.6e-59 232.6 205 61.5
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 3.3e-59 232.3 216 58.8
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 4.4e-59 231.9 217 59.0
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 5.7e-59 231.5 210 61.0
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 9.7e-59 230.7 210 61.0
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 9.7e-59 230.7 191 61.3
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 1.3e-58 230.3 193 63.2
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 2.2e-58 229.6 191 60.7
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.2e-58 229.6 235 56.2
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 2.8e-58 229.2 219 58.0
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 2.8e-58 229.2 260 52.7
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 6.3e-58 228.0 194 63.4
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 6.3e-58 228.0 218 55.5
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.1e-57 225.7 219 57.1
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 3.1e-57 225.7 194 61.3
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 3.1e-57 225.7 223 56.5
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 4.1e-57 225.3 194 62.9
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 5.3e-57 224.9 222 58.1
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 5.3e-57 224.9 194 61.9
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 5.3e-57 224.9 193 62.2
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 6.9e-57 224.6 193 62.2
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 6.9e-57 224.6 193 62.2
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 6.9e-57 224.6 193 62.2
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 6.9e-57 224.6 220 58.2
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 6.9e-57 224.6 186 63.4
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 9.1e-57 224.2 193 62.2
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 9.1e-57 224.2 219 56.6
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 9.1e-57 224.2 220 57.7
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 1.2e-56 223.8 193 62.2
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 1.2e-56 223.8 247 50.6
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 4.5e-56 221.9 193 61.1
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 4.5e-56 221.9 193 61.1
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 4.5e-56 221.9 193 61.7
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.7e-56 221.1 220 56.8
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.7e-56 221.1 220 56.8
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.7e-56 221.1 220 56.8
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.0e-55 220.7 193 61.1
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 1.7e-55 219.9 220 57.7
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.7e-55 219.9 220 57.3
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.7e-55 219.9 220 56.4
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 2.2e-55 219.5 224 58.0
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 2.2e-55 219.5 219 54.8
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.9e-55 219.2 194 60.8
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-55 219.2 220 56.4
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-55 219.2 220 56.4
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.9e-55 219.2 220 56.4
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 3.8e-55 218.8 193 60.6
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 3.8e-55 218.8 223 58.3
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 5.0e-55 218.4 197 60.4
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 5.0e-55 218.4 217 54.8
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 6.5e-55 218.0 194 59.8
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 6.5e-55 218.0 220 55.9
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.5e-55 218.0 220 56.4
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.1e-54 217.2 218 55.5
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.4e-54 216.9 264 50.4
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 1.4e-54 216.9 194 60.3
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 1.9e-54 216.5 219 54.8
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.9e-54 216.5 213 55.4
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.9e-54 216.5 249 51.4
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 3.2e-54 215.7 206 60.2
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 5.5e-54 214.9 207 58.5
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 7.2e-54 214.5 201 58.7
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 9.4e-54 214.2 206 60.2
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 9.4e-54 214.2 219 53.9
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 1.2e-53 213.8 206 60.7
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 2.1e-53 213.0 196 60.7
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 3.6e-53 212.2 196 60.2
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 7.9e-53 211.1 201 58.2
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 7.9e-53 211.1 209 57.9
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 1.0e-52 210.7 196 59.2
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 1.0e-52 210.7 208 58.7
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 1.8e-52 209.9 219 53.9
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 2.3e-52 209.5 206 58.7
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 3.9e-52 208.8 225 55.1
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 6.7e-52 208.0 201 57.7
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 6.7e-52 208.0 221 52.9
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 8.8e-52 207.6 193 60.6
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 8.8e-52 207.6 234 50.9
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.0e-51 206.5 186 59.1
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 7.4e-51 204.5 211 55.5
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 2.8e-50 202.6 223 53.8
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 2.8e-50 202.6 194 60.8
unitig_62.g23847 Utricularia gibba HOM05D002066 ORTHO05D001617 3.7e-50 202.2 147 71.4
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 8.2e-50 201.1 214 50.5
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 5.3e-49 198.4 189 55.6
CDE02G4591 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 1.1e-46 190.7 174 62.6
Gohir.A07G020100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.5e-46 190.3 164 63.4
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 1.6e-45 186.8 261 43.7
FAN03G2656 Fragaria x ananassa HOM05D005626 ORTHO05D007032 2.0e-43 179.9 167 59.3
Hma1.2p1_1507F.1_g287680 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 3.1e-41 172.6 133 69.2
PGSC0003DMG400005324 Solanum tuberosum HOM05D005275 ORTHO05D006435 3.1e-41 172.6 170 54.7
Sc20g0002940 Simmondsia chinensis HOM05D005275 ORTHO05D006435 4.7e-37 158.7 134 63.4
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 2.3e-36 156.4 325 36.3
Gohir.A10G000100 Gossypium hirsutum HOM05D005275 ORTHO05D006435 6.8e-36 154.8 136 62.5
BcaB05g22010 Brassica carinata HOM05D005626 ORTHO05D007372 5.7e-35 151.8 120 67.5
Duzib128G1952 Durio zibethinus HOM05D005275 ORTHO05D006435 1.7e-34 150.2 137 64.2
FvH4_7g32000 Fragaria vesca HOM05D005275 ORTHO05D006435 2.2e-34 149.8 138 60.9
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 4.8e-34 148.7 118 65.3
Aa31LG3G9400 Aethionema arabicum HOM05D005275 ORTHO05D006435 6.3e-34 148.3 113 69.9
Dinv21061 Davidia involucrata HOM05D005275 ORTHO05D006435 1.1e-33 147.5 99 76.8
VMungo1383G0294 Vigna mungo HOM05D005275 ORTHO05D006435 1.6e-32 143.7 141 58.9
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.0e-31 138.7 148 54.7
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 8.0e-29 131.3 148 51.4
Ciclev10024016m.g Citrus clementina HOM05D005275 ORTHO05D006435 7.5e-27 124.8 90 66.7
Pp3c9_14000 Physcomitrium patens HOM05D005275 ORTHO05D006435 1.7e-26 123.6 175 44.0
CBR_g30099 Chara braunii HOM05D005275 ORTHO05D006435 7.0e-25 118.2 197 36.5
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 3.8e-23 112.5 171 36.8
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.9e-22 110.2 174 38.5
SEGI_07593 Sequoiadendron giganteum HOM05D005275 ORTHO05D006435 1.2e-21 107.5 91 61.5
Sc21g0003940 Simmondsia chinensis HOM05D007402 ORTHO05D003673 4.7e-21 105.5 126 50.0
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 4.4e-19 99.0 142 46.5
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 1.6e-16 90.5 85 55.3
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 3.5e-16 89.4 101 48.5
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 1.1e-12 77.8 62 58.1
AagrBONN_evm.TU.Sc2ySwM_228.762 Anthoceros agrestis HOM05D005275 ORTHO05D006435 3.4e-11 72.8 130 38.5
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 1.1e-09 67.8 54 61.1
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 1.4e-09 67.4 168 28.6
MCO07G577 Micromonas commoda HOM05D005275 ORTHO05D006435 1.9e-09 67.0 173 31.8
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 5.0e-07 58.9 207 25.6
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 8.6e-07 58.2 161 27.3
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 7.3e-06 55.1 50 52.0
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 9.5e-06 54.7 161 28.6
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 9.5e-06 54.7 148 28.4


User provided reference genes

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