Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 9.6e-46 186.4 91 100.0
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 2.4e-44 181.8 91 94.5
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 1.2e-43 179.5 91 93.4
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 1.2e-43 179.5 91 93.4
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.6e-43 178.3 91 93.4
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 2.6e-43 178.3 91 93.4
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 9.9e-43 176.4 91 92.3
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 3.8e-42 174.5 89 93.3
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 4.9e-42 174.1 89 94.4
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 8.4e-42 173.3 91 91.2
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.1e-41 172.9 89 94.4
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 1.1e-41 172.9 89 94.4
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 1.1e-41 172.9 91 91.2
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 1.4e-41 172.6 89 93.3
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.4e-41 172.6 88 90.9
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 1.4e-41 172.6 89 94.4
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 1.9e-41 172.2 89 92.1
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.9e-41 172.2 89 91.0
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 1.9e-41 172.2 89 93.3
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 1.9e-41 172.2 89 92.1
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 2.4e-41 171.8 95 90.5
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 3.2e-41 171.4 89 92.1
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 3.2e-41 171.4 95 89.5
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 3.2e-41 171.4 89 92.1
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 4.2e-41 171.0 89 92.1
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 5.4e-41 170.6 89 92.1
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 5.4e-41 170.6 89 92.1
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 7.1e-41 170.2 89 93.3
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 7.1e-41 170.2 89 92.1
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 7.1e-41 170.2 89 92.1
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 7.1e-41 170.2 89 92.1
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 7.1e-41 170.2 95 89.5
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 1.2e-40 169.5 86 93.0
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.2e-40 169.5 86 93.0
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.2e-40 169.5 86 93.0
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 1.2e-40 169.5 86 93.0
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.2e-40 169.5 86 95.3
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 1.6e-40 169.1 95 88.4
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 1.6e-40 169.1 86 94.2
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.6e-40 169.1 89 91.0
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.6e-40 169.1 87 92.0
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 2.7e-40 168.3 95 87.4
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.7e-40 168.3 89 91.0
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 4.6e-40 167.5 86 93.0
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 4.6e-40 167.5 86 93.0
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 6.0e-40 167.2 89 89.9
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 6.0e-40 167.2 89 89.9
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 6.0e-40 167.2 84 95.2
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 7.9e-40 166.8 86 91.9
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 7.9e-40 166.8 98 85.7
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 1.0e-39 166.4 87 92.0
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.3e-39 165.2 90 91.1
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.3e-39 165.2 83 94.0
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 2.3e-39 165.2 89 87.6
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 3.0e-39 164.9 95 85.3
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 3.9e-39 164.5 87 89.7
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 1.9e-38 162.2 89 87.6
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 1.9e-38 162.2 89 87.6
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 2.5e-38 161.8 85 91.8
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.3e-37 159.5 89 86.5
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.3e-37 159.5 89 87.6
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 1.6e-37 159.1 95 81.1
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.6e-37 159.1 89 86.5
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.1e-37 158.7 89 86.5
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 2.8e-37 158.3 89 84.3
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 2.8e-37 158.3 89 84.3
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 3.7e-37 157.9 89 84.3
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 4.8e-37 157.5 86 88.4
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 4.8e-37 157.5 89 86.5
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 6.2e-37 157.1 89 84.3
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 1.1e-36 156.4 89 84.3
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 1.1e-36 156.4 89 84.3
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 1.1e-36 156.4 89 84.3
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 1.1e-36 156.4 89 84.3
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.1e-36 154.8 113 70.8
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 4.0e-36 154.5 89 82.0
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 5.3e-36 154.1 90 80.0
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 6.9e-36 153.7 84 88.1
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 6.9e-36 153.7 84 88.1
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 6.9e-36 153.7 84 88.1
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 6.9e-36 153.7 84 88.1
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 6.9e-36 153.7 92 80.4
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.2e-35 152.9 89 83.1
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.2e-35 152.9 89 83.1
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 2.0e-35 152.1 86 80.2
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 3.4e-35 151.4 84 86.9
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 4.5e-35 151.0 90 78.9
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 4.5e-35 151.0 90 78.9
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 9.9e-35 149.8 90 77.8
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 1.3e-34 149.4 89 79.8
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 1.7e-34 149.1 80 90.0
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 1.7e-34 149.1 91 73.6
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.7e-34 149.1 86 80.2
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.7e-34 149.1 89 78.7
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 2.2e-34 148.7 85 81.2
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 4.9e-34 147.5 84 84.5
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 1.4e-33 146.0 80 87.5
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 9.3e-33 143.3 90 75.6
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 7.9e-32 140.2 71 97.2
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 1.3e-29 132.9 81 77.8
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 2.1e-29 132.1 79 88.6
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 2.8e-29 131.7 64 95.3
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 4.0e-28 127.9 83 77.1
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 6.9e-28 127.1 69 89.9
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 2.6e-27 125.2 69 88.4
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 5.8e-27 124.0 66 90.9
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.0e-26 123.2 91 70.3
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 1.0e-26 123.2 91 70.3
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 2.2e-26 122.1 75 80.0
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 2.2e-26 122.1 69 85.5
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 2.9e-26 121.7 73 78.1
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 8.4e-26 120.2 71 78.9
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.4e-25 119.4 90 68.9
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 1.2e-24 116.3 67 77.6
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 1.6e-24 115.9 66 84.8
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.0e-23 113.2 66 81.8
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 3.0e-23 111.7 69 76.8
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.1e-22 109.8 89 65.2
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 9.0e-20 100.1 90 51.1
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.2e-19 99.8 90 58.9
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 1.2e-19 99.8 83 54.2
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 3.2e-17 91.7 45 91.1
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.1e-16 89.0 54 87.0
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.0e-15 86.7 53 79.2
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 1.5e-14 82.8 90 46.7
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 1.7e-13 79.3 40 90.0
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 4.1e-12 74.7 50 66.0
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 5.3e-12 74.3 42 85.7


User provided reference genes

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