Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.0e-116 423.3 200 100.0
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 3.3e-83 312.0 202 72.8
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.5e-75 286.6 200 69.0
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.6e-75 285.8 200 68.5
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 3.3e-75 285.4 199 68.8
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 1.3e-74 283.5 199 68.3
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 2.6e-72 275.8 199 61.3
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 2.6e-72 275.8 199 67.3
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 4.5e-72 275.0 199 61.8
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 7.7e-72 274.2 199 66.3
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 3.8e-71 271.9 200 65.0
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 5.0e-71 271.6 200 63.5
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 6.5e-71 271.2 199 65.8
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 3.2e-70 268.9 199 62.3
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 7.2e-70 267.7 199 66.3
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 9.4e-70 267.3 193 63.7
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 2.7e-69 265.8 199 61.8
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 3.6e-69 265.4 221 60.2
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 7.9e-69 264.2 205 63.9
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.0e-68 263.8 199 64.3
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.8e-68 263.1 200 63.5
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 3.9e-68 261.9 235 57.0
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 5.2e-68 261.5 199 63.3
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 1.1e-67 260.4 199 61.8
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 2.0e-67 259.6 207 62.8
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 5.7e-67 258.1 207 62.8
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 7.4e-67 257.7 199 60.3
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 1.3e-66 256.9 199 60.3
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 2.8e-66 255.8 199 61.8
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 6.3e-66 254.6 199 61.8
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 6.3e-66 254.6 201 62.2
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 8.2e-66 254.2 202 58.9
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.1e-65 253.8 199 61.8
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 3.1e-65 252.3 207 61.4
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 5.3e-65 251.5 207 60.9
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 1.6e-64 250.0 199 57.3
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.6e-64 250.0 185 64.9
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.6e-64 250.0 259 50.6
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 2.0e-64 249.6 200 61.5
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 2.6e-64 249.2 206 61.2
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.6e-64 249.2 207 60.4
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 2.6e-64 249.2 211 59.2
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 3.5e-64 248.8 201 58.2
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 5.9e-64 248.1 199 58.3
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.3e-63 246.9 201 56.2
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 3.8e-63 245.4 199 60.8
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 5.0e-63 245.0 201 55.7
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 8.5e-63 244.2 208 55.8
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.5e-62 243.4 233 54.9
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 1.5e-62 243.4 233 54.9
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 2.5e-62 242.7 210 57.6
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 4.2e-62 241.9 232 54.7
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 5.5e-62 241.5 199 58.3
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 1.6e-61 240.0 191 63.4
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.1e-61 239.6 208 55.3
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 2.7e-61 239.2 206 60.2
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 2.7e-61 239.2 202 55.9
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 3.6e-61 238.8 199 58.8
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 6.1e-61 238.0 200 59.5
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 8.0e-61 237.7 200 54.5
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 2.3e-60 236.1 210 54.3
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 4.0e-60 235.3 200 55.0
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 4.0e-60 235.3 200 55.0
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 4.0e-60 235.3 200 55.0
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 6.7e-60 234.6 204 57.4
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 1.5e-59 233.4 207 58.0
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 5.7e-59 231.5 239 51.9
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 1.7e-58 229.9 184 60.3
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.7e-58 229.9 208 54.3
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 2.2e-58 229.6 201 57.2
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 3.7e-58 228.8 212 55.2
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 3.7e-58 228.8 212 55.2
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 8.2e-58 227.6 200 52.5
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 8.2e-58 227.6 213 55.9
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.8e-57 226.5 199 53.3
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 3.1e-57 225.7 214 54.7
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 4.1e-57 225.3 198 57.6
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 5.3e-57 224.9 214 55.1
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 9.1e-57 224.2 199 58.3
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 1.6e-56 223.4 201 56.2
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 2.0e-56 223.0 205 51.7
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 2.0e-56 223.0 199 59.3
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 5.9e-56 221.5 201 56.7
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 7.7e-56 221.1 184 56.5
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 7.7e-56 221.1 166 65.7
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 2.2e-55 219.5 186 54.8
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.8e-55 218.8 205 57.6
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.9e-54 216.5 184 58.2
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 2.5e-54 216.1 199 54.3
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 3.2e-54 215.7 229 45.9
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 7.2e-54 214.5 196 57.1
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 9.4e-54 214.2 174 60.3
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 4.7e-53 211.8 199 50.8
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 8.0e-53 211.1 199 52.8
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.0e-52 209.1 201 50.7
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 3.0e-52 209.1 199 53.8
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.0e-52 208.8 224 51.8
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 5.2e-52 208.4 199 53.3
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 7.5e-51 204.5 200 52.0
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 5.4e-49 198.4 198 54.0
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 9.1e-49 197.6 199 51.8
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.6e-48 196.8 184 57.6
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 7.7e-48 194.5 200 46.0
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 3.8e-47 192.2 200 47.0
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 4.2e-46 188.7 201 44.3
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 1.4e-44 183.7 135 68.1
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 3.0e-44 182.6 160 58.8
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 2.8e-42 176.0 156 55.1
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 3.1e-41 172.6 207 42.5
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 5.0e-39 165.2 132 60.6
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 2.8e-37 159.5 124 61.3
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 6.1e-37 158.3 127 54.3
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 6.1e-37 158.3 201 45.3
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.0e-35 153.3 199 45.2
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 7.5e-35 151.4 98 68.4
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 1.6e-32 143.7 204 36.8
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.3e-31 140.6 206 42.2
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 1.3e-31 140.6 109 61.5
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 2.8e-29 132.9 139 47.5
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 2.3e-28 129.8 125 50.4
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 5.2e-28 128.6 104 60.6
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.9e-28 127.9 98 65.3
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 7.5e-27 124.8 98 61.2
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.7e-26 123.6 101 60.4
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 2.2e-26 123.2 94 61.7
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 3.7e-26 122.5 147 51.7
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.0e-23 112.8 101 59.4
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 3.3e-22 109.4 101 49.5
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 4.7e-21 105.5 70 70.0
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.2e-21 105.1 81 69.1
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-18 97.4 71 62.0
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 3.7e-18 95.9 112 43.8
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 6.4e-18 95.1 111 47.7
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 1.4e-17 94.0 68 67.6
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 1.2e-16 90.9 87 49.4
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 2.3e-15 86.7 109 50.5
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 1.9e-14 83.6 73 52.1
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.6e-14 82.0 71 54.9
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 1.6e-13 80.5 63 58.7
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 8.9e-12 74.7 79 48.1
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.9e-12 74.7 54 63.0
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 3.4e-11 72.8 160 31.9
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 3.8e-10 69.3 70 48.6
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 3.5e-08 62.8 41 65.9
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 7.8e-08 61.6 41 63.4
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 1.0e-07 61.2 40 65.0
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 2.3e-07 60.1 124 29.0
Haze_27325 Corylus avellana HOM05D004044 ORTHO05D004841 2.3e-07 60.1 102 31.4
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 2.3e-07 60.1 109 35.8
BolC3t13845H Brassica oleracea HOM05D004044 ORTHO05D004841 5.1e-07 58.9 135 30.4
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 8.7e-07 58.2 57 50.9
MSTRG.16970 Avicennia marina HOM05D004044 ORTHO05D004841 1.9e-06 57.0 197 24.9
BraA03t10501Z Brassica rapa HOM05D004044 ORTHO05D004841 1.9e-06 57.0 135 30.4
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.5e-06 56.6 60 51.7
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 3.3e-06 56.2 45 68.9
THA.LOC104799424 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 3.3e-06 56.2 127 29.1
MSTRG.20492 Avicennia marina HOM05D004044 ORTHO05D004841 4.3e-06 55.8 153 26.8
Rhsim10G0155000 Rhododendron simsii HOM05D004044 ORTHO05D004841 4.3e-06 55.8 165 24.8
Sc12g0001200 Simmondsia chinensis HOM05D004044 ORTHO05D004841 5.6e-06 55.5 153 26.8
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 5.6e-06 55.5 48 58.3
AL8G35510 Arabidopsis lyrata HOM05D004044 ORTHO05D004841 7.3e-06 55.1 140 28.6
Carub.0008s1977 Capsella rubella HOM05D004044 ORTHO05D004841 7.3e-06 55.1 140 28.6
CARHR285370 Cardamine hirsuta HOM05D004044 ORTHO05D004841 7.3e-06 55.1 140 27.9
Lalb_Chr03g0035651 Lupinus albus HOM05D004044 ORTHO05D004841 7.3e-06 55.1 153 27.5
THA.LOC104810752 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 7.3e-06 55.1 127 29.1
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 7.3e-06 55.1 58 46.6
C03p13980 Brassica napus HOM05D004044 ORTHO05D004841 9.6e-06 54.7 128 29.7
CAN.G141.22 Capsicum annuum HOM05D004044 ORTHO05D004841 9.6e-06 54.7 135 27.4
Lj2g0017435 Lotus japonicus HOM05D004044 ORTHO05D004841 9.6e-06 54.7 87 35.6
Lalb_Chr19g0130021 Lupinus albus HOM05D004044 ORTHO05D004841 9.6e-06 54.7 153 26.8
Nitab4.5_0000839g0100 Nicotiana tabacum HOM05D004044 ORTHO05D004841 9.6e-06 54.7 135 27.4
Nitab4.5_0005607g0010 Nicotiana tabacum HOM05D004044 ORTHO05D004841 9.6e-06 54.7 135 27.4
Oeu017406.1 Olea europaea HOM05D004044 ORTHO05D004841 9.6e-06 54.7 87 32.2
Sp6g20810 Schrenkiella parvula HOM05D004044 ORTHO05D004841 9.6e-06 54.7 140 27.9
Solyc06g005790.3 Solanum lycopersicum HOM05D004044 ORTHO05D004841 9.6e-06 54.7 135 27.4
VMungo0251G1187 Vigna mungo HOM05D004044 ORTHO05D004841 9.6e-06 54.7 153 26.8


User provided reference genes

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