Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 3.3e-252 875.2 664 100.0
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 3.6e-150 536.2 661 72.3
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 6.6e-144 515.4 669 69.8
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 6.6e-144 515.4 598 76.3
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 1.9e-138 497.3 662 71.0
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 1.5e-135 487.6 581 77.5
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 2.1e-134 483.8 665 70.7
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 6.4e-131 472.2 586 75.1
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 9.2e-130 468.4 607 71.7
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 6.0e-129 465.7 637 71.7
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 1.3e-128 464.5 586 74.9
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 8.6e-128 461.8 643 71.1
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 1.5e-127 461.1 596 72.5
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 2.1e-126 457.2 664 66.9
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 2.1e-126 457.2 673 67.8
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 2.1e-126 457.2 642 70.4
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 2.8e-126 456.8 586 75.3
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 6.2e-126 455.7 590 73.7
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 1.8e-125 454.1 676 67.8
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 3.1e-125 453.4 598 72.2
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 6.8e-125 452.2 580 73.4
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 1.2e-124 451.4 586 71.3
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 1.5e-124 451.1 652 65.5
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 4.4e-124 449.5 602 68.9
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 4.4e-124 449.5 601 70.9
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 5.8e-124 449.1 652 63.8
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 5.8e-124 449.1 598 71.2
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 9.9e-124 448.4 580 69.0
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 3.7e-123 446.4 586 68.4
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 6.4e-123 445.7 662 67.7
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 1.9e-122 444.1 654 63.1
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 7.1e-122 442.2 602 68.8
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 6.0e-121 439.1 587 70.5
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 7.8e-121 438.7 663 66.2
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 7.8e-121 438.7 713 65.9
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 1.0e-120 438.3 633 69.4
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 1.7e-120 437.6 597 72.9
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 2.3e-120 437.2 661 68.1
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 3.0e-120 436.8 594 72.1
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 5.1e-120 436.0 586 73.4
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 5.1e-120 436.0 585 72.6
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 6.6e-120 435.6 633 69.7
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 3.3e-119 433.3 618 67.5
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 5.6e-119 432.6 557 76.3
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 9.6e-119 431.8 594 72.1
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 5.2e-117 426.0 624 68.9
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 5.8e-116 422.5 586 71.3
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 9.9e-116 421.8 604 67.9
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 2.9e-115 420.2 655 68.2
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 8.4e-115 418.7 689 46.4
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 4.2e-114 416.4 528 77.1
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 1.7e-112 411.0 586 71.7
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 2.3e-112 410.6 585 71.3
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 6.6e-112 409.1 674 57.1
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 2.5e-111 407.1 528 75.4
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 2.6e-108 397.1 575 69.0
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 1.7e-107 394.4 528 74.4
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 6.4e-107 392.5 566 72.3
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 1.4e-106 391.3 676 65.5
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 4.2e-106 389.8 635 66.0
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 5.1e-104 382.9 591 70.4
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 6.6e-104 382.5 591 70.4
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 2.5e-103 380.6 601 68.1
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 3.8e-99 366.7 581 60.6
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 3.2e-98 363.6 532 72.4
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 2.5e-95 354.0 565 45.8
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 9.6e-95 352.1 576 62.2
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 2.8e-94 350.5 576 64.4
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 6.2e-94 349.4 619 64.8
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 7.9e-89 332.4 561 65.8
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 2.4e-85 320.9 587 63.0
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 2.2e-83 314.3 545 66.2
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 9.3e-82 308.9 219 68.9
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 3.6e-81 307.0 222 65.8
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 5.1e-80 303.1 222 68.5
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 8.7e-80 302.4 609 61.2
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 1.9e-79 301.2 584 58.2
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 4.3e-79 300.1 581 63.7
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 2.6e-76 290.8 584 57.9
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 1.3e-75 288.5 222 64.0
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 2.7e-73 280.8 213 65.3
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.9e-72 276.9 220 63.2
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.7e-70 271.6 192 68.2
Oeu008898.1 Olea europaea HOM05D007322 ORTHO05D009029 9.4e-66 255.8 271 62.7
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 2.1e-65 254.6 528 66.1
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 2.9e-59 234.2 168 67.3
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 1.2e-57 228.8 488 67.0
FAN04G1727 Fragaria x ananassa HOM05D001260 ORTHO05D002424 9.7e-55 219.2 222 63.1
CDE05G1655 Ceratophyllum demersum HOM05D007322 ORTHO05D009029 6.1e-49 199.9 221 48.4
Nitab4.5_0000001g0170 Nicotiana tabacum HOM05D007322 ORTHO05D009029 6.1e-49 199.9 210 62.9
Peaxi162Scf00152g01436 Petunia axillaris HOM05D007322 ORTHO05D009029 1.7e-43 181.8 291 48.1
Nitab4.5_0003788g0010 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.8e-35 154.1 155 67.7
DCAR_025359 Daucus carota HOM05D007322 ORTHO05D009029 1.1e-34 152.5 152 67.1
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 2.0e-31 141.7 108 63.9
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 2.7e-28 131.3 124 57.3
Cpa.g.c42393 Carica papaya HOM05D007322 ORTHO05D009029 2.3e-27 128.3 118 57.6
Actinidia26149 Actinidia chinensis HOM05D007322 ORTHO05D009029 2.4e-21 108.2 115 70.4
Peaxi162Scf00427g00004 Petunia axillaris HOM05D007322 ORTHO05D009029 1.3e-19 102.4 54 85.2
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 8.9e-16 89.7 67 62.7
Pp3c24_4430 Physcomitrium patens HOM05D007322 ORTHO05D009029 1.0e-11 76.3 126 33.3
Pp3c22_3230 Physcomitrium patens HOM05D003056 ORTHO05D003422 4.7e-09 67.4 127 26.8
Medtr2g036560 Medicago truncatula HOM05D003056 ORTHO05D003422 2.6e-07 61.6 187 21.4
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 3.4e-07 61.2 212 24.1
Oeu055282.2 Olea europaea HOM05D006258 ORTHO05D007961 3.4e-07 61.2 126 31.7
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 4.4e-07 60.8 81 37.0
Ca_02033_v3 Cicer arietinum L. HOM05D003056 ORTHO05D003422 5.8e-07 60.5 181 21.0
Pp3c4_14490 Physcomitrium patens HOM05D005862 ORTHO05D000003 5.8e-07 60.5 170 26.5
HanXRQChr03g0066041 Helianthus annuus HOM05D006258 ORTHO05D007961 2.9e-06 58.2 159 26.4
Psat1g146880 Pisum sativum HOM05D003056 ORTHO05D003422 2.9e-06 58.2 181 21.0
TPR.G20572 Trifolium pratense HOM05D003056 ORTHO05D003422 2.9e-06 58.2 119 25.2
ATR0661G573 Amborella trichopoda HOM05D003056 ORTHO05D003422 3.8e-06 57.8 232 26.7
Mapoly0063s0054 Marchantia polymorpha HOM05D003056 ORTHO05D003422 4.9e-06 57.4 221 22.2
SEGI_07964 Sequoiadendron giganteum HOM05D006217 ORTHO05D008480 4.9e-06 57.4 137 26.3
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 8.4e-06 56.6 103 28.2
Sed0009936 Sechium edule HOM05D003056 ORTHO05D003422 8.4e-06 56.6 115 27.8


User provided reference genes

Program Settings