Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.5e-60 235.7 134 100.0
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.1e-36 157.1 132 57.6
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 4.8e-35 151.8 134 55.2
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 5.9e-33 144.8 141 53.2
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.9e-33 144.8 135 56.3
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.7e-32 143.3 141 52.5
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.2e-32 142.9 138 52.9
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 2.9e-32 142.5 132 55.3
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 2.9e-32 142.5 136 51.5
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 3.8e-32 142.1 134 52.2
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 3.8e-32 142.1 135 54.1
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 8.5e-32 141.0 134 53.0
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.9e-31 139.8 132 54.5
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 4.2e-31 138.7 135 54.8
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 5.5e-31 138.3 140 52.1
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 9.4e-31 137.5 128 54.7
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.2e-30 137.1 99 62.6
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 2.1e-30 136.3 133 53.4
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 2.7e-30 136.0 132 50.8
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.6e-30 135.6 135 51.9
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 4.7e-30 135.2 134 51.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 1.0e-29 134.0 137 51.8
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.0e-29 134.0 118 53.4
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.4e-29 133.7 131 51.9
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.8e-29 133.3 135 51.1
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 2.3e-29 132.9 118 56.8
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 3.0e-29 132.5 135 52.6
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 3.0e-29 132.5 133 49.6
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 4.0e-29 132.1 135 51.1
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 5.2e-29 131.7 132 50.0
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 6.8e-29 131.3 134 52.2
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 6.8e-29 131.3 121 53.7
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 1.2e-28 130.6 129 53.5
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 2.0e-28 129.8 128 47.7
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.6e-28 129.4 131 51.1
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 5.7e-28 128.3 129 49.6
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 5.7e-28 128.3 138 49.3
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 5.7e-28 128.3 134 50.0
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 5.7e-28 128.3 132 52.3
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 7.5e-28 127.9 133 49.6
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 7.5e-28 127.9 129 49.6
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 7.5e-28 127.9 136 50.7
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 1.7e-27 126.7 127 51.2
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.7e-27 126.7 155 43.9
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 2.2e-27 126.3 137 50.4
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 3.7e-27 125.6 134 46.3
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 4.8e-27 125.2 128 46.9
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.8e-27 125.2 135 50.4
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 6.3e-27 124.8 133 49.6
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 6.3e-27 124.8 94 63.8
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 6.3e-27 124.8 124 52.4
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 8.3e-27 124.4 96 60.4
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.8e-26 123.2 132 48.5
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 2.4e-26 122.9 133 52.6
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 2.4e-26 122.9 132 45.5
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.4e-26 122.9 134 47.8
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 3.1e-26 122.5 94 60.6
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 3.1e-26 122.5 134 49.3
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 3.1e-26 122.5 136 49.3
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.1e-26 122.1 132 48.5
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 4.1e-26 122.1 135 47.4
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 4.1e-26 122.1 134 47.8
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 7.0e-26 121.3 132 52.3
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 7.0e-26 121.3 132 52.3
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 7.0e-26 121.3 125 51.2
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 9.1e-26 120.9 129 49.6
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 1.2e-25 120.6 93 62.4
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 1.2e-25 120.6 135 48.1
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.6e-25 120.2 130 49.2
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 1.6e-25 120.2 134 49.3
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 2.0e-25 119.8 136 47.1
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 2.0e-25 119.8 143 48.3
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.7e-25 119.4 132 51.5
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.7e-25 119.4 132 51.5
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 2.7e-25 119.4 135 46.7
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.0e-24 117.5 131 48.1
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 1.0e-24 117.5 125 50.4
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.0e-24 117.5 138 48.6
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 1.3e-24 117.1 134 44.0
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.7e-24 116.7 133 48.1
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 1.7e-24 116.7 156 41.0
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 5.0e-24 115.2 138 47.8
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 8.5e-24 114.4 138 47.1
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 8.5e-24 114.4 135 46.7
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 1.1e-23 114.0 135 45.9
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.5e-23 113.6 137 47.4
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.5e-23 113.6 87 63.2
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.9e-23 113.2 131 45.0
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 2.5e-23 112.8 121 43.8
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 3.2e-23 112.5 135 45.9
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 7.2e-23 111.3 89 57.3
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 7.2e-23 111.3 99 53.5
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 7.2e-23 111.3 135 49.6
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.2e-22 110.5 135 48.1
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 1.2e-22 110.5 118 48.3
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.6e-22 110.2 136 45.6
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.6e-22 110.2 131 47.3
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 2.1e-22 109.8 135 46.7
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.6e-22 109.0 132 45.5
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 4.7e-22 108.6 99 53.5
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 8.0e-22 107.8 124 44.4
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 1.0e-21 107.5 132 45.5
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 1.0e-21 107.5 132 45.5
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.4e-21 107.1 135 48.1
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 2.3e-21 106.3 133 47.4
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 2.3e-21 106.3 133 47.4
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 2.3e-21 106.3 133 47.4
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 3.0e-21 105.9 92 55.4
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 3.0e-21 105.9 133 48.9
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 5.2e-21 105.1 136 44.9
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 5.2e-21 105.1 89 57.3
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 1.5e-20 103.6 135 45.2
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 4.4e-20 102.1 94 54.3
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 4.4e-20 102.1 94 51.1
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 5.7e-20 101.7 128 45.3
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 1.7e-19 100.1 75 62.7
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 2.4e-18 96.3 83 54.2
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.6e-17 93.6 134 38.1
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.6e-17 93.6 135 40.7
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 4.5e-17 92.0 134 38.8
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 5.9e-17 91.7 134 38.8
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.0e-16 90.9 133 36.1
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 2.3e-16 89.7 97 49.5
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.9e-16 89.4 83 54.2
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 3.8e-16 89.0 130 43.1
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 3.8e-16 89.0 92 46.7
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 5.0e-16 88.6 97 45.4
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 5.0e-16 88.6 97 45.4
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 8.6e-16 87.8 144 36.8
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 8.6e-16 87.8 144 36.8
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 1.9e-15 86.7 126 41.3
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 1.9e-15 86.7 134 35.8
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 5.6e-15 85.1 105 44.8
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.6e-14 83.6 94 46.8
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.6e-14 82.4 66 59.1
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 2.3e-13 79.7 66 57.6
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 5.2e-13 78.6 96 41.7
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 8.9e-13 77.8 104 41.3
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.2e-12 77.4 147 35.4
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.6e-12 76.3 93 45.2
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 7.5e-12 74.7 91 45.1
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 4.9e-11 72.0 60 56.7
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 1.4e-10 70.5 130 36.2
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 2.4e-10 69.7 133 33.8
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 2.7e-09 66.2 43 72.1
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 3.5e-09 65.9 60 48.3
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 4.6e-09 65.5 53 60.4
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 5.9e-09 65.1 90 41.1
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 3.0e-08 62.8 70 55.7
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 5.0e-08 62.0 134 30.6
Hma1.2p1_0549F.1_g176970 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 5.0e-08 62.0 80 38.8
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 8.6e-08 61.2 71 43.7
A06p29750 Brassica napus HOM05D004569 ORTHO05D005333 3.6e-06 55.8 62 45.2
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 6.2e-06 55.1 80 36.2


User provided reference genes

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