Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 3493.4 1897 100.0
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2643.6 1934 76.7
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2552.3 1827 76.0
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2491.1 1955 72.9
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2460.6 1868 71.9
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2281.9 1939 68.2
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2261.9 1819 67.7
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2253.0 1930 66.3
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2237.6 1909 66.5
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2226.1 1897 66.6
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2214.5 1927 65.1
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2205.3 1938 64.8
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2197.9 1912 66.2
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2197.5 1905 66.9
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2189.1 1983 63.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2161.7 1834 64.9
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2157.9 1972 64.3
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2145.2 1930 64.6
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2144.8 1830 64.7
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2143.2 1944 63.2
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2142.9 1912 64.9
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2142.1 1861 64.2
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2137.1 1868 64.8
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2135.5 1931 64.1
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2135.1 1908 64.9
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2133.2 1787 65.4
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2129.8 1952 64.3
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2126.7 1914 65.1
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2121.7 1787 65.7
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2121.3 1799 64.8
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2106.6 1922 63.1
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2105.5 1887 64.0
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2105.1 1918 63.1
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2103.9 1932 63.5
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2097.0 1782 65.0
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2095.1 1919 64.4
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2090.8 1971 62.2
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2084.7 1906 64.0
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2083.9 1927 62.1
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2083.1 1932 63.3
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2082.4 1906 63.9
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2082.4 1851 64.0
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2081.2 1931 62.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2078.5 1880 64.5
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2078.1 1924 60.8
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2078.1 1906 63.8
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2077.8 1912 63.8
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2075.1 1878 64.3
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2068.5 1930 62.3
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2063.5 1816 62.7
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2059.6 1920 62.8
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2059.6 1878 64.5
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2058.9 1810 63.4
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2050.4 1945 61.5
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2046.2 1915 62.6
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2040.4 1809 63.0
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2040.0 1970 61.1
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2038.1 1949 60.9
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2030.4 1890 62.6
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2025.0 1824 61.7
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2024.6 1901 62.1
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2023.1 1777 63.6
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2023.1 1931 61.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2022.3 1792 63.3
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2009.2 1900 61.5
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2004.2 1809 61.7
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 1999.9 1906 61.1
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 1991.9 1790 61.8
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 1991.1 1890 61.8
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 1989.5 1880 62.9
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 1985.3 1979 60.0
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1973.4 1825 60.8
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 1950.3 1910 60.5
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 1944.9 1905 60.8
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1933.3 1831 59.8
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 1923.7 1778 63.5
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 1911.7 1816 59.5
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 1907.9 1936 59.1
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1865.9 1915 58.1
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1864.7 1996 57.0
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1853.6 1845 58.6
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1836.6 1893 58.4
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1830.5 1826 57.1
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1825.8 1798 57.6
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1823.5 1677 60.6
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1813.5 1832 56.8
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1789.6 1830 56.2
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1781.1 1696 59.9
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1744.2 1862 54.2
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1736.5 1837 55.1
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1733.0 1835 55.1
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1725.3 1829 54.4
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1724.1 1807 55.3
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1719.1 1835 54.6
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1717.6 1837 54.7
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1716.8 1835 54.7
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1710.7 1831 54.1
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1704.5 1878 54.4
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1703.7 1844 53.4
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1703.7 1844 53.4
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1703.3 1890 54.2
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1701.4 1845 53.6
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1692.9 1833 53.8
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1675.2 1832 53.5
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1644.4 1895 52.9
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1619.4 1937 52.8
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1594.3 1811 51.7
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1571.2 1812 50.9
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1464.1 1232 65.9
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1451.8 1935 46.9
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1449.9 1230 66.3
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1448.0 1822 48.7
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1415.6 1890 46.3
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1415.6 1890 46.3
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1383.6 1214 64.8
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1382.1 1858 47.0
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1374.8 1511 55.4
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1327.8 1339 56.0
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1286.6 1083 69.2
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1206.4 1764 44.0
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1182.5 1458 51.3
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1127.5 922 66.8
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1105.9 1022 64.4
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 0.0e+00 1083.9 1452 50.6
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 7.1e-292 1008.4 1341 50.0
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 4.7e-288 995.7 1802 39.1
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.6e-283 980.7 848 67.7
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 2.5e-273 946.8 854 63.9
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 2.0e-270 937.2 1626 40.3
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 6.9e-247 859.0 809 59.6
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 4.1e-231 806.6 868 54.5
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.5e-204 717.6 605 69.3
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.1e-187 661.4 652 55.1
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 1.4e-178 632.1 638 54.4
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 5.2e-178 630.2 702 52.3
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 4.9e-168 597.0 501 63.1
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.8e-163 581.3 446 74.9
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 1.2e-150 539.3 602 52.0
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.7e-150 538.1 542 62.0
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.5e-142 511.1 542 60.1
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 2.1e-118 432.2 1199 29.4
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 3.0e-109 401.7 423 56.3
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.0e-105 389.0 438 52.5
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.7e-80 306.2 634 35.6
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 8.0e-78 297.4 2068 22.1
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.7e-75 289.7 465 41.1
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 1.2e-73 283.5 460 43.7
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.5e-71 275.8 824 31.7
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 3.7e-67 261.9 425 40.7
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 2.3e-64 252.7 161 78.3
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.3e-63 248.8 225 64.9
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 1.4e-53 216.9 198 65.2
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 4.0e-53 215.3 257 48.6
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 1.3e-38 167.2 170 60.0
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 6.9e-37 161.4 184 75.5
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.7e-19 103.6 188 45.2
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 9.3e-18 97.8 82 58.5
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 5.1e-16 92.0 99 52.5
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 4.5e-12 79.0 59 61.0
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.2e-11 76.6 52 65.4
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 8.5e-11 74.7 65 55.4
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 1.4e-08 67.4 33 84.8
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 6.7e-08 65.1 59 52.5
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.1e-07 64.3 52 57.7
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 4.8e-06 58.9 42 64.3


User provided reference genes

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