Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 0.0e+00 1159.8 595 100.0
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 8.5e-268 926.8 598 80.9
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 2.0e-253 879.0 666 73.6
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 4.5e-253 877.9 595 78.3
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.8e-241 839.3 510 82.2
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.1e-234 814.3 598 71.9
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 6.1e-234 814.3 598 71.9
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 5.2e-233 811.2 595 72.6
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 4.1e-230 801.6 576 72.0
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 5.9e-229 797.7 601 71.5
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 1.3e-228 796.6 585 70.8
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.9e-228 795.4 601 71.2
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 3.6e-226 788.5 598 69.2
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 4.7e-226 788.1 612 70.8
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 1.4e-225 786.6 585 72.5
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 3.4e-224 781.9 576 69.3
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 2.9e-223 778.9 527 75.9
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 3.7e-223 778.5 504 77.2
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 3.7e-223 778.5 602 68.1
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 6.4e-223 777.7 621 68.8
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 6.4e-223 777.7 604 69.2
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 6.4e-223 777.7 608 68.1
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.9e-222 776.2 511 77.1
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 4.1e-222 775.0 599 68.6
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 5.4e-222 774.6 611 67.8
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 7.0e-222 774.2 602 69.1
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.6e-221 773.1 607 68.9
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.0e-221 772.7 597 67.8
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 4.6e-221 771.5 587 69.5
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.0e-221 771.2 619 65.9
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.0e-221 771.2 611 67.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 6.0e-221 771.2 596 70.3
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 1.3e-220 770.0 610 67.9
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 1.3e-220 770.0 608 68.3
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.7e-220 769.6 587 71.0
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 2.3e-220 769.2 611 67.3
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 2.3e-220 769.2 598 69.4
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 3.0e-220 768.8 607 67.4
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 5.0e-220 768.1 603 67.5
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 8.6e-220 767.3 610 67.9
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.2e-218 763.5 609 67.2
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 1.2e-218 763.5 504 77.0
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.2e-218 763.5 610 67.4
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 1.6e-218 763.1 610 66.7
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 2.1e-218 762.7 595 67.2
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 8.0e-218 760.8 610 66.2
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 8.0e-218 760.8 610 66.2
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 8.0e-218 760.8 610 66.9
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 8.0e-218 760.8 637 65.0
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 1.1e-217 760.4 612 67.2
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 3.1e-217 758.8 585 68.7
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 4.0e-217 758.4 506 76.1
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 5.2e-217 758.1 582 68.7
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 1.2e-216 756.9 610 65.9
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 3.4e-216 755.4 615 65.9
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 4.4e-216 755.0 602 67.8
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 4.4e-216 755.0 611 66.4
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 1.3e-215 753.4 509 73.1
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 1.3e-215 753.4 606 67.2
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 3.7e-215 751.9 611 65.5
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 1.9e-214 749.6 604 67.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 3.2e-214 748.8 544 71.7
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 3.2e-214 748.8 595 66.1
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 7.1e-214 747.7 613 66.6
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 7.1e-214 747.7 579 67.2
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 1.2e-213 746.9 507 73.2
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 3.5e-213 745.3 607 65.9
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 7.8e-213 744.2 546 71.4
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 7.8e-213 744.2 611 65.8
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.3e-212 743.4 609 65.7
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.3e-212 743.4 609 65.7
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 3.0e-212 742.3 597 65.7
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 1.1e-211 740.3 596 66.4
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.9e-211 739.6 508 73.2
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 4.3e-211 738.4 502 72.5
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 6.2e-210 734.6 587 66.1
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 6.2e-210 734.6 518 73.2
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.1e-209 733.8 606 65.5
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 5.2e-209 731.5 578 66.8
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 6.8e-209 731.1 595 65.0
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.0e-208 729.6 518 72.4
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 4.4e-208 728.4 606 66.5
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.1e-206 723.8 585 67.5
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 2.5e-203 712.6 608 64.8
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 4.3e-203 711.8 660 61.4
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 6.2e-202 708.0 636 61.6
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 6.4e-199 698.0 518 70.1
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.2e-197 693.7 461 75.7
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 4.6e-197 691.8 583 63.3
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.7e-191 673.3 584 63.7
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 4.6e-189 665.2 590 62.0
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 7.3e-187 657.9 456 71.7
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.1e-185 654.1 552 62.9
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 4.0e-185 652.1 602 61.0
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.3e-185 651.7 459 71.9
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 2.0e-184 649.8 606 57.1
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 2.1e-181 639.8 643 57.1
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.7e-180 634.4 525 63.2
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 2.4e-177 626.3 552 60.5
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 4.5e-176 622.1 502 63.9
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 9.3e-166 587.8 484 65.7
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.3e-164 583.9 396 74.2
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 6.7e-164 581.6 437 64.3
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 1.9e-163 580.1 439 67.4
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 8.2e-162 574.7 558 57.3
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 8.5e-159 564.7 586 55.8
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.0e-156 557.8 523 58.3
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.0e-140 504.6 520 56.2
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.3e-135 487.6 442 55.0
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 2.9e-135 486.5 345 71.6
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 8.3e-130 468.4 504 49.6
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 3.5e-128 463.0 485 50.9
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 3.6e-125 453.0 483 50.3
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.9e-119 433.3 392 56.9
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 1.5e-118 431.0 426 58.0
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 5.0e-111 406.0 412 58.7
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 2.8e-109 400.2 462 52.2
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 9.8e-107 391.7 480 45.6
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 4.1e-105 386.3 266 73.7
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.1e-92 345.1 204 83.3
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 8.9e-92 342.0 282 59.2
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 3.1e-76 290.4 226 65.9
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 3.8e-74 283.5 202 66.3
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 3.3e-70 270.4 173 75.7
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.5e-67 261.5 262 50.0
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.1e-62 245.4 396 36.9
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 4.3e-62 243.4 237 59.9
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.2e-59 235.3 277 46.2
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 1.0e-58 232.3 178 64.6
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 1.4e-57 228.4 284 45.1
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 2.5e-54 217.6 128 82.0
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.4e-52 211.1 258 47.7
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 6.1e-48 196.4 177 62.1
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.9e-46 191.4 128 72.7
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 3.1e-44 184.1 272 41.5
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 4.1e-44 183.7 113 79.6
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.3e-34 152.1 106 70.8
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 1.7e-34 151.8 269 36.4
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 7.2e-33 146.4 196 46.4
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.1e-32 144.8 122 58.2
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-30 139.0 95 72.6
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.5e-25 122.1 210 38.6
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.9e-25 121.7 268 33.2
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 3.6e-24 117.5 88 63.6
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 4.0e-23 114.0 105 54.3
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 1.1e-20 105.9 88 61.4
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 3.1e-20 104.4 56 96.4
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.7e-19 101.3 232 36.2
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.0e-18 99.4 57 91.2
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.3e-18 99.0 91 52.7
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.7e-18 98.6 92 52.2
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 2.1e-16 91.7 71 63.4
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.8e-15 88.6 54 83.3
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 3.0e-15 87.8 71 60.6
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.4e-12 79.0 248 27.0
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 3.8e-10 70.9 59 59.3
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 3.8e-10 70.9 105 39.0
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 6.5e-10 70.1 267 24.3
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 3.0e-07 61.2 36 80.6
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.0e-06 58.5 40 72.5
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 5.7e-06 57.0 52 51.9


User provided reference genes

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