Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g106415 Medicago truncatula HOM05D001849 ORTHO05D004075 4.6e-58 227.6 112 100.0
Medtr8g021980 Medicago truncatula HOM05D001849 ORTHO05D004075 1.5e-24 116.3 90 66.7
Medtr5g009590 Medicago truncatula HOM05D001849 ORTHO05D004075 5.7e-24 114.4 90 67.8
Psat4g166800 Pisum sativum HOM05D001849 ORTHO05D004075 5.7e-24 114.4 90 63.3
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.7e-24 114.4 90 63.3
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 5.7e-24 114.4 90 63.3
Glyma.07G042100 Glycine max HOM05D001849 ORTHO05D004075 7.4e-24 114.0 89 66.3
Glyma.16G010400 Glycine max HOM05D001849 ORTHO05D004075 9.7e-24 113.6 87 67.8
Lalb_Chr17g0343441 Lupinus albus HOM05D001849 ORTHO05D004075 3.7e-23 111.7 90 63.3
Medtr8g106435 Medicago truncatula HOM05D001849 ORTHO05D004075 1.4e-22 109.8 76 75.0
Phvul.010G125600 Phaseolus vulgaris HOM05D001849 ORTHO05D004075 1.4e-22 109.8 89 64.0
Ca_23413_v3 Cicer arietinum L. HOM05D001849 ORTHO05D004075 3.1e-22 108.6 90 62.2
Lalb_Chr04g0253751 Lupinus albus HOM05D001849 ORTHO05D004075 3.1e-22 108.6 90 62.2
Lalb_Chr10g0101311 Lupinus albus HOM05D001849 ORTHO05D004075 5.3e-22 107.8 88 64.8
CiPaw.01G215800 Carya illinoinensis HOM05D001849 ORTHO05D004075 9.1e-22 107.1 87 62.1
TPR.G29998 Trifolium pratense HOM05D001849 ORTHO05D004075 9.1e-22 107.1 90 62.2
CANSAT56G4149 Cannabis sativa HOM05D001849 ORTHO05D004075 1.2e-21 106.7 91 59.3
Cfa003510 Carpinus fangiana HOM05D001849 ORTHO05D004075 2.0e-21 105.9 89 59.6
CiPaw.02G133700 Carya illinoinensis HOM05D001849 ORTHO05D004075 2.6e-21 105.5 90 58.9
VMungo0331G0811 Vigna mungo HOM05D001849 ORTHO05D004075 4.5e-21 104.8 89 60.7
arahy.Tifrunner.gnm1.ann1.M8Z2DU Arachis hypogaea HOM05D001849 ORTHO05D004075 1.0e-20 103.6 90 58.9
arahy.Tifrunner.gnm1.ann1.NEIN3W Arachis hypogaea HOM05D001849 ORTHO05D004075 1.0e-20 103.6 90 58.9
Haze_16065 Corylus avellana HOM05D001849 ORTHO05D004075 1.0e-20 103.6 89 58.4
Lj3g0013610 Lotus japonicus HOM05D001849 ORTHO05D004075 1.3e-20 103.2 90 60.0
MD09G1178000 Malus domestica HOM05D001849 ORTHO05D004075 2.9e-20 102.1 90 55.6
Prupe.3G037300 Prunus persica HOM05D001849 ORTHO05D004075 5.0e-20 101.3 90 56.7
Dinv37967 Davidia involucrata HOM05D001849 ORTHO05D004075 1.1e-19 100.1 90 55.6
MD17G1148700 Malus domestica HOM05D001849 ORTHO05D004075 1.5e-19 99.8 90 54.4
Potri.003G069200 Populus trichocarpa HOM05D001849 ORTHO05D004075 3.2e-19 98.6 90 55.6
Duzib235G1365 Durio zibethinus HOM05D001849 ORTHO05D004075 4.2e-19 98.2 90 55.6
FvH4_6g35180 Fragaria vesca HOM05D001849 ORTHO05D004075 7.2e-19 97.4 90 55.6
FAN05G2069 Fragaria x ananassa HOM05D001849 ORTHO05D004075 7.2e-19 97.4 94 53.2
FAN14G5889 Fragaria x ananassa HOM05D001849 ORTHO05D004075 7.2e-19 97.4 94 53.2
Gohir.A05G138700 Gossypium hirsutum HOM05D001849 ORTHO05D004075 7.2e-19 97.4 90 55.6
Gohir.D05G140900 Gossypium hirsutum HOM05D001849 ORTHO05D004075 7.2e-19 97.4 90 55.6
Gorai.009G145100 Gossypium raimondii HOM05D001849 ORTHO05D004075 7.2e-19 97.4 90 55.6
Sabra01G0127500 Salix brachista HOM05D001849 ORTHO05D004075 7.2e-19 97.4 90 55.6
Sabra03G0040600 Salix brachista HOM05D001849 ORTHO05D004075 7.2e-19 97.4 90 55.6
FAN09G3103 Fragaria x ananassa HOM05D001849 ORTHO05D004075 9.4e-19 97.1 90 55.6
RcHm_v2.0_Chr2g0146441 Rosa chinensis HOM05D001849 ORTHO05D004075 9.4e-19 97.1 90 55.6
QL05p003642 Quercus lobata HOM05D001849 ORTHO05D004075 1.6e-18 96.3 90 55.6
GSVIVG01016716001 Vitis vinifera HOM05D001849 ORTHO05D004075 2.7e-18 95.5 90 53.3
CSS0013236 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.6e-18 95.1 90 53.3
CSS0036669 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 3.6e-18 95.1 90 53.3
MSTRG.22534 Avicennia marina HOM05D001849 ORTHO05D004075 4.7e-18 94.7 83 55.4
Potri.001G165800 Populus trichocarpa HOM05D001849 ORTHO05D004075 4.7e-18 94.7 90 54.4
Ciclev10024725m.g Citrus clementina HOM05D001849 ORTHO05D004075 6.1e-18 94.4 90 54.4
Actinidia32207 Actinidia chinensis HOM05D001849 ORTHO05D004075 8.0e-18 94.0 90 54.4
Duzib192G0748 Durio zibethinus HOM05D001849 ORTHO05D004075 8.0e-18 94.0 90 53.3
Migut.I01106 Erythranthe guttata HOM05D001849 ORTHO05D004075 8.0e-18 94.0 89 51.7
THA.LOC104812264 Tarenaya hassleriana HOM05D001849 ORTHO05D004075 8.0e-18 94.0 82 54.9
AL2G32060 Arabidopsis lyrata HOM05D001849 ORTHO05D004075 1.0e-17 93.6 82 56.1
AT1G72390 Arabidopsis thaliana HOM05D001849 ORTHO05D004075 1.4e-17 93.2 82 56.1
A07p38580 Brassica napus HOM05D001849 ORTHO05D004075 1.4e-17 93.2 82 54.9
C06p46750 Brassica napus HOM05D001849 ORTHO05D004075 1.4e-17 93.2 82 54.9
BolC6t39719H Brassica oleracea HOM05D001849 ORTHO05D004075 1.4e-17 93.2 82 54.9
BraA07t31416Z Brassica rapa HOM05D001849 ORTHO05D004075 1.4e-17 93.2 82 54.9
Thhalv10018006m.g Eutrema salsugineum HOM05D001849 ORTHO05D004075 1.4e-17 93.2 82 54.9
Carub.0002s1924 Capsella rubella HOM05D001849 ORTHO05D004075 1.8e-17 92.8 82 56.1
AUR62009923 Chenopodium quinoa HOM05D001849 ORTHO05D004075 1.8e-17 92.8 80 56.2
Rhsim08G0241300 Rhododendron simsii HOM05D001849 ORTHO05D004689 1.8e-17 92.8 90 53.3
AUR62001442 Chenopodium quinoa HOM05D001849 ORTHO05D004075 3.0e-17 92.0 80 56.2
Nitab4.5_0003137g0070 Nicotiana tabacum HOM05D001849 ORTHO05D004075 4.0e-17 91.7 90 48.9
Peaxi162Scf00207g01546 Petunia axillaris HOM05D001849 ORTHO05D004075 4.0e-17 91.7 90 50.0
TWI59G0043 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 4.0e-17 91.7 90 52.2
Cc04_g01030 Coffea canephora HOM05D001849 ORTHO05D004075 6.7e-17 90.9 90 51.1
DCAR_026425 Daucus carota HOM05D001849 ORTHO05D004075 6.7e-17 90.9 89 53.9
FAN02G1816 Fragaria x ananassa HOM05D001849 ORTHO05D004075 6.7e-17 90.9 90 54.4
TWI14G1157 Tripterygium wilfordii HOM05D001849 ORTHO05D004075 6.7e-17 90.9 90 52.2
Atru.chr1.4088 Acer truncatum HOM05D001849 ORTHO05D004075 8.8e-17 90.5 83 59.0
Nitab4.5_0002716g0060 Nicotiana tabacum HOM05D001849 ORTHO05D004075 8.8e-17 90.5 90 47.8
COL.COLO4_30798 Corchorus olitorius HOM05D001849 ORTHO05D004075 1.2e-16 90.1 90 53.3
MBI19_g29883_MAGBIO Magnolia biondii HOM05D001849 ORTHO05D004075 1.2e-16 90.1 90 52.2
Sp5g27470 Schrenkiella parvula HOM05D001849 ORTHO05D004075 1.2e-16 90.1 82 53.7
Manes.04G148200 Manihot esculenta HOM05D001849 ORTHO05D004075 2.0e-16 89.4 90 52.2
PSO386G0057 Papaver somniferum HOM05D001849 ORTHO05D004075 2.0e-16 89.4 90 52.2
PSO724G0042 Papaver somniferum HOM05D001849 ORTHO05D004075 2.0e-16 89.4 90 53.3
Ah.15g095140 Amaranthus hybridus HOM05D001849 ORTHO05D004075 2.6e-16 89.0 90 52.2
Aqoxy7G04079 Aquilegia oxysepala HOM05D001849 ORTHO05D004075 2.6e-16 89.0 90 51.1
Dinv37845 Davidia involucrata HOM05D001849 ORTHO05D004075 2.6e-16 89.0 64 65.6
Nitab4.5_0012739g0010 Nicotiana tabacum HOM05D001849 ORTHO05D004075 2.6e-16 89.0 91 50.5
BcaB05g24751 Brassica carinata HOM05D001849 ORTHO05D004075 4.4e-16 88.2 82 53.7
ClCG09G001150 Citrullus lanatus HOM05D001849 ORTHO05D004075 4.4e-16 88.2 83 54.2
Gohir.D06G149500 Gossypium hirsutum HOM05D001849 ORTHO05D004075 4.4e-16 88.2 90 52.2
Gorai.010G174200 Gossypium raimondii HOM05D001849 ORTHO05D004075 4.4e-16 88.2 90 52.2
Lj9C535T9 Lonicera japonica HOM05D001849 ORTHO05D004075 4.4e-16 88.2 90 50.0
CARHR065290 Cardamine hirsuta HOM05D001849 ORTHO05D004075 5.7e-16 87.8 82 53.7
EL10Ac7g16445 Beta vulgaris HOM05D001849 ORTHO05D004075 7.5e-16 87.4 80 52.5
CAN.G1743.7 Capsicum annuum HOM05D001849 ORTHO05D004075 7.5e-16 87.4 90 47.8
BcaC03g15374 Brassica carinata HOM05D001849 ORTHO05D004075 9.7e-16 87.0 82 53.7
A02p17980 Brassica napus HOM05D001849 ORTHO05D004075 9.7e-16 87.0 82 53.7
C02p29880 Brassica napus HOM05D001849 ORTHO05D004075 9.7e-16 87.0 82 53.7
BolC2t09038H Brassica oleracea HOM05D001849 ORTHO05D004075 9.7e-16 87.0 82 53.7
BraA02t06845Z Brassica rapa HOM05D001849 ORTHO05D004075 9.7e-16 87.0 82 53.7
Hma1.2p1_0229F.1_g096780 Hydrangea macrophylla HOM05D001849 ORTHO05D004075 1.3e-15 86.7 89 51.7
Nn8g38564 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.3e-15 86.7 66 63.6
Hund18671 Selenicereus undatus HOM05D001849 ORTHO05D004075 1.3e-15 86.7 90 50.0
Solyc06g063010.4 Solanum lycopersicum HOM05D001849 ORTHO05D004075 1.3e-15 86.7 90 48.9
Sopen06g022460 Solanum pennellii HOM05D001849 ORTHO05D004075 1.3e-15 86.7 90 48.9
MELO3C024333.2 Cucumis melo HOM05D001849 ORTHO05D004075 1.7e-15 86.3 66 60.6
CsaV3_7G034240 Cucumis sativus L. HOM05D001849 ORTHO05D004075 1.7e-15 86.3 66 60.6
Oeu011098.1 Olea europaea HOM05D001849 ORTHO05D004075 1.7e-15 86.3 90 51.1
Oeu000390.1 Olea europaea HOM05D001849 ORTHO05D004075 2.2e-15 85.9 92 50.0
ECA234G1749 Erigeron canadensis HOM05D001849 ORTHO05D004075 4.8e-15 84.7 90 48.9
Sc15g0000590 Simmondsia chinensis HOM05D001849 ORTHO05D004075 4.8e-15 84.7 90 48.9
Thecc.06G125000 Theobroma cacao HOM05D001849 ORTHO05D004075 4.8e-15 84.7 88 51.1
HanXRQChr10g0311861 Helianthus annuus HOM05D001849 ORTHO05D004075 6.3e-15 84.3 91 47.3
unitig_747.g21722 Utricularia gibba HOM05D001849 ORTHO05D004075 6.3e-15 84.3 89 52.8
Sed0014139 Sechium edule HOM05D001849 ORTHO05D004075 1.4e-14 83.2 66 60.6
Dinv04913 Davidia involucrata HOM05D001849 ORTHO05D004075 1.8e-14 82.8 66 57.6
Lsat_1_v5_gn_1_37801 Lactuca sativa HOM05D001849 ORTHO05D004075 2.4e-14 82.4 85 50.6
TAR622G0522 Trochodendron aralioides HOM05D001849 ORTHO05D004075 2.4e-14 82.4 83 53.0
Aa31LG4G2730 Aethionema arabicum HOM05D001849 ORTHO05D004075 3.1e-14 82.0 82 50.0
ECA247G2654 Erigeron canadensis HOM05D001849 ORTHO05D004075 3.1e-14 82.0 90 46.7
SalBow6G5403 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.1e-14 82.0 89 46.1
SalBow6G6581 Salvia bowleyana HOM05D001849 ORTHO05D004075 3.1e-14 82.0 89 46.1
BcaB03g14988 Brassica carinata HOM05D001849 ORTHO05D004075 5.3e-14 81.3 86 48.8
PSO386G0247 Papaver somniferum HOM05D001849 ORTHO05D004075 5.3e-14 81.3 90 46.7
PGR102G3102 Punica granatum HOM05D001849 ORTHO05D004075 7.0e-14 80.9 86 47.7
ATR0681G273 Amborella trichopoda HOM05D001849 ORTHO05D004075 1.6e-13 79.7 89 48.3
HPP92_011068 Vanilla planifolia HOM05D001849 ORTHO05D004075 2.0e-13 79.3 85 49.4
SGA_v2.0_scaffold71G23886 Striga asiatica HOM05D001849 ORTHO05D004075 2.7e-13 79.0 84 51.2
HanXRQChr04g0094421 Helianthus annuus HOM05D001849 ORTHO05D004075 1.0e-12 77.0 85 43.5
SEGI_18725 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 2.2e-12 75.9 97 41.2
Dinv16157 Davidia involucrata HOM05D001849 ORTHO05D004075 3.8e-12 75.1 66 56.1
PSO724G0283 Papaver somniferum HOM05D001849 ORTHO05D004075 3.8e-12 75.1 93 46.2
vmacro10614 Vaccinium macrocarpon HOM05D001849 ORTHO05D004075 6.5e-12 74.3 64 56.2
Prupe.1G319400 Prunus persica HOM05D001849 ORTHO05D004075 8.5e-12 73.9 71 53.5
SEGI_32525 Sequoiadendron giganteum HOM05D001849 ORTHO05D004075 8.5e-12 73.9 95 42.1
CSS0014980 Camellia sinensis var. sinensis HOM05D001849 ORTHO05D004075 1.1e-11 73.6 66 51.5
Nitab4.5_0004322g0020 Nicotiana tabacum HOM05D001849 ORTHO05D004075 1.5e-11 73.2 90 44.4
CDE06G0789 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 1.9e-11 72.8 82 43.9
HanXRQChr12g0360181 Helianthus annuus HOM05D001849 ORTHO05D004075 1.9e-11 72.8 65 52.3
Rhsim09G0102300 Rhododendron simsii HOM05D001849 ORTHO05D004075 3.2e-11 72.0 65 53.8
Atru.chr11.324 Acer truncatum HOM05D001849 ORTHO05D004075 5.5e-11 71.2 66 53.0
Lj6A751T55 Lonicera japonica HOM05D001849 ORTHO05D004075 1.2e-10 70.1 78 46.2
Zm00001eb203360 Zea mays HOM05D001849 ORTHO05D004075 1.2e-10 70.1 90 43.3
CANSAT01G2891 Cannabis sativa HOM05D001849 ORTHO05D004075 2.7e-10 68.9 66 54.5
Actinidia14933 Actinidia chinensis HOM05D001849 ORTHO05D004075 3.6e-10 68.6 66 48.5
Haze_00674 Corylus avellana HOM05D001849 ORTHO05D004075 3.6e-10 68.6 66 51.5
CDE07G1198 Ceratophyllum demersum HOM05D001849 ORTHO05D004075 4.7e-10 68.2 81 44.4
Nn3g17987 Nelumbo nucifera HOM05D001849 ORTHO05D004075 1.0e-09 67.0 79 45.6
QL01p003145 Quercus lobata HOM05D001849 ORTHO05D004075 1.0e-09 67.0 90 40.0
Cfa015821 Carpinus fangiana HOM05D001849 ORTHO05D004075 5.2e-09 64.7 66 50.0
CiPaw.05G244500 Carya illinoinensis HOM05D001849 ORTHO05D004075 1.2e-08 63.5 146 32.9
Manes.06G063600 Manihot esculenta HOM05D001849 ORTHO05D004075 2.8e-07 58.9 48 54.2
Mapoly0055s0059 Marchantia polymorpha HOM05D001849 ORTHO05D004075 7.0e-06 54.3 56 42.9
Medtr3g035000 Medicago truncatula HOM05D000079 ORTHO05D004075 7.0e-06 54.3 50 64.0


User provided reference genes

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