Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 6.7e-243 843.6 424 100.0
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 7.3e-173 610.9 443 70.4
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 3.8e-169 598.6 454 68.9
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 3.5e-167 592.0 447 69.6
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 4.8e-164 581.6 433 69.3
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 1.2e-162 577.0 436 67.9
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 7.6e-162 574.3 435 67.1
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.3e-161 573.5 435 65.7
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 6.4e-161 571.2 439 68.3
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 6.0e-159 564.7 436 65.1
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.6e-151 540.0 438 63.2
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 1.1e-149 533.9 438 62.6
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 1.0e-145 520.8 437 65.2
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.5e-120 436.4 486 51.2
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 7.2e-120 434.9 336 68.5
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 3.6e-119 432.6 470 51.7
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 1.4e-118 430.6 450 50.4
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 1.5e-117 427.2 485 49.9
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 4.4e-117 425.6 483 49.7
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 3.7e-116 422.5 441 52.2
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 4.1e-115 419.1 345 66.4
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 3.5e-114 416.0 467 49.0
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 5.9e-114 415.2 473 48.0
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.3e-113 414.1 473 47.8
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 1.9e-112 410.2 488 47.5
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 4.2e-112 409.1 467 48.4
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 9.4e-112 407.9 484 48.3
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 1.0e-110 404.4 443 50.6
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 2.3e-110 403.3 505 46.3
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 6.8e-110 401.7 479 48.2
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 6.8e-110 401.7 498 45.4
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.4e-107 394.0 496 45.2
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 7.0e-107 391.7 494 45.5
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 9.1e-107 391.3 496 43.5
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 1.2e-106 391.0 496 43.3
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 2.0e-106 390.2 487 46.2
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 4.5e-106 389.0 481 46.8
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 2.3e-105 386.7 548 42.2
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 5.5e-104 382.1 556 42.1
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 9.5e-104 381.3 443 44.9
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.6e-103 379.4 463 46.7
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 1.8e-102 377.1 488 44.1
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 2.3e-102 376.7 479 43.8
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 2.3e-102 376.7 466 45.7
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 3.0e-102 376.3 439 45.1
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 4.0e-102 375.9 333 56.5
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 6.8e-102 375.2 481 45.1
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 2.6e-101 373.2 486 43.8
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.4e-101 372.5 459 44.9
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 7.5e-101 371.7 464 45.9
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 3.7e-100 369.4 438 50.0
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 1.4e-99 367.5 456 47.6
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 3.1e-99 366.3 330 54.5
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 4.1e-99 365.9 449 45.9
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 4.1e-99 365.9 352 52.8
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 7.0e-99 365.2 311 56.9
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.2e-99 364.8 360 52.2
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.2e-99 364.8 315 55.9
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.2e-98 364.4 475 42.1
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.2e-98 364.4 315 55.6
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 7.8e-98 361.7 533 41.1
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 6.6e-97 358.6 429 45.0
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 7.3e-96 355.1 268 63.8
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 2.8e-95 353.2 268 61.9
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 3.6e-95 352.8 491 41.3
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 6.1e-95 352.1 469 41.8
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 6.8e-94 348.6 365 49.9
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 2.0e-93 347.1 452 43.8
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.4e-93 346.3 244 64.8
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 5.8e-93 345.5 395 46.6
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 7.5e-93 345.1 333 54.4
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 9.8e-93 344.7 325 55.7
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.3e-92 344.4 244 64.8
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 3.7e-92 342.8 494 39.9
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 6.4e-92 342.0 419 46.1
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 7.0e-91 338.6 450 43.3
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 7.0e-91 338.6 501 38.9
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 7.0e-91 338.6 489 40.1
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 1.2e-90 337.8 486 40.9
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.6e-90 337.4 495 40.8
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 6.0e-90 335.5 476 41.8
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.0e-89 334.7 451 44.1
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 2.3e-89 333.6 484 38.2
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 3.0e-89 333.2 386 45.9
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 5.0e-89 332.4 476 42.2
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 8.6e-89 331.6 476 42.4
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 2.1e-87 327.0 495 39.0
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 2.3e-86 323.6 470 39.6
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 4.4e-85 319.3 497 39.4
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 5.8e-85 318.9 496 39.5
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 5.8e-85 318.9 435 39.5
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 6.4e-84 315.5 319 48.9
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 1.9e-83 313.9 256 58.2
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.9e-83 313.9 454 42.3
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 4.1e-83 312.8 417 43.4
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 7.8e-82 308.5 377 46.2
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.3e-81 307.8 464 40.5
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 1.7e-81 307.4 465 41.3
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 5.1e-81 305.8 310 52.9
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 6.6e-81 305.4 365 46.3
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 1.1e-80 304.7 310 52.9
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 5.6e-80 302.4 267 53.2
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 6.4e-76 288.9 488 36.9
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.1e-75 288.1 475 38.1
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 1.4e-75 287.7 488 37.1
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 2.1e-74 283.9 507 35.7
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 7.8e-74 282.0 402 41.5
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 1.6e-71 274.2 447 40.9
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 6.2e-71 272.3 262 51.1
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 1.4e-70 271.2 275 50.9
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 4.0e-70 269.6 302 47.7
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 6.4e-68 262.3 200 59.0
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.4e-68 262.3 457 37.4
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 2.1e-66 257.3 247 51.8
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 2.7e-66 256.9 306 44.8
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 3.5e-66 256.5 435 38.4
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.9e-64 250.8 241 50.6
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.5e-61 241.1 420 37.9
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.7e-60 237.7 381 39.6
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.1e-56 224.9 339 40.4
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.5e-56 224.6 242 45.0
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.6e-55 221.1 184 55.4
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 3.6e-55 219.9 358 35.5
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 5.3e-54 216.1 291 43.3
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 2.0e-53 214.2 354 34.5
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 6.4e-44 182.6 133 58.6
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.4e-43 181.4 290 42.4
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 6.2e-39 166.0 220 42.3
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 1.8e-33 147.9 184 35.9
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 3.1e-30 137.1 114 55.3
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 2.0e-24 117.9 432 28.0
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 7.4e-24 115.9 144 43.1
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.8e-20 103.6 159 37.1
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 1.2e-18 98.6 114 38.6
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 5.1e-17 93.2 74 56.8
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 1.1e-14 85.5 67 61.2
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 2.0e-13 81.3 191 35.6
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 4.5e-13 80.1 65 47.7
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 5.9e-13 79.7 235 28.5
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 3.8e-12 77.0 88 43.2
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 3.8e-12 77.0 63 46.0
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 8.5e-12 75.9 229 31.0
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 1.5e-11 75.1 229 29.7
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 3.1e-06 57.4 84 39.3
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.1e-06 57.4 86 38.4
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.1e-06 57.4 93 36.6


User provided reference genes

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