Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 8.1e-126 453.8 229 100.0
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.3e-43 180.6 93 98.9
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 8.3e-38 161.4 85 96.5
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 2.0e-36 156.8 93 82.8
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 2.7e-36 156.4 97 79.4
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 3.6e-33 146.0 92 78.3
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 1.4e-32 144.1 92 77.2
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 1.4e-32 144.1 92 75.0
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 2.3e-32 143.3 92 76.1
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 8.9e-32 141.4 92 72.8
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 8.9e-32 141.4 92 75.0
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.7e-30 137.1 92 71.7
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.7e-30 137.1 92 71.7
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 3.7e-30 136.0 92 73.9
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.1e-29 134.4 97 68.0
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 4.1e-29 132.5 94 68.1
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 1.6e-28 130.6 99 63.6
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 6.0e-28 128.6 92 67.4
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 1.0e-27 127.9 92 68.5
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.3e-27 126.7 92 67.4
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 3.9e-27 125.9 92 67.4
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 1.5e-26 124.0 92 66.3
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 3.3e-26 122.9 105 58.1
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 3.3e-26 122.9 91 64.8
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 4.3e-26 122.5 86 68.6
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 5.6e-26 122.1 92 65.2
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 5.6e-26 122.1 92 64.1
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 9.5e-26 121.3 94 63.8
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 1.2e-25 120.9 92 62.0
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 3.6e-25 119.4 92 62.0
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 3.6e-25 119.4 91 62.6
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 4.7e-25 119.0 92 60.9
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 8.1e-25 118.2 91 64.8
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.1e-24 117.9 91 62.6
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 1.4e-24 117.5 91 62.6
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.4e-24 117.5 97 58.8
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.4e-24 117.5 91 60.4
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 1.8e-24 117.1 91 61.5
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 2.3e-24 116.7 91 60.4
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 2.3e-24 116.7 92 62.0
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.3e-24 116.7 91 60.4
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 3.1e-24 116.3 92 59.8
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 3.1e-24 116.3 91 63.7
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 4.0e-24 115.9 91 60.4
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 6.8e-24 115.2 91 58.2
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 6.8e-24 115.2 91 61.5
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 8.9e-24 114.8 91 60.4
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 8.9e-24 114.8 91 60.4
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 1.2e-23 114.4 91 59.3
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.2e-23 114.4 97 57.7
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 1.2e-23 114.4 91 59.3
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 1.5e-23 114.0 91 58.2
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 1.5e-23 114.0 87 62.1
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 2.0e-23 113.6 91 61.5
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.6e-23 113.2 91 60.4
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.4e-23 112.8 91 60.4
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 4.4e-23 112.5 92 58.7
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 1.3e-22 110.9 92 57.6
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 1.3e-22 110.9 92 57.6
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 1.3e-22 110.9 91 56.0
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 1.3e-22 110.9 91 57.1
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 1.3e-22 110.9 91 57.1
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 1.3e-22 110.9 93 57.0
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.7e-22 110.5 91 59.3
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 1.7e-22 110.5 92 58.7
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.7e-22 110.5 92 58.7
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 2.2e-22 110.2 91 60.4
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 4.9e-22 109.0 91 60.4
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 8.3e-22 108.2 91 54.9
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 1.4e-21 107.5 89 58.4
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 1.9e-21 107.1 89 58.4
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.9e-21 107.1 92 57.6
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 1.9e-21 107.1 92 57.6
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.4e-21 106.7 91 56.0
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 2.4e-21 106.7 92 57.6
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.4e-21 106.7 87 54.0
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 3.2e-21 106.3 90 57.8
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 5.4e-21 105.5 96 55.2
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 5.4e-21 105.5 96 55.2
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 9.2e-21 104.8 91 57.1
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 9.2e-21 104.8 91 58.2
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 9.2e-21 104.8 92 54.3
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 1.2e-20 104.4 91 54.9
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.2e-20 104.4 91 56.0
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 1.6e-20 104.0 92 55.4
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.1e-20 103.6 88 53.4
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 2.7e-20 103.2 93 54.8
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 3.5e-20 102.8 92 53.3
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 3.5e-20 102.8 92 55.4
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 4.6e-20 102.4 92 55.4
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 4.6e-20 102.4 96 54.2
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 4.6e-20 102.4 89 55.1
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 6.0e-20 102.1 90 55.6
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 6.0e-20 102.1 92 56.5
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 6.0e-20 102.1 89 53.9
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 7.8e-20 101.7 92 54.3
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 1.0e-19 101.3 91 54.9
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.0e-19 101.3 92 52.2
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.3e-19 100.9 92 54.3
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 1.3e-19 100.9 99 49.5
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 1.7e-19 100.5 81 58.0
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 3.0e-19 99.8 92 55.4
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 3.0e-19 99.8 92 55.4
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 3.0e-19 99.8 92 55.4
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 3.0e-19 99.8 92 55.4
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 5.1e-19 99.0 89 50.6
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 6.6e-19 98.6 92 56.5
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 1.1e-18 97.8 108 48.1
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 1.9e-18 97.1 85 52.9
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 2.5e-18 96.7 92 54.3
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 3.3e-18 96.3 88 50.0
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 4.3e-18 95.9 83 51.8
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 7.3e-18 95.1 92 50.0
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 9.6e-18 94.7 88 50.0
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 9.6e-18 94.7 88 50.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 1.2e-17 94.4 90 53.3
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 1.2e-17 94.4 92 46.7
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 1.2e-17 94.4 92 50.0
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.1e-17 93.6 89 50.6
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 2.1e-17 93.6 92 52.2
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 2.8e-17 93.2 83 55.4
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 2.8e-17 93.2 83 55.4
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 2.8e-17 93.2 83 55.4
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 3.6e-17 92.8 75 60.0
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 3.6e-17 92.8 99 52.5
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 8.1e-17 91.7 92 48.9
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 8.1e-17 91.7 91 53.8
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.8e-16 90.5 70 65.7
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 2.4e-16 90.1 92 47.8
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 2.4e-16 90.1 91 52.7
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 5.2e-16 89.0 91 48.4
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 2.0e-15 87.0 89 49.4
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 3.4e-15 86.3 81 51.9
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 9.9e-15 84.7 108 45.4
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 2.2e-14 83.6 83 50.6
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 3.8e-14 82.8 92 46.7
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 8.4e-14 81.6 99 44.4
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.9e-13 80.5 98 41.8
Phvul.001G219600 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.2e-13 79.7 46 84.8
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 9.3e-13 78.2 92 45.7
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 1.0e-11 74.7 67 52.2
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 1.1e-10 71.2 97 41.2
GSVIVG01008529001 Vitis vinifera HOM05D004569 ORTHO05D005333 5.6e-10 68.9 52 61.5
FAN18G3311 Fragaria x ananassa HOM05D004569 ORTHO05D005333 9.6e-10 68.2 92 43.5
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 8.1e-09 65.1 76 43.4
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 6.9e-08 62.0 71 40.8
SalBow2G3500 Salvia bowleyana HOM05D000011 ORTHO05D000018 2.0e-07 60.5 43 65.1
Lj6C645G5 Lonicera japonica HOM05D004569 ORTHO05D005333 4.4e-07 59.3 47 55.3
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 3.8e-06 56.2 49 51.0
vmacro08367 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 8.4e-06 55.1 47 57.4


User provided reference genes

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