Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 0.0e+00 1437.2 701 100.0
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.7e-203 713.4 715 57.1
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 7.1e-197 691.4 723 54.2
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 7.8e-196 688.0 701 55.6
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 3.3e-194 682.6 721 54.2
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 9.2e-189 664.5 717 54.3
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 1.4e-181 640.6 661 55.8
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 6.6e-179 631.7 683 52.4
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 3.4e-175 619.4 668 53.6
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 7.1e-173 611.7 633 56.1
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.5e-167 594.0 705 50.6
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.5e-165 586.6 737 48.8
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.1e-164 583.6 735 47.6
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 3.3e-162 576.2 735 47.1
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 3.2e-157 559.7 663 50.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 8.2e-153 545.0 722 45.8
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 8.2e-153 545.0 722 45.8
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.6e-151 540.0 719 45.5
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 3.0e-147 526.6 706 43.3
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 1.0e-142 511.5 715 43.1
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 2.9e-142 510.0 642 46.6
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.4e-141 507.7 722 42.9
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 6.1e-140 502.3 712 42.6
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 2.6e-138 496.9 590 47.1
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 9.7e-138 495.0 725 42.2
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 2.8e-137 493.4 704 44.2
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 8.2e-137 491.9 724 42.0
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.8e-136 490.7 729 41.8
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.5e-135 487.6 714 41.9
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 8.5e-134 481.9 728 41.6
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.9e-133 480.7 830 38.8
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.9e-133 480.7 726 41.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 3.2e-133 479.9 727 42.1
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 5.5e-133 479.2 721 41.6
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.1e-132 477.2 727 42.0
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 2.7e-132 476.9 708 41.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 2.3e-131 473.8 742 40.6
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 3.9e-131 473.0 606 44.7
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 8.8e-131 471.9 703 40.8
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 4.4e-130 469.5 739 39.2
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 1.3e-129 468.0 666 43.8
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.2e-129 467.2 718 42.3
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 6.3e-129 465.7 685 43.6
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 2.7e-124 450.3 705 39.9
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 2.7e-124 450.3 714 40.2
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.6e-124 449.9 723 40.0
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 4.7e-124 449.5 705 39.9
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 5.2e-123 446.0 703 39.7
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 5.2e-123 446.0 670 41.5
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 6.8e-123 445.7 669 41.4
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 7.5e-122 442.2 678 40.9
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 9.8e-122 441.8 661 42.8
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 9.8e-122 441.8 670 40.9
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.8e-121 439.5 681 39.6
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 5.4e-120 436.0 672 39.6
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.6e-119 434.5 652 40.6
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 7.2e-117 425.6 691 39.1
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 9.4e-117 425.2 707 37.8
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.6e-116 424.5 675 40.9
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 2.7e-116 423.7 643 39.8
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.4e-115 421.4 709 38.8
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.0e-115 420.2 675 40.9
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 5.2e-115 419.5 675 40.4
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 6.8e-115 419.1 690 40.9
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 8.8e-115 418.7 707 39.2
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 3.4e-114 416.8 701 39.9
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 4.4e-114 416.4 698 37.8
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 8.3e-113 412.1 698 39.4
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 4.1e-112 409.8 673 41.5
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.2e-111 408.3 654 39.8
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 7.7e-111 405.6 652 39.4
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 2.3e-110 404.1 672 39.3
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 1.9e-109 401.0 667 39.4
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 4.2e-109 399.8 708 37.4
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.2e-108 398.3 721 37.2
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.6e-108 397.9 689 37.6
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 1.6e-108 397.9 598 42.0
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 8.0e-108 395.6 675 38.5
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 4.9e-105 386.3 690 36.8
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 7.0e-104 382.5 662 38.1
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 7.0e-104 382.5 512 45.1
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 1.6e-103 381.3 752 35.1
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.0e-102 378.6 569 39.9
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.7e-102 377.9 705 36.9
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 8.6e-102 375.6 631 37.9
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 3.1e-99 367.1 680 35.3
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 9.8e-98 362.1 699 35.9
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.3e-97 361.7 696 34.3
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.9e-96 357.8 695 35.4
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 6.0e-95 352.8 399 48.9
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 6.6e-94 349.4 656 36.9
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.9e-93 347.8 659 36.6
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 4.3e-93 346.7 662 35.0
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 4.3e-93 346.7 408 44.6
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 2.8e-92 344.0 655 37.3
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 3.6e-92 343.6 667 35.5
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 6.2e-92 342.8 654 37.0
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.8e-91 341.3 669 35.0
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 3.1e-91 340.5 641 36.0
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 5.2e-91 339.7 553 41.2
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 4.4e-90 336.7 571 37.0
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 2.9e-89 334.0 533 41.1
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.2e-88 330.5 683 35.4
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 7.8e-87 325.9 616 36.0
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 7.8e-87 325.9 518 39.4
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 3.9e-86 323.6 641 34.2
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 5.1e-86 323.2 444 44.4
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 6.6e-86 322.8 492 40.4
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 3.3e-85 320.5 686 33.1
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 5.2e-83 313.2 634 34.1
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 6.8e-83 312.8 355 50.7
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 5.6e-77 293.1 553 35.3
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 5.6e-77 293.1 389 44.2
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 3.0e-70 270.8 547 32.9
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.1e-70 270.0 310 46.5
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.3e-65 255.4 455 36.3
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 3.5e-63 247.3 695 28.9
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 6.0e-63 246.5 366 41.5
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 4.8e-60 236.9 703 29.0
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 6.4e-57 226.5 652 29.8
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 2.5e-53 214.5 339 38.6
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.3e-53 213.8 488 31.4
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 2.6e-50 204.5 667 28.6
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.2e-47 195.7 295 41.4
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 2.1e-47 194.9 368 38.0
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 6.1e-39 166.8 164 51.8
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.5e-37 161.4 596 25.2
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 8.2e-36 156.4 461 29.1
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.0e-34 151.8 105 63.8
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 1.3e-33 149.1 203 45.8
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.9e-33 147.9 135 51.1
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 8.5e-33 146.4 105 62.9
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 2.0e-29 135.2 440 27.3
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.4e-29 133.3 267 36.3
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.1e-27 129.4 210 37.6
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.8e-27 128.6 103 55.3
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.9e-26 123.6 538 24.0
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 1.3e-25 122.5 445 27.0
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 6.7e-22 110.2 265 29.4
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.0e-21 108.6 109 50.5
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.2e-18 99.4 229 31.0
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.6e-18 99.0 199 36.7
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 4.4e-13 80.9 148 32.4
arahy.Tifrunner.gnm1.ann1.ZE0ACQ Arachis hypogaea HOM05D000603 ORTHO05D008734 9.7e-13 79.7 65 55.4
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.7e-12 77.8 192 28.1
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 1.2e-10 72.8 205 28.8
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.0e-09 69.7 85 38.8
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 3.8e-09 67.8 76 43.4
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 6.5e-09 67.0 61 52.5
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 8.5e-09 66.6 149 33.6
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 2.3e-06 58.5 204 26.0


User provided reference genes

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