Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g062110 Medicago truncatula HOM05D013440 ORTHO05D013937 1.1e-165 586.6 305 100.0
Medtr1g111560 Medicago truncatula HOM05D001605 ORTHO05D007904 3.9e-43 179.5 108 85.2
TPR.G26273 Trifolium pratense HOM05D001605 ORTHO05D007904 2.2e-38 163.7 128 68.0
Ca_25646_v3 Cicer arietinum L. HOM05D001605 ORTHO05D007904 2.5e-37 160.2 106 76.4
Psat6g230120 Pisum sativum HOM05D001605 ORTHO05D007904 7.2e-37 158.7 108 76.9
Phvul.007G024600 Phaseolus vulgaris HOM05D001605 ORTHO05D007904 9.1e-32 141.7 108 66.7
arahy.Tifrunner.gnm1.ann1.MQG1NS Arachis hypogaea HOM05D001605 ORTHO05D007904 1.0e-30 138.3 108 65.7
Glyma.20G112800 Glycine max HOM05D001605 ORTHO05D007904 5.0e-30 136.0 108 62.0
arahy.Tifrunner.gnm1.ann1.NQY93W Arachis hypogaea HOM05D001605 ORTHO05D007904 6.5e-30 135.6 108 63.9
Glyma.10G276900 Glycine max HOM05D001605 ORTHO05D007904 1.1e-29 134.8 108 62.0
Lalb_Chr06g0166251 Lupinus albus HOM05D001605 ORTHO05D007904 1.9e-29 134.0 108 64.8
Cc02_g10740 Coffea canephora HOM05D001605 ORTHO05D007904 2.7e-28 130.2 108 58.3
Lj5g0010311 Lotus japonicus HOM05D001605 ORTHO05D007904 6.1e-28 129.0 109 63.3
Ciclev10030480m.g Citrus clementina HOM05D001605 ORTHO05D007904 1.8e-27 127.5 108 60.2
Gohir.D10G208651 Gossypium hirsutum HOM05D001605 ORTHO05D007904 3.0e-27 126.7 108 58.3
Eucgr.J01043 Eucalyptus grandis HOM05D001605 ORTHO05D007904 1.1e-26 124.8 108 55.6
Duzib114G0274 Durio zibethinus HOM05D001605 ORTHO05D007904 1.7e-25 120.9 108 55.6
Thecc.10G086900 Theobroma cacao HOM05D001605 ORTHO05D007904 1.7e-25 120.9 108 54.6
Dinv31241 Davidia involucrata HOM05D001605 ORTHO05D007904 2.8e-25 120.2 108 55.6
Cfa001787 Carpinus fangiana HOM05D001605 ORTHO05D007904 3.7e-25 119.8 115 55.7
QL08p053377 Quercus lobata HOM05D001605 ORTHO05D007904 3.7e-25 119.8 108 55.6
Manes.07G094600 Manihot esculenta HOM05D001605 ORTHO05D007904 4.8e-25 119.4 108 56.5
ClCG08G007840 Citrullus lanatus HOM05D001605 ORTHO05D007904 8.2e-25 118.6 108 55.6
CiPaw.01G266900 Carya illinoinensis HOM05D001605 ORTHO05D007904 1.1e-24 118.2 108 53.7
SGA_v2.0_scaffold62G21379 Striga asiatica HOM05D001605 ORTHO05D007904 1.4e-24 117.9 108 52.8
Atru.chr12.877 Acer truncatum HOM05D001605 ORTHO05D007904 1.8e-24 117.5 112 56.2
Migut.F01946 Erythranthe guttata HOM05D001605 ORTHO05D007904 2.4e-24 117.1 109 53.2
GSVIVG01016203001 Vitis vinifera HOM05D001605 ORTHO05D007904 2.4e-24 117.1 107 55.1
Gorai.011G234600 Gossypium raimondii HOM05D001605 ORTHO05D007904 4.1e-24 116.3 108 54.6
Sed0007773 Sechium edule HOM05D001605 ORTHO05D007904 9.1e-24 115.2 108 52.8
SalBow4G1337 Salvia bowleyana HOM05D001605 ORTHO05D007904 1.6e-23 114.4 112 51.8
Gohir.A10G201000 Gossypium hirsutum HOM05D001605 ORTHO05D007904 2.0e-23 114.0 108 53.7
Peaxi162Scf00145g00221 Petunia axillaris HOM05D001605 ORTHO05D007904 2.0e-23 114.0 111 52.3
Potri.010G228766 Populus trichocarpa HOM05D001605 ORTHO05D007904 2.0e-23 114.0 108 55.6
Medtr3g005890 Medicago truncatula HOM05D013440 ORTHO05D013937 2.6e-23 113.6 78 92.3
COL.COLO4_09867 Corchorus olitorius HOM05D001605 ORTHO05D007904 3.5e-23 113.2 113 51.3
Potri.008G032800 Populus trichocarpa HOM05D001605 ORTHO05D007904 5.9e-23 112.5 108 56.5
TWI15G0385 Tripterygium wilfordii HOM05D001605 ORTHO05D007904 5.9e-23 112.5 108 51.9
Nitab4.5_0002285g0040 Nicotiana tabacum HOM05D001605 ORTHO05D007904 1.3e-22 111.3 111 51.4
Nitab4.5_0004987g0010 Nicotiana tabacum HOM05D001605 ORTHO05D007904 1.3e-22 111.3 111 51.4
RcHm_v2.0_Chr1g0362241 Rosa chinensis HOM05D001605 ORTHO05D007904 2.9e-22 110.2 144 43.8
Aa31LG1G21060 Aethionema arabicum HOM05D001605 ORTHO05D007904 6.5e-22 109.0 108 48.1
PGR044G1910 Punica granatum HOM05D001605 ORTHO05D007904 6.5e-22 109.0 129 46.5
Sabra08G0021700 Salix brachista HOM05D001605 ORTHO05D007904 6.5e-22 109.0 108 55.6
CAN.G459.35 Capsicum annuum HOM05D001605 ORTHO05D007904 4.2e-21 106.3 111 48.6
HanXRQChr14g0456521 Helianthus annuus HOM05D001605 ORTHO05D007904 4.2e-21 106.3 108 49.1
DCAR_024079 Daucus carota HOM05D001605 ORTHO05D007904 1.2e-20 104.8 108 50.0
Solyc11g008150.3 Solanum lycopersicum HOM05D001605 ORTHO05D007904 1.2e-20 104.8 111 48.6
Sopen11g003960 Solanum pennellii HOM05D001605 ORTHO05D007904 1.6e-20 104.4 111 48.6
ECA238G1123 Erigeron canadensis HOM05D001605 ORTHO05D007904 6.1e-20 102.4 108 49.1
AUR62027342 Chenopodium quinoa HOM05D001605 ORTHO05D007904 1.0e-19 101.7 112 45.5
CSS0045023 Camellia sinensis var. sinensis HOM05D001605 ORTHO05D007904 1.4e-19 101.3 108 48.1
Sc09g0005960 Simmondsia chinensis HOM05D001605 ORTHO05D007904 1.4e-19 101.3 110 50.0
AL6G13920 Arabidopsis lyrata HOM05D001605 ORTHO05D007904 1.8e-19 100.9 116 44.0
Lsat_1_v5_gn_2_112001 Lactuca sativa HOM05D001605 ORTHO05D007904 3.0e-19 100.1 108 49.1
Medtr1g103480 Medicago truncatula HOM05D013440 ORTHO05D013937 3.0e-19 100.1 75 85.3
Sp6g38450 Schrenkiella parvula HOM05D001605 ORTHO05D007904 4.0e-19 99.8 124 45.2
THA.LOC104816433 Tarenaya hassleriana HOM05D001605 ORTHO05D007904 4.0e-19 99.8 108 48.1
Rhsim09G0146800 Rhododendron simsii HOM05D001605 ORTHO05D007904 6.7e-19 99.0 108 49.1
Aqoxy2G01687_Aqoxy2G01688 Aquilegia oxysepala HOM05D001605 ORTHO05D007904 2.0e-18 97.4 102 49.0
CARHR208990 Cardamine hirsuta HOM05D001605 ORTHO05D007904 4.4e-18 96.3 114 42.1
MD07G1167800 Malus domestica HOM05D001605 ORTHO05D007904 7.5e-18 95.5 75 57.3
Medtr5g046450 Medicago truncatula HOM05D013440 ORTHO05D013937 7.5e-18 95.5 68 91.2
Prupe.2G206300 Prunus persica HOM05D001605 ORTHO05D007904 7.5e-18 95.5 72 61.1
Hund17736 Selenicereus undatus HOM05D001605 ORTHO05D007904 7.5e-18 95.5 145 37.2
Actinidia18543 Actinidia chinensis HOM05D001605 ORTHO05D007904 1.7e-17 94.4 116 44.8
Ah.05g168450 Amaranthus hybridus HOM05D001605 ORTHO05D007904 1.7e-17 94.4 111 45.0
Rhsim03G0113100 Rhododendron simsii HOM05D001605 ORTHO05D007904 1.7e-17 94.4 118 41.5
AT5G04290 Arabidopsis thaliana HOM05D001605 ORTHO05D007904 2.2e-17 94.0 131 37.4
vmacro10246 Vaccinium macrocarpon HOM05D001807 ORTHO05D002044 2.8e-17 93.6 108 44.4
MD01G1100800 Malus domestica HOM05D001605 ORTHO05D007904 3.7e-17 93.2 75 54.7
vmacro07188 Vaccinium macrocarpon HOM05D001605 ORTHO05D007904 6.3e-17 92.4 147 36.7
unitig_37.g12317 Utricularia gibba HOM05D001605 ORTHO05D007904 1.4e-16 91.3 108 46.3
A10p31880 Brassica napus HOM05D001605 ORTHO05D007904 2.4e-16 90.5 124 43.5
FvH4_7g18411 Fragaria vesca HOM05D001605 ORTHO05D007904 2.4e-16 90.5 72 61.1
FAN01G1699 Fragaria x ananassa HOM05D001605 ORTHO05D007904 2.4e-16 90.5 72 61.1
FAN03G0306 Fragaria x ananassa HOM05D001605 ORTHO05D007904 2.4e-16 90.5 72 61.1
FAN06G2826 Fragaria x ananassa HOM05D001605 ORTHO05D007904 2.4e-16 90.5 72 61.1
FAN10G1517 Fragaria x ananassa HOM05D001605 ORTHO05D007904 2.4e-16 90.5 72 61.1
Carub.0006s0324 Capsella rubella HOM05D001605 ORTHO05D007904 3.1e-16 90.1 115 40.9
Medtr2g006440 Medicago truncatula HOM05D000246 ORTHO05D005396 3.1e-16 90.1 72 68.1
C09p72590 Brassica napus HOM05D001605 ORTHO05D007904 9.1e-16 88.6 116 43.1
BolC9t59999H Brassica oleracea HOM05D001605 ORTHO05D007904 9.1e-16 88.6 116 43.1
EL10Ac7g16663 Beta vulgaris HOM05D001605 ORTHO05D007904 1.2e-15 88.2 65 60.0
BraA10t45232Z Brassica rapa HOM05D001605 ORTHO05D007904 2.7e-15 87.0 116 44.0
CsaV3_2G021080 Cucumis sativus L. HOM05D001605 ORTHO05D007904 4.5e-15 86.3 109 40.4
Nn2g13838 Nelumbo nucifera HOM05D001605 ORTHO05D007904 5.9e-15 85.9 118 41.5
Thhalv10015856m.g Eutrema salsugineum HOM05D001605 ORTHO05D007904 2.9e-14 83.6 72 58.3
Lj2A22T71 Lonicera japonica HOM05D001605 ORTHO05D007904 2.9e-14 83.6 103 46.6
Zm00001eb292250 Zea mays HOM05D001605 ORTHO05D007904 1.9e-13 80.9 119 41.2
Zm00001eb352910 Zea mays HOM05D001605 ORTHO05D007904 9.4e-13 78.6 119 39.5
BcaC06g32133 Brassica carinata HOM05D001605 ORTHO05D007904 3.6e-12 76.6 123 36.6
TAR636G1950 Trochodendron aralioides HOM05D001605 ORTHO05D007904 1.0e-11 75.1 63 50.8
Ca_00062_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005396 1.4e-11 74.7 72 54.2
DCAR_006401 Daucus carota HOM05D001605 ORTHO05D007904 5.2e-11 72.8 110 39.1
Psat1g222120 Pisum sativum HOM05D000246 ORTHO05D005396 5.2e-11 72.8 71 56.3
MBI01_g12684_MAGBIO Magnolia biondii HOM05D001605 ORTHO05D007904 2.6e-10 70.5 104 39.4
Medtr3g463980 Medicago truncatula HOM05D013440 ORTHO05D013937 4.4e-10 69.7 43 88.4
PSO339G4771 Papaver somniferum HOM05D001605 ORTHO05D007904 1.3e-09 68.2 59 47.5
PSO063G0750 Papaver somniferum HOM05D001605 ORTHO05D007904 3.7e-09 66.6 59 47.5
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 4.8e-09 66.2 71 50.7
TPR.G2105 Trifolium pratense HOM05D000246 ORTHO05D005396 1.1e-08 65.1 70 52.9
Medtr6g040280 Medicago truncatula HOM05D002360 ORTHO05D013937 2.4e-08 63.9 70 71.4
ATR0665G492 Amborella trichopoda HOM05D001605 ORTHO05D007904 4.1e-08 63.2 73 42.5
Lalb_Chr20g0123591 Lupinus albus HOM05D000246 ORTHO05D005396 1.2e-07 61.6 68 47.1
TPR.G7972 Trifolium pratense HOM05D013440 ORTHO05D013937 1.2e-07 61.6 70 57.1
Medtr2g026970 Medicago truncatula HOM05D013440 ORTHO05D013937 1.6e-07 61.2 61 57.4
Thhalv10015730m.g Eutrema salsugineum HOM05D001605 ORTHO05D007904 2.7e-07 60.5 116 37.1
HPP92_015895 Vanilla planifolia HOM05D001605 ORTHO05D007904 4.5e-07 59.7 115 34.8
Phvul.006G216200 Phaseolus vulgaris HOM05D000246 ORTHO05D005396 5.9e-07 59.3 71 46.5
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 5.9e-07 59.3 70 55.7
Actinidia38878 Actinidia chinensis HOM05D001605 ORTHO05D013937 2.9e-06 57.0 44 59.1
Medtr0321s0040 Medicago truncatula HOM05D000246 ORTHO05D265734 5.0e-06 56.2 34 73.5
Glyma.08G188100 Glycine max HOM05D000246 ORTHO05D005396 6.5e-06 55.8 73 46.6
Lj6g0022943 Lotus japonicus HOM05D000246 ORTHO05D005396 6.5e-06 55.8 70 44.3
arahy.Tifrunner.gnm1.ann1.P64QHW Arachis hypogaea HOM05D000246 ORTHO05D005396 8.6e-06 55.5 70 41.4
arahy.Tifrunner.gnm1.ann1.V2A8TE Arachis hypogaea HOM05D000246 ORTHO05D005396 8.6e-06 55.5 70 41.4
HPP92_015889 Vanilla planifolia HOM05D001605 ORTHO05D007904 8.6e-06 55.5 57 45.6


User provided reference genes

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