Gene: Sopen11g003960

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g003960
  • Transcript Identifier Sopen11g003960.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 2457688-2468332 : negative

Gene Family Information

  • ID HOM05D001605
  • #Genes/#Species 401/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g003960.1

Descriptions

  • Description Encodes SPT5-Like, a member of the nuclear SPT5 (Suppressor of Ty insertion 5) RNA polymerase (RNAP) elongation factor family that is characterized by the presence of a carboxy-terminal extension with more than 40 WG/GW motifs. Interacts with AGO4. Required for RNA-directed DNA methylation. | kow domain-containing transcription factor 1 (KTF1) | CONTAINS InterPro DOMAIN/s: KOW , Transcription elongation factor Spt5, NGN domain | BEST Arabidopsis thaliana protein match is: global transcription factor group A2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0032784
IEA
InterProregulation of DNA-templated transcription, elongation
GO:0016458
ISO
PLAZA Integrative Orthologygene silencing AT5G04290
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT5G04290
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT5G04290
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT5G04290

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G04290
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G04290
GO:0003682
ISO
PLAZA Integrative Orthologychromatin binding AT5G04290

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT5G04290

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006645 NusG, N-terminal
IPR005824 KOW
IPR039659 Transcription elongation factor SPT5
IPR014722 Ribosomal protein L2, domain 2
IPR041973 Spt5, KOW domain repeat 1
IPR039385 NGN domain, eukaryotic
IPR005100 NGN domain
IPR036735 NusG, N-terminal domain superfamily
IPR041977 Spt5, KOW domain repeat 4
Mapman id Description
12.5.1.5 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RNA polymerase-V auxiliary factor (KTF1/SPT5L)