Gene: Solyc11g008150.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g008150.3
  • Transcript Identifier Solyc11g008150.3.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 2450009-2460477 : negative

Gene Family Information

  • ID HOM05D001605
  • #Genes/#Species 401/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g008150.3.1
  • uniprot A0A3Q7IQ33
  • gene_id Solyc11g008150

Descriptions

  • Description Transcription elongation factor Spt5 (AHRD V3.3 *-* A0A200R5H6_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006357
IBA
IEA
GOA Databaseregulation of transcription by RNA polymerase II
GO:0006357
IEA
InterProregulation of transcription by RNA polymerase II
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT5G04290
GO:0080188
ISO
PLAZA Integrative Orthologygene silencing by RNA-directed DNA methylation AT5G04290
GO:0006306
ISO
PLAZA Integrative OrthologyDNA methylation AT5G04290
GO:0016458
ISO
PLAZA Integrative Orthologygene silencing AT5G04290
GO:0006368
IBA
GOA Databasetranscription elongation from RNA polymerase II promoter
GO:0032784
IEA
GOA Databaseregulation of DNA-templated transcription, elongation
GO:0032784
IEA
InterProregulation of DNA-templated transcription, elongation
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003682
ISO
PLAZA Integrative Orthologychromatin binding AT5G04290
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G04290
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G04290
GO:0003729
IBA
GOA DatabasemRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT5G04290
GO:0032044
IBA
GOA DatabaseDSIF complex
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039659 Transcription elongation factor SPT5
IPR006645 NusG, N-terminal
IPR041973 Spt5, KOW domain repeat 1
IPR039385 NGN domain, eukaryotic
IPR036735 NusG, N-terminal domain superfamily
IPR014722 Ribosomal protein L2, domain 2
IPR041977 Spt5, KOW domain repeat 4
IPR005824 KOW
IPR005100 NGN domain
Mapman id Description
12.5.1.5 Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.RNA polymerase-V auxiliary factor (KTF1/SPT5L)