Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g027430 Medicago truncatula HOM05D001363 ORTHO05D259602 4.3e-119 431.4 230 100.0
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 1.1e-16 91.3 258 31.8
Ca_10819_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 1.8e-08 63.9 96 43.8
MBI11_g21320_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 9.0e-08 61.6 61 57.4
Medtr1g102670 Medicago truncatula HOM05D001363 ORTHO05D002212 1.2e-07 61.2 63 54.0
Nn1g02467 Nelumbo nucifera HOM05D001363 ORTHO05D002212 2.6e-07 60.1 61 54.1
Os11g0146800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 2.6e-07 60.1 61 55.7
Os12g0143800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 2.6e-07 60.1 61 55.7
arahy.Tifrunner.gnm1.ann1.QPK5VU Arachis hypogaea HOM05D001363 ORTHO05D002212 3.4e-07 59.7 61 54.1
Cpa.g.sc44.128 Carica papaya HOM05D001363 ORTHO05D002212 3.4e-07 59.7 63 52.4
Ca_28386_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 3.4e-07 59.7 96 42.7
Psat6g203440 Pisum sativum HOM05D001363 ORTHO05D002212 3.4e-07 59.7 96 41.7
TAR636G1108 Trochodendron aralioides HOM05D001363 ORTHO05D002212 3.4e-07 59.7 61 54.1
GSVIVG01018051001 Vitis vinifera HOM05D001363 ORTHO05D002212 5.8e-07 58.9 61 52.5
ATR0665G613 Amborella trichopoda HOM05D001363 ORTHO05D002212 7.6e-07 58.5 92 43.5
CDE10G0279 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 7.6e-07 58.5 61 52.5
Zm00001eb163340 Zea mays HOM05D001363 ORTHO05D002212 7.6e-07 58.5 61 52.5
Ah.04g154310 Amaranthus hybridus HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 52.5
BcaB03g14645 Brassica carinata HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 50.8
BcaC09g49214 Brassica carinata HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 50.8
A01p32310 Brassica napus HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 50.8
C01p41330 Brassica napus HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 50.8
BolC1t04092H Brassica oleracea HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 50.8
BraA01t03357Z Brassica rapa HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 50.8
Thhalv10021068m.g Eutrema salsugineum HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 50.8
Glyma.10G243200 Glycine max HOM05D001363 ORTHO05D002212 1.0e-06 58.2 94 41.5
Sp3g20580 Schrenkiella parvula HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 50.8
TWI53G1709 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.0e-06 58.2 61 52.5
CARHR050050 Cardamine hirsuta HOM05D001363 ORTHO05D002212 1.3e-06 57.8 61 50.8
CARHR098810 Cardamine hirsuta HOM05D001363 ORTHO05D002212 1.3e-06 57.8 61 50.8
CARHR265640 Cardamine hirsuta HOM05D001363 ORTHO05D002212 1.3e-06 57.8 61 50.8
Ciclev10006682m.g Citrus clementina HOM05D001363 ORTHO05D002212 1.3e-06 57.8 61 52.5
FAN17G1768 Fragaria x ananassa HOM05D002547 ORTHO05D002649 1.3e-06 57.8 61 50.8
Gohir.D09G221800 Gossypium hirsutum HOM05D001363 ORTHO05D002212 1.3e-06 57.8 61 52.5
Lj5g0010655 Lotus japonicus HOM05D001363 ORTHO05D002212 1.3e-06 57.8 94 40.4
Medtr5g042180 Medicago truncatula HOM05D002036 ORTHO05D001913 1.3e-06 57.8 62 53.2
Sc13g0004780 Simmondsia chinensis HOM05D001363 ORTHO05D002212 1.3e-06 57.8 61 50.8
THA.LOC104803046 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 1.3e-06 57.8 61 50.8
THA.LOC104804919 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 1.3e-06 57.8 61 50.8
THA.LOC104808576 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 1.3e-06 57.8 61 50.8
Atru.chr4.2332 Acer truncatum HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 50.8
arahy.Tifrunner.gnm1.ann1.MX9883 Arachis hypogaea HOM05D001363 ORTHO05D002212 1.7e-06 57.4 94 40.4
Carub.0003s2301 Capsella rubella HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 50.8
Gorai.006G243000 Gossypium raimondii HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 52.5
MD16G1200300 Malus domestica HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 49.2
Manes.03G172700 Manihot esculenta HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 49.2
PSO210G1487 Papaver somniferum HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 49.2
PSO461G0042 Papaver somniferum HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 49.2
PGR142G0038 Punica granatum HOM05D001363 ORTHO05D002212 1.7e-06 57.4 61 54.1
AL3G37220 Arabidopsis lyrata HOM05D001363 ORTHO05D002212 2.2e-06 57.0 61 49.2
Nitab4.5_0007166g0010 Nicotiana tabacum HOM05D001363 ORTHO05D002212 2.2e-06 57.0 61 50.8
Prupe.1G022500 Prunus persica HOM05D001363 ORTHO05D002212 2.2e-06 57.0 61 49.2
Atru.chr4.2334 Acer truncatum HOM05D001363 ORTHO05D002212 2.9e-06 56.6 61 50.8
Aqoxy2G03469 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 2.9e-06 56.6 61 52.5
FvH4_4g03620 Fragaria vesca HOM05D001363 ORTHO05D002212 2.9e-06 56.6 61 50.8
FAN12G0492 Fragaria x ananassa HOM05D001363 ORTHO05D002212 2.9e-06 56.6 61 50.8
FAN17G1407 Fragaria x ananassa HOM05D001363 ORTHO05D002212 2.9e-06 56.6 61 50.8
FAN22G0300 Fragaria x ananassa HOM05D001363 ORTHO05D002212 2.9e-06 56.6 61 50.8
vmacro15381 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 2.9e-06 56.6 61 50.8
BcaB06g26403 Brassica carinata HOM05D001363 ORTHO05D002212 3.8e-06 56.2 61 49.2
Duzib151G0676 Durio zibethinus HOM05D001363 ORTHO05D002212 3.8e-06 56.2 61 50.8
Duzib212G0488 Durio zibethinus HOM05D001363 ORTHO05D002212 3.8e-06 56.2 61 50.8
QL06p000836 Quercus lobata HOM05D001363 ORTHO05D002212 3.8e-06 56.2 61 50.8
AT3G22880 Arabidopsis thaliana HOM05D001363 ORTHO05D002212 4.9e-06 55.8 61 49.2
COL.COLO4_21574 Corchorus olitorius HOM05D001363 ORTHO05D002212 4.9e-06 55.8 61 50.8
ECA240G4262 Erigeron canadensis HOM05D001363 ORTHO05D002212 4.9e-06 55.8 61 50.8
Lj6A646T83 Lonicera japonica HOM05D001363 ORTHO05D002212 4.9e-06 55.8 61 50.8
RcHm_v2.0_Chr4g0393481 Rosa chinensis HOM05D001363 ORTHO05D002212 4.9e-06 55.8 94 41.5
Thecc.04G239600 Theobroma cacao HOM05D001363 ORTHO05D002212 4.9e-06 55.8 61 50.8
VMungo0720G0234 Vigna mungo HOM05D001363 ORTHO05D002212 4.9e-06 55.8 94 39.4
Gohir.A02G034500 Gossypium hirsutum HOM05D001363 ORTHO05D002212 6.4e-06 55.5 61 49.2
Gorai.005G045700 Gossypium raimondii HOM05D001363 ORTHO05D002212 6.4e-06 55.5 61 49.2
Nitab4.5_0002652g0020 Nicotiana tabacum HOM05D001363 ORTHO05D002212 6.4e-06 55.5 61 49.2
Phvul.007G062500 Phaseolus vulgaris HOM05D001363 ORTHO05D002212 6.4e-06 55.5 94 39.4
Solyc09g082790.4 Solanum lycopersicum HOM05D001363 ORTHO05D002212 6.4e-06 55.5 61 49.2
Sopen09g031640 Solanum pennellii HOM05D001363 ORTHO05D002212 6.4e-06 55.5 61 49.2
PGSC0003DMG400030167 Solanum tuberosum HOM05D001363 ORTHO05D002212 6.4e-06 55.5 61 49.2
BcaB04g20490 Brassica carinata HOM05D001363 ORTHO05D002212 8.4e-06 55.1 94 41.5
CAN.G1435.9 Capsicum annuum HOM05D001363 ORTHO05D002212 8.4e-06 55.1 60 50.0
ClCG05G004820 Citrullus lanatus HOM05D001363 ORTHO05D002212 8.4e-06 55.1 61 50.8
CsaV3_3G012860 Cucumis sativus L. HOM05D001363 ORTHO05D002212 8.4e-06 55.1 61 50.8
Dinv44580 Davidia involucrata HOM05D001363 ORTHO05D002212 8.4e-06 55.1 61 49.2
HanXRQChr03g0062511 Helianthus annuus HOM05D001363 ORTHO05D002212 8.4e-06 55.1 61 49.2
Lsat_1_v5_gn_7_66001 Lactuca sativa HOM05D001363 ORTHO05D002212 8.4e-06 55.1 61 49.2
Mapoly0108s0001 Marchantia polymorpha HOM05D001363 ORTHO05D002212 8.4e-06 55.1 61 45.9
Mapoly0110s0049 Marchantia polymorpha HOM05D001363 ORTHO05D002212 8.4e-06 55.1 61 45.9
RcHm_v2.0_Chr4g0391091 Rosa chinensis HOM05D001363 ORTHO05D002212 8.4e-06 55.1 61 49.2
TWI09G0463 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 8.4e-06 55.1 61 49.2


User provided reference genes

Program Settings