Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 1.6e-156 556.2 316 100.0
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 4.5e-127 458.4 323 84.8
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 5.7e-122 441.4 322 82.3
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 1.1e-120 437.2 322 82.3
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 1.1e-117 427.2 331 78.2
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.9e-117 426.4 327 80.1
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 3.3e-117 425.6 323 81.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.1e-116 422.9 329 78.1
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 3.6e-116 422.2 329 77.2
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 6.1e-116 421.4 329 78.7
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 8.0e-116 421.0 293 84.6
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.4e-115 420.2 324 79.0
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 1.5e-114 416.8 360 73.3
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 3.4e-114 415.6 329 76.3
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 3.4e-114 415.6 307 80.1
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 4.4e-114 415.2 336 75.6
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.9e-112 409.8 331 75.8
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 2.4e-112 409.5 327 75.5
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.2e-112 409.1 307 78.5
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 2.0e-111 406.4 323 74.6
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 4.6e-111 405.2 328 75.9
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 3.0e-110 402.5 335 73.1
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 3.9e-110 402.1 326 73.6
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 5.0e-110 401.7 322 78.3
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 6.6e-110 401.4 330 73.6
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 8.6e-110 401.0 318 75.5
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.1e-109 400.6 301 78.1
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 1.1e-109 400.6 299 78.3
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.1e-109 400.6 307 77.9
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.5e-109 400.2 301 76.1
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 1.9e-109 399.8 315 76.2
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 3.3e-109 399.1 296 78.0
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 4.3e-109 398.7 325 75.1
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.3e-109 398.7 309 76.1
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 5.6e-109 398.3 330 71.8
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 5.6e-109 398.3 323 73.7
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 7.3e-109 397.9 325 74.2
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.6e-108 396.7 329 72.3
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.6e-108 396.7 304 75.7
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 2.8e-108 396.0 305 75.1
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 2.8e-108 396.0 332 72.6
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 3.6e-108 395.6 332 72.0
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 3.6e-108 395.6 307 75.9
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 4.7e-108 395.2 312 73.4
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 6.2e-108 394.8 329 74.2
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 8.0e-108 394.4 307 76.5
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.1e-107 394.0 287 78.4
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.4e-107 393.7 299 76.3
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.4e-107 393.7 301 75.7
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 1.4e-107 393.7 314 75.8
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.8e-107 393.3 325 74.2
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 6.8e-107 391.3 324 74.1
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 8.9e-107 391.0 282 80.5
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 8.9e-107 391.0 302 75.5
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.0e-106 389.8 303 74.9
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 2.0e-106 389.8 293 76.8
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 2.6e-106 389.4 304 74.7
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.4e-106 389.0 327 71.3
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 4.4e-106 388.7 274 82.1
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 5.8e-106 388.3 305 77.0
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 5.8e-106 388.3 303 74.6
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 5.8e-106 388.3 283 79.9
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 7.5e-106 387.9 303 76.9
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 7.5e-106 387.9 318 72.6
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 9.8e-106 387.5 300 76.0
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.3e-105 387.1 319 73.7
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.7e-105 386.7 331 72.2
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.9e-105 386.0 330 71.2
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 2.9e-105 386.0 304 73.4
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 6.4e-105 384.8 326 73.0
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 8.3e-105 384.4 355 67.9
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 1.1e-104 384.0 328 70.7
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 1.4e-104 383.6 324 71.0
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.4e-104 383.6 328 70.7
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.9e-104 383.3 330 70.3
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.4e-104 382.9 259 84.9
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 3.2e-104 382.5 308 75.3
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 3.2e-104 382.5 308 75.3
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 4.1e-104 382.1 325 72.9
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 5.4e-104 381.7 329 72.3
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 7.1e-104 381.3 277 77.6
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.2e-103 380.6 331 70.4
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.2e-103 380.6 327 71.3
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 1.6e-103 380.2 329 72.3
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.6e-103 380.2 329 71.4
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.1e-103 379.8 324 72.8
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.7e-103 379.4 304 74.3
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.5e-103 379.0 324 72.8
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 4.6e-103 378.6 315 72.4
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 7.8e-103 377.9 325 72.3
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 7.8e-103 377.9 325 72.3
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 7.8e-103 377.9 326 70.2
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 7.8e-103 377.9 329 70.8
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.0e-102 377.5 278 78.8
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.0e-102 377.5 333 70.0
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.0e-102 377.5 329 70.8
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-102 377.1 330 70.3
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 3.0e-102 375.9 329 68.4
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 3.9e-102 375.6 330 70.0
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 3.9e-102 375.6 307 72.6
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 6.6e-102 374.8 310 72.6
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 6.6e-102 374.8 330 70.0
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 6.6e-102 374.8 327 71.3
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.9e-101 373.2 330 68.8
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.5e-101 372.9 328 70.7
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 2.5e-101 372.9 284 76.8
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 5.6e-101 371.7 331 70.7
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 5.6e-101 371.7 325 70.5
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 7.3e-101 371.3 283 76.0
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.6e-100 370.2 323 69.7
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 3.6e-100 369.0 332 69.0
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 6.2e-100 368.2 332 68.1
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 6.2e-100 368.2 303 72.9
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 6.2e-100 368.2 303 72.9
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 6.2e-100 368.2 303 72.9
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 1.1e-99 367.5 320 70.6
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.3e-99 366.3 327 68.2
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 3.1e-99 365.9 321 70.4
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 4.0e-99 365.5 314 70.7
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 4.0e-99 365.5 317 71.0
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 4.0e-99 365.5 326 69.9
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 5.2e-99 365.2 278 76.6
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 5.2e-99 365.2 322 69.9
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 5.2e-99 365.2 322 69.9
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 5.2e-99 365.2 257 71.2
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.2e-98 364.0 327 67.9
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 4.4e-98 362.1 262 80.5
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 7.6e-98 361.3 286 73.1
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 3.7e-97 359.0 326 68.7
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 4.9e-97 358.6 297 74.1
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 1.1e-96 357.5 313 68.1
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.2e-96 355.9 307 63.8
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 7.1e-96 354.8 302 72.2
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 4.6e-95 352.1 275 75.6
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.9e-93 346.7 264 77.7
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 3.3e-93 345.9 277 73.3
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 5.6e-93 345.1 268 72.4
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.6e-92 343.6 260 75.0
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.6e-92 343.6 273 71.1
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.1e-91 340.9 258 85.3
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 5.2e-91 338.6 336 67.6
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 6.8e-91 338.2 305 69.8
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.1e-88 330.9 227 85.9
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 9.3e-88 327.8 231 81.8
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.2e-87 327.4 231 82.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.6e-87 325.5 301 59.5
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 4.3e-85 318.9 274 73.7
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 1.3e-84 317.4 196 95.9
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 5.3e-83 312.0 251 70.9
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.8e-81 305.8 327 62.1
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.8e-81 305.8 327 62.1
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 7.1e-80 301.6 325 56.3
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 5.6e-77 292.0 362 58.0
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.6e-77 292.0 296 58.1
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 9.6e-77 291.2 252 59.9
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.1e-72 277.7 250 57.2
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.1e-71 273.5 249 61.4
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 1.6e-68 263.8 258 67.4
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.2e-66 257.7 240 73.8
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 2.1e-63 246.9 252 70.2
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 3.2e-56 223.0 149 77.9
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 4.6e-55 219.2 265 45.3
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 2.3e-54 216.9 149 71.8
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 4.3e-53 212.6 260 48.8
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.0e-49 201.4 123 77.2
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 4.3e-45 186.0 123 70.7
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.2e-39 167.9 166 72.9
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 2.7e-39 166.8 166 72.3
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 8.8e-38 161.8 126 73.0
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.3e-33 147.9 262 40.8
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.2e-31 141.4 130 63.8
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 1.8e-30 137.5 128 59.4
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 4.4e-29 132.9 86 73.3
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 9.1e-27 125.2 108 69.4
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 6.1e-23 112.5 78 70.5
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.3e-17 94.7 146 53.4
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 9.4e-16 88.6 147 52.4
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 2.1e-15 87.4 106 64.2
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 3.6e-15 86.7 83 78.3
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 2.8e-12 77.0 122 42.6
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 6.3e-12 75.9 93 44.1
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 2.8e-07 60.5 81 37.0


User provided reference genes

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