Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 2.5e-234 815.1 407 100.0
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 1.0e-187 660.2 359 93.9
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 2.5e-154 549.3 361 80.3
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 1.8e-128 463.4 380 66.3
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 4.0e-128 462.2 365 67.9
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 2.1e-124 449.9 348 68.4
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 5.5e-117 425.2 343 65.9
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 1.4e-115 420.6 343 64.1
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 3.0e-115 419.5 351 64.7
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 1.5e-114 417.2 345 66.4
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 2.5e-114 416.4 352 64.5
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 3.1e-112 409.5 342 65.2
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 9.4e-109 397.9 345 61.2
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 4.7e-108 395.6 345 60.9
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 9.1e-104 381.3 359 59.3
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.5e-85 320.9 424 46.5
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 1.4e-83 314.3 361 50.1
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 1.8e-83 313.9 415 46.3
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 3.0e-83 313.2 375 49.1
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 8.8e-83 311.6 357 49.3
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.0e-82 310.5 382 48.7
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 1.4e-80 304.3 342 48.8
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 5.4e-80 302.4 457 42.9
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 6.6e-78 295.4 367 45.8
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 2.5e-77 293.5 389 43.7
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.2e-76 291.2 402 42.8
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.6e-76 290.8 402 42.0
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 3.6e-76 289.7 382 44.0
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 3.0e-75 286.6 384 45.1
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 6.8e-75 285.4 375 45.1
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 8.9e-75 285.0 378 45.0
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.6e-74 283.5 402 42.3
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 9.8e-74 281.6 384 44.5
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 1.7e-73 280.8 400 42.0
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 3.7e-73 279.6 396 42.4
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 8.3e-73 278.5 390 39.5
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.1e-72 278.1 415 42.4
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 1.1e-72 278.1 390 39.5
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 4.5e-71 272.7 414 43.7
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 4.5e-71 272.7 345 44.1
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 5.9e-71 272.3 427 40.5
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.0e-70 271.6 395 42.0
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 5.0e-70 269.2 407 40.5
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 1.1e-69 268.1 403 40.2
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 3.3e-69 266.5 378 43.1
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 7.3e-69 265.4 358 45.0
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 6.1e-68 262.3 402 41.8
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 3.1e-67 260.0 354 43.5
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 3.1e-67 260.0 453 37.7
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 4.0e-67 259.6 446 36.5
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.2e-66 258.1 421 38.2
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 2.6e-66 256.9 367 42.5
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 2.6e-66 256.9 467 38.1
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 9.8e-66 255.0 344 44.8
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 2.2e-65 253.8 346 42.2
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 2.9e-65 253.4 379 40.9
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 6.4e-65 252.3 371 42.6
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 1.1e-64 251.5 353 43.9
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 4.1e-64 249.6 371 42.3
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 4.1e-64 249.6 392 41.6
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 1.2e-63 248.1 386 42.2
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.6e-63 247.7 341 43.1
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 2.0e-63 247.3 407 40.0
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 3.5e-63 246.5 358 41.9
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 4.6e-63 246.1 393 37.9
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 1.7e-62 244.2 404 37.6
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 3.0e-62 243.4 373 41.0
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 8.6e-62 241.9 432 36.3
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 1.5e-61 241.1 449 37.4
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 7.3e-61 238.8 250 54.4
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 9.5e-61 238.4 490 33.9
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 9.5e-61 238.4 488 34.0
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.2e-60 238.0 368 38.9
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 1.2e-60 238.0 389 36.8
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.8e-60 236.9 385 37.9
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.6e-60 236.5 385 37.9
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 8.0e-60 235.3 401 38.7
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 1.1e-59 235.0 384 40.6
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.4e-59 234.6 335 43.9
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 1.8e-59 234.2 395 38.7
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 8.9e-59 231.9 388 35.3
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.2e-58 231.5 494 32.8
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 1.5e-58 231.1 216 56.0
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 7.5e-58 228.8 366 38.5
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 7.5e-58 228.8 357 39.2
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 9.8e-58 228.4 509 32.2
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 2.9e-57 226.9 419 36.8
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 2.9e-57 226.9 315 43.2
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 3.7e-57 226.5 313 42.5
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 3.7e-57 226.5 359 38.4
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 4.9e-57 226.1 384 38.0
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 1.9e-56 224.2 398 36.9
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 9.2e-56 221.9 215 53.5
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.0e-54 218.4 386 36.5
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 8.6e-54 215.3 302 42.4
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 3.3e-53 213.4 226 51.8
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.1e-52 210.7 173 63.6
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 2.1e-52 210.7 173 59.5
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 3.6e-52 209.9 258 48.1
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 3.1e-51 206.8 376 35.9
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.5e-50 204.5 280 45.4
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.5e-50 204.5 365 37.0
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 9.9e-50 201.8 327 37.9
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 2.2e-49 200.7 236 47.0
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 4.9e-49 199.5 282 41.1
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 5.4e-48 196.1 414 33.6
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 9.2e-48 195.3 215 49.3
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 4.6e-47 193.0 215 48.8
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 7.8e-47 192.2 146 61.6
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.7e-46 191.0 396 33.8
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 2.3e-46 190.7 373 35.7
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.0e-46 190.3 146 61.6
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 4.0e-43 179.9 161 56.5
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 9.9e-42 175.3 502 28.7
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 1.7e-41 174.5 172 50.6
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.4e-40 170.6 335 35.8
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 4.2e-40 169.9 334 34.4
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 9.9e-34 148.7 185 44.9
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 1.7e-33 147.9 242 41.3
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 5.4e-32 142.9 171 46.8
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 1.5e-29 134.8 242 39.3
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 3.3e-29 133.7 105 58.1
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.1e-27 128.6 110 54.5
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 3.8e-25 120.2 89 61.8
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 1.4e-24 118.2 153 42.5
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.4e-24 118.2 186 39.2
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 4.2e-24 116.7 327 29.1
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 2.7e-23 114.0 151 43.0
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 1.0e-22 112.1 141 43.3
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 1.8e-22 111.3 253 35.6
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 5.1e-22 109.8 221 36.7
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 5.1e-22 109.8 410 26.6
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 1.6e-20 104.8 238 31.9
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 9.3e-16 89.0 221 33.0
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 7.9e-15 85.9 63 58.7
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 4.3e-13 80.1 66 57.6
GSVIVG01004440001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.7e-12 77.0 87 41.4
GSVIVG01004113001 Vitis vinifera HOM05D004664 ORTHO05D005526 4.8e-12 76.6 81 43.2
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 2.4e-11 74.3 80 48.8
Nn1g08309 Nelumbo nucifera HOM05D004664 ORTHO05D005526 6.9e-11 72.8 79 48.1
Medtr0333s0010 Medicago truncatula HOM05D009865 ORTHO05D005526 9.0e-11 72.4 45 77.8
Medtr7g009685 Medicago truncatula HOM05D009865 ORTHO05D005526 1.7e-09 68.2 37 89.2
Medtr8g073980 Medicago truncatula HOM05D009865 ORTHO05D013614 1.7e-09 68.2 36 91.7
TPR.G28185 Trifolium pratense HOM05D000121 ORTHO05D000102 1.7e-09 68.2 106 47.2
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 2.9e-09 67.4 95 35.8
ECA237G0001 Erigeron canadensis HOM05D004664 ORTHO05D005526 5.0e-09 66.6 91 38.5
Medtr7g106310 Medicago truncatula HOM05D009865 ORTHO05D013614 5.0e-09 66.6 38 81.6
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 9.3e-08 62.4 176 31.2
Medtr4g036630 Medicago truncatula HOM05D009865 ORTHO05D013614 2.1e-07 61.2 38 76.3
SHI14289 Sapria himalayana HOM05D004664 ORTHO05D005526 4.6e-07 60.1 109 38.5
Medtr5g080320 Medicago truncatula HOM05D009865 ORTHO05D013614 7.9e-07 59.3 32 84.4
Medtr1g071670 Medicago truncatula HOM05D009865 ORTHO05D013614 3.9e-06 57.0 38 73.7


User provided reference genes

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