Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr3g024060 Medicago truncatula HOM05D002483 ORTHO05D015710 3.2e-107 391.7 192 100.0
Medtr6g044465 Medicago truncatula HOM05D002483 ORTHO05D015710 1.2e-32 144.1 74 91.9
Medtr8g470140 Medicago truncatula HOM05D002483 ORTHO05D015710 2.6e-32 142.9 68 98.5
Medtr2g074950 Medicago truncatula HOM05D002483 ORTHO05D015710 3.3e-32 142.5 67 100.0
Medtr0576s0010 Medicago truncatula HOM05D002483 ORTHO05D015710 1.2e-29 134.0 74 86.5
Medtr6g046370 Medicago truncatula HOM05D002483 ORTHO05D015710 6.5e-28 128.3 62 96.8
Medtr3g008780 Medicago truncatula HOM05D002483 ORTHO05D015710 5.5e-27 125.2 68 89.7
Medtr5g019590 Medicago truncatula HOM05D002483 ORTHO05D015710 1.2e-26 124.0 62 95.2
Medtr7g056277 Medicago truncatula HOM05D000051 ORTHO05D000015 1.1e-19 100.9 55 87.3
Medtr5g014910 Medicago truncatula HOM05D029643 ORTHO05D015710 1.5e-16 90.5 76 61.8
Medtr8g067610 Medicago truncatula HOM05D000230 ORTHO05D015710 3.7e-15 85.9 41 97.6
MELO3C025796.2 Cucumis melo HOM05D002483 ORTHO05D003728 1.6e-10 70.5 52 63.5
CsaV3_3G031230 Cucumis sativus L. HOM05D002483 ORTHO05D003728 1.6e-10 70.5 52 63.5
ClCG07G014160 Citrullus lanatus HOM05D002483 ORTHO05D003728 2.8e-10 69.7 52 61.5
Sed0014430 Sechium edule HOM05D002483 ORTHO05D003728 3.6e-10 69.3 52 61.5
Medtr8g107350 Medicago truncatula HOM05D029643 ORTHO05D020514 6.1e-10 68.6 36 91.7
arahy.Tifrunner.gnm1.ann1.CAI2GC Arachis hypogaea HOM05D002483 ORTHO05D003728 1.8e-09 67.0 52 65.4
arahy.Tifrunner.gnm1.ann1.Z3FQSU Arachis hypogaea HOM05D002483 ORTHO05D003728 1.8e-09 67.0 52 65.4
Glyma.07G004100 Glycine max HOM05D002483 ORTHO05D003728 1.8e-09 67.0 52 65.4
Psat7g261280 Pisum sativum HOM05D002483 ORTHO05D003728 1.8e-09 67.0 52 65.4
VMungo0647G1624 Vigna mungo HOM05D002483 ORTHO05D003728 1.8e-09 67.0 52 65.4
Cfa002130 Carpinus fangiana HOM05D002483 ORTHO05D003728 2.3e-09 66.6 52 65.4
GSVIVG01016151001 Vitis vinifera HOM05D002483 ORTHO05D003728 2.3e-09 66.6 52 65.4
Actinidia21641 Actinidia chinensis HOM05D002483 ORTHO05D019471 3.1e-09 66.2 58 58.6
MBI16_g09349_MAGBIO Magnolia biondii HOM05D002483 ORTHO05D003728 3.1e-09 66.2 52 63.5
Lj3g0008227 Lotus japonicus HOM05D002483 ORTHO05D003728 4.0e-09 65.9 52 63.5
Medtr4g008250 Medicago truncatula HOM05D002483 ORTHO05D003728 4.0e-09 65.9 52 63.5
Phvul.008G255400 Phaseolus vulgaris HOM05D002483 ORTHO05D003728 4.0e-09 65.9 52 63.5
TPR.G15712 Trifolium pratense HOM05D002483 ORTHO05D003728 4.0e-09 65.9 52 63.5
HPP92_021939 Vanilla planifolia HOM05D002483 ORTHO05D012017 4.0e-09 65.9 52 65.4
HPP92_021966 Vanilla planifolia HOM05D002483 ORTHO05D003728 4.0e-09 65.9 52 65.4
Sed0012302 Sechium edule HOM05D002483 ORTHO05D003728 6.8e-09 65.1 52 59.6
PSO063G1484 Papaver somniferum HOM05D002483 ORTHO05D003728 8.9e-09 64.7 52 63.5
PSO170G2949 Papaver somniferum HOM05D002483 ORTHO05D003728 8.9e-09 64.7 52 63.5
Atru.chr7.2652 Acer truncatum HOM05D002483 ORTHO05D003728 1.2e-08 64.3 55 52.7
Actinidia06426 Actinidia chinensis HOM05D002483 ORTHO05D003728 1.2e-08 64.3 52 59.6
Actinidia21871 Actinidia chinensis HOM05D002483 ORTHO05D003728 1.2e-08 64.3 52 63.5
Haze_16309 Corylus avellana HOM05D002483 ORTHO05D003728 1.2e-08 64.3 52 63.5
Eucgr.F04015 Eucalyptus grandis HOM05D002483 ORTHO05D003728 1.2e-08 64.3 52 61.5
Lalb_Chr25g0278631 Lupinus albus HOM05D002483 ORTHO05D003728 1.2e-08 64.3 55 56.4
MBI14_g10731_MAGBIO Magnolia biondii HOM05D002483 ORTHO05D003728 1.2e-08 64.3 52 59.6
Nn8g40641 Nelumbo nucifera HOM05D002483 ORTHO05D003728 1.2e-08 64.3 52 61.5
Glyma.08G222400 Glycine max HOM05D002483 ORTHO05D003728 1.5e-08 63.9 52 63.5
Dinv12239 Davidia involucrata HOM05D002483 ORTHO05D003728 2.0e-08 63.5 52 59.6
Lj7A748T60 Lonicera japonica HOM05D002483 ORTHO05D003728 2.0e-08 63.5 55 54.5
CSS0015666 Camellia sinensis var. sinensis HOM05D002483 ORTHO05D003728 2.6e-08 63.2 52 57.7
COL.COLO4_19025 Corchorus olitorius HOM05D002483 ORTHO05D003728 2.6e-08 63.2 52 57.7
Gohir.A06G105400 Gossypium hirsutum HOM05D002483 ORTHO05D003728 2.6e-08 63.2 52 57.7
Gohir.D13G186400 Gossypium hirsutum HOM05D002483 ORTHO05D003728 2.6e-08 63.2 52 57.7
Gorai.010G245600 Gossypium raimondii HOM05D002483 ORTHO05D003728 2.6e-08 63.2 52 57.7
Manes.03G004100 Manihot esculenta HOM05D002483 ORTHO05D003728 2.6e-08 63.2 52 57.7
QL06p028396 Quercus lobata HOM05D002483 ORTHO05D003728 2.6e-08 63.2 73 47.9
Thecc.09G008000 Theobroma cacao HOM05D002483 ORTHO05D003728 2.6e-08 63.2 52 57.7
GSVIVG01035511001 Vitis vinifera HOM05D002483 ORTHO05D003728 2.6e-08 63.2 52 61.5
CiPaw.02G061900 Carya illinoinensis HOM05D002483 ORTHO05D003728 3.4e-08 62.8 52 59.6
Ca_20943_v3 Cicer arietinum L. HOM05D002483 ORTHO05D003728 3.4e-08 62.8 52 61.5
Duzib168G1430 Durio zibethinus HOM05D002483 ORTHO05D003728 3.4e-08 62.8 52 55.8
QL05p083025 Quercus lobata HOM05D002483 ORTHO05D003728 3.4e-08 62.8 52 57.7
vmacro18759 Vaccinium macrocarpon HOM05D002483 ORTHO05D003728 3.4e-08 62.8 52 59.6
ATR0605G160 Amborella trichopoda HOM05D002483 ORTHO05D003728 4.4e-08 62.4 52 59.6
CANSAT01G0591 Cannabis sativa HOM05D002483 ORTHO05D003728 4.4e-08 62.4 52 57.7
Nn1g02788 Nelumbo nucifera HOM05D002483 ORTHO05D003728 4.4e-08 62.4 52 61.5
PSO801G0437 Papaver somniferum HOM05D002483 ORTHO05D003728 4.4e-08 62.4 52 61.5
Cc06_g06520 Coffea canephora HOM05D002483 ORTHO05D003728 5.8e-08 62.0 52 57.7
DCAR_010118 Daucus carota HOM05D002483 ORTHO05D003728 5.8e-08 62.0 52 57.7
Lalb_Chr04g0264691 Lupinus albus HOM05D002483 ORTHO05D003728 5.8e-08 62.0 52 59.6
TAR383G1093 Trochodendron aralioides HOM05D002483 ORTHO05D003728 5.8e-08 62.0 52 59.6
vmacro05124 Vaccinium macrocarpon HOM05D002483 ORTHO05D003728 5.8e-08 62.0 52 59.6
Cfa008673 Carpinus fangiana HOM05D002483 ORTHO05D003728 7.5e-08 61.6 52 57.7
Gohir.D06G107500 Gossypium hirsutum HOM05D002483 ORTHO05D003728 7.5e-08 61.6 52 55.8
Gorai.010G122200 Gossypium raimondii HOM05D002483 ORTHO05D003728 7.5e-08 61.6 52 55.8
Os01g0281400 Oryza sativa ssp. japonica HOM05D002483 ORTHO05D003728 7.5e-08 61.6 52 57.7
Os11g0174000 Oryza sativa ssp. japonica HOM05D002483 ORTHO05D003728 7.5e-08 61.6 52 57.7
PGR102G1533 Punica granatum HOM05D002483 ORTHO05D003728 9.8e-08 61.2 52 57.7
Sc15g0000950 Simmondsia chinensis HOM05D002483 ORTHO05D003728 9.8e-08 61.2 52 59.6
Zm00001eb129320 Zea mays HOM05D002483 ORTHO05D003728 9.8e-08 61.2 52 57.7
CSS0031588 Camellia sinensis var. sinensis HOM05D002483 ORTHO05D003728 1.3e-07 60.8 52 57.7
CANSAT78G0511 Cannabis sativa HOM05D002483 ORTHO05D003728 1.3e-07 60.8 52 57.7
Gohir.A13G178300 Gossypium hirsutum HOM05D002483 ORTHO05D003728 1.3e-07 60.8 52 55.8
Lj9A541T95 Lonicera japonica HOM05D002483 ORTHO05D003728 1.3e-07 60.8 52 55.8
Lalb_Chr01g0011801 Lupinus albus HOM05D002483 ORTHO05D003728 1.3e-07 60.8 52 57.7
TWI79G1746 Tripterygium wilfordii HOM05D002483 ORTHO05D003728 1.3e-07 60.8 52 55.8
Aqoxy7G02902 Aquilegia oxysepala HOM05D002483 ORTHO05D003728 1.7e-07 60.5 52 57.7
Cpa.g.sc23.22 Carica papaya HOM05D002483 ORTHO05D019471 1.7e-07 60.5 55 49.1
Haze_11693 Corylus avellana HOM05D002483 ORTHO05D003728 1.7e-07 60.5 52 55.8
Duzib187G0469 Durio zibethinus HOM05D002483 ORTHO05D003728 1.7e-07 60.5 52 55.8
PSO339G4471 Papaver somniferum HOM05D002483 ORTHO05D003728 1.7e-07 60.5 52 61.5
Peaxi162Scf00211g00089 Petunia axillaris HOM05D002483 ORTHO05D003728 1.7e-07 60.5 52 53.8
Rhsim08G0248400 Rhododendron simsii HOM05D002483 ORTHO05D003728 1.7e-07 60.5 52 57.7
SalBow6G0622 Salvia bowleyana HOM05D002483 ORTHO05D003728 1.7e-07 60.5 52 53.8
TWI31G0448 Tripterygium wilfordii HOM05D002483 ORTHO05D003728 1.7e-07 60.5 52 53.8
Zm00001eb332530 Zea mays HOM05D002483 ORTHO05D003728 1.7e-07 60.5 52 57.7
CAN.G1245.6 Capsicum annuum HOM05D002483 ORTHO05D003728 2.2e-07 60.1 52 55.8
Ciclev10007364m.g Citrus clementina HOM05D002483 ORTHO05D003728 2.2e-07 60.1 52 55.8
MD13G1280100 Malus domestica HOM05D002483 ORTHO05D003728 2.2e-07 60.1 52 55.8
Manes.16G135200 Manihot esculenta HOM05D002483 ORTHO05D003728 2.2e-07 60.1 52 53.8
RcHm_v2.0_Chr4g0411591 Rosa chinensis HOM05D002483 ORTHO05D003728 2.2e-07 60.1 52 57.7
Solyc10g081920.2 Solanum lycopersicum HOM05D002483 ORTHO05D003728 2.2e-07 60.1 52 55.8
Sopen10g032430 Solanum pennellii HOM05D002483 ORTHO05D003728 2.2e-07 60.1 52 55.8
PGSC0003DMG400028234 Solanum tuberosum HOM05D002483 ORTHO05D003728 2.2e-07 60.1 52 55.8
Cpa.g.c32953.1 Carica papaya HOM05D002483 ORTHO05D003728 2.9e-07 59.7 52 53.8
Dinv20355 Davidia involucrata HOM05D002483 ORTHO05D003728 2.9e-07 59.7 55 56.4
Duzib150G0346 Durio zibethinus HOM05D002483 ORTHO05D003728 2.9e-07 59.7 52 53.8
Migut.F02132 Erythranthe guttata HOM05D002483 ORTHO05D003728 2.9e-07 59.7 52 55.8
MD04G1023700 Malus domestica HOM05D002483 ORTHO05D003728 2.9e-07 59.7 52 55.8
Oeu046891.1 Olea europaea HOM05D002483 ORTHO05D003728 2.9e-07 59.7 52 55.8
SGA_v2.0_scaffold62G21499 Striga asiatica HOM05D002483 ORTHO05D004557 2.9e-07 59.7 52 55.8
TAR626G1906 Trochodendron aralioides HOM05D002483 ORTHO05D003728 2.9e-07 59.7 52 57.7
MSTRG.8208 Avicennia marina HOM05D002483 ORTHO05D003728 4.9e-07 58.9 52 55.8
DCAR_001480 Daucus carota HOM05D002483 ORTHO05D003728 4.9e-07 58.9 52 55.8
CiPaw.01G111600 Carya illinoinensis HOM05D002483 ORTHO05D003728 6.4e-07 58.5 52 55.8
Gohir.A05G063700 Gossypium hirsutum HOM05D002483 ORTHO05D003728 6.4e-07 58.5 52 53.8
Gohir.D05G066300 Gossypium hirsutum HOM05D002483 ORTHO05D003728 6.4e-07 58.5 52 53.8
Gorai.009G067100 Gossypium raimondii HOM05D002483 ORTHO05D003728 6.4e-07 58.5 52 53.8
Hma1.2p1_2167F.1_g315890 Hydrangea macrophylla HOM05D002483 ORTHO05D003728 6.4e-07 58.5 52 57.7
Lsat_1_v5_gn_3_66800 Lactuca sativa HOM05D002483 ORTHO05D003728 6.4e-07 58.5 52 51.9
Potri.006G273300 Populus trichocarpa HOM05D002483 ORTHO05D003728 6.4e-07 58.5 52 51.9
Potri.018G007400 Populus trichocarpa HOM05D002483 ORTHO05D003728 6.4e-07 58.5 52 51.9
Hund05099 Selenicereus undatus HOM05D002483 ORTHO05D003728 6.4e-07 58.5 52 55.8
MSTRG.330 Avicennia marina HOM05D002483 ORTHO05D003728 8.3e-07 58.2 52 55.8
Sabra18G0014900 Salix brachista HOM05D002483 ORTHO05D003728 8.3e-07 58.2 52 51.9
Nn3g19670 Nelumbo nucifera HOM05D002483 ORTHO05D003728 1.1e-06 57.8 52 55.8
Nitab4.5_0001287g0030 Nicotiana tabacum HOM05D002483 ORTHO05D003728 1.1e-06 57.8 52 53.8
Sopen01g003130 Solanum pennellii HOM05D002483 ORTHO05D003728 1.1e-06 57.8 52 53.8
PGSC0003DMG401021320 Solanum tuberosum HOM05D002483 ORTHO05D003728 1.1e-06 57.8 52 53.8
PGSC0003DMG402021320 Solanum tuberosum HOM05D002483 ORTHO05D003728 1.1e-06 57.8 52 53.8
Oeu010161.1 Olea europaea HOM05D002483 ORTHO05D003728 1.4e-06 57.4 55 50.9
HanXRQChr04g0094101 Helianthus annuus HOM05D002483 ORTHO05D003728 1.9e-06 57.0 52 50.0
Sc10g0008030 Simmondsia chinensis HOM05D002483 ORTHO05D003728 1.9e-06 57.0 52 57.7
Zm00001eb091670 Zea mays HOM05D002483 ORTHO05D003728 1.9e-06 57.0 52 51.9
CDE06G1417 Ceratophyllum demersum HOM05D002483 ORTHO05D003728 2.4e-06 56.6 52 53.8
Peaxi162Scf00586g00015 Petunia axillaris HOM05D002483 ORTHO05D003728 2.4e-06 56.6 52 53.8
Sabra06G0211700 Salix brachista HOM05D002483 ORTHO05D003728 2.4e-06 56.6 52 50.0
CAN.G574.20 Capsicum annuum HOM05D002483 ORTHO05D003728 4.1e-06 55.8 52 51.9
ECA246G1695 Erigeron canadensis HOM05D002483 ORTHO05D003728 4.1e-06 55.8 52 50.0
Nitab4.5_0004070g0090 Nicotiana tabacum HOM05D002483 ORTHO05D003728 4.1e-06 55.8 52 51.9
Hund18599 Selenicereus undatus HOM05D002483 ORTHO05D003728 4.1e-06 55.8 52 53.8
SGA_v2.0_scaffold122G33182 Striga asiatica HOM05D002483 ORTHO05D003728 4.1e-06 55.8 52 51.9
Ciclev10010393m.g Citrus clementina HOM05D002483 ORTHO05D003728 5.4e-06 55.5 52 50.0
Nitab4.5_0000020g0050 Nicotiana tabacum HOM05D002483 ORTHO05D003728 9.2e-06 54.7 52 51.9
Nitab4.5_0004452g0010 Nicotiana tabacum HOM05D002483 ORTHO05D003728 9.2e-06 54.7 52 51.9
Solyc01g007150.3 Solanum lycopersicum HOM05D002483 ORTHO05D003728 9.2e-06 54.7 52 51.9


User provided reference genes

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