Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g063930 Medicago truncatula HOM05D000882 ORTHO05D001142 1.5e-124 449.5 221 100.0
Medtr6g092010 Medicago truncatula HOM05D000882 ORTHO05D001142 2.5e-23 113.2 178 42.7
Medtr2g063913 Medicago truncatula HOM05D000882 ORTHO05D001142 6.2e-22 108.6 178 40.4
Medtr2g048610 Medicago truncatula HOM05D000882 ORTHO05D001142 8.1e-22 108.2 64 82.8
Medtr2g063837 Medicago truncatula HOM05D000882 ORTHO05D001142 4.0e-21 105.9 176 43.2
Medtr2g063873 Medicago truncatula HOM05D000882 ORTHO05D001142 4.0e-21 105.9 178 41.0
arahy.Tifrunner.gnm1.ann1.40JS6F Arachis hypogaea HOM05D000882 ORTHO05D001142 3.3e-15 86.3 177 38.4
arahy.Tifrunner.gnm1.ann1.WR01F1 Arachis hypogaea HOM05D000882 ORTHO05D001142 3.3e-15 86.3 198 34.8
Lj4g0027533 Lotus japonicus HOM05D000882 ORTHO05D001142 2.1e-14 83.6 169 37.3
Medtr4g121140 Medicago truncatula HOM05D000882 ORTHO05D001142 2.8e-14 83.2 175 37.7
arahy.Tifrunner.gnm1.ann1.GHMM2H Arachis hypogaea HOM05D000882 ORTHO05D001142 6.2e-14 82.0 218 34.4
Lalb_Chr08g0234101 Lupinus albus HOM05D000882 ORTHO05D001142 1.1e-13 81.3 198 35.9
Lalb_Chr13g0300911 Lupinus albus HOM05D000882 ORTHO05D001142 1.8e-13 80.5 131 39.7
Psat4g009280 Pisum sativum HOM05D000882 ORTHO05D001142 5.2e-13 79.0 181 34.8
Ca_21118_v3 Cicer arietinum L. HOM05D000882 ORTHO05D001142 8.9e-13 78.2 175 36.6
Phvul.005G040600 Phaseolus vulgaris HOM05D000882 ORTHO05D001142 1.5e-12 77.4 184 35.3
VMungo1080G1773 Vigna mungo HOM05D000882 ORTHO05D001142 1.5e-12 77.4 183 35.5
VMungo1215G1818 Vigna mungo HOM05D000882 ORTHO05D001142 5.8e-12 75.5 176 36.9
Glyma.17G074700 Glycine max HOM05D000882 ORTHO05D001142 9.9e-12 74.7 132 40.2
Glyma.02G203000 Glycine max HOM05D000882 ORTHO05D001142 2.2e-11 73.6 131 40.5
Sp6g19670 Schrenkiella parvula HOM05D000882 ORTHO05D001142 2.2e-11 73.6 72 48.6
TAR626G0487 Trochodendron aralioides HOM05D000882 ORTHO05D001142 4.9e-11 72.4 198 30.8
ClCG08G000930 Citrullus lanatus HOM05D000882 ORTHO05D001142 6.4e-11 72.0 72 48.6
arahy.Tifrunner.gnm1.ann1.LUZF66 Arachis hypogaea HOM05D000882 ORTHO05D001142 1.1e-10 71.2 63 55.6
QL02p093012 Quercus lobata HOM05D000882 ORTHO05D001142 2.4e-10 70.1 133 36.8
arahy.Tifrunner.gnm1.ann1.YWG9MJ Arachis hypogaea HOM05D000882 ORTHO05D001142 3.2e-10 69.7 69 52.2
Haze_19222 Corylus avellana HOM05D000882 ORTHO05D001142 3.2e-10 69.7 72 47.2
Lj4g0027420 Lotus japonicus HOM05D000882 ORTHO05D001142 3.2e-10 69.7 83 47.0
Lj4g0020238 Lotus japonicus HOM05D000882 ORTHO05D001142 4.1e-10 69.3 64 56.2
PGR102G0086 Punica granatum HOM05D000882 ORTHO05D001142 4.1e-10 69.3 72 47.2
Sed0007584 Sechium edule HOM05D000882 ORTHO05D001142 4.1e-10 69.3 186 30.6
arahy.Tifrunner.gnm1.ann1.SC0NT9 Arachis hypogaea HOM05D000882 ORTHO05D001142 5.4e-10 68.9 167 32.9
BcaNung07255 Brassica carinata HOM05D000882 ORTHO05D001142 5.4e-10 68.9 72 43.1
C03p14660 Brassica napus HOM05D000882 ORTHO05D001142 5.4e-10 68.9 72 43.1
BolC3t13907H Brassica oleracea HOM05D000882 ORTHO05D001142 5.4e-10 68.9 72 43.1
BraA03t10560Z Brassica rapa HOM05D000882 ORTHO05D001142 5.4e-10 68.9 72 43.1
Thhalv10013455m.g Eutrema salsugineum HOM05D000882 ORTHO05D001142 5.4e-10 68.9 72 47.2
Sed0011489 Sechium edule HOM05D000882 ORTHO05D001142 5.4e-10 68.9 72 47.2
Phvul.003G156800 Phaseolus vulgaris HOM05D000882 ORTHO05D001142 7.1e-10 68.6 64 54.7
Psat1g015800 Pisum sativum HOM05D000882 ORTHO05D001142 7.1e-10 68.6 64 53.1
QL04p076171 Quercus lobata HOM05D000882 ORTHO05D001142 7.1e-10 68.6 78 47.4
BcaB08g36159 Brassica carinata HOM05D000882 ORTHO05D001142 9.2e-10 68.2 72 43.1
BcaC04g19919 Brassica carinata HOM05D000882 ORTHO05D001142 1.6e-09 67.4 72 43.1
A10p16170 Brassica napus HOM05D000882 ORTHO05D001142 1.6e-09 67.4 72 43.1
C09p49840 Brassica napus HOM05D000882 ORTHO05D001142 1.6e-09 67.4 72 43.1
BolC9t57833H Brassica oleracea HOM05D000882 ORTHO05D001142 1.6e-09 67.4 72 43.1
BraA10t43612Z Brassica rapa HOM05D000882 ORTHO05D001142 1.6e-09 67.4 72 43.1
Duzib151G0910 Durio zibethinus HOM05D000882 ORTHO05D001142 1.6e-09 67.4 133 36.8
TPR.G3638 Trifolium pratense HOM05D000882 ORTHO05D001142 1.6e-09 67.4 84 45.2
CiPaw.16G114000 Carya illinoinensis HOM05D000882 ORTHO05D001142 2.1e-09 67.0 64 51.6
RcHm_v2.0_Chr6g0256111 Rosa chinensis HOM05D000882 ORTHO05D001142 2.1e-09 67.0 70 52.9
RcHm_v2.0_Chr6g0256201 Rosa chinensis HOM05D000882 ORTHO05D001142 2.1e-09 67.0 70 52.9
Actinidia04291 Actinidia chinensis HOM05D000882 ORTHO05D001142 2.7e-09 66.6 136 36.0
Lj1g0001299 Lotus japonicus HOM05D000882 ORTHO05D001142 2.7e-09 66.6 64 51.6
BcaB01g04470 Brassica carinata HOM05D000882 ORTHO05D001142 3.5e-09 66.2 78 39.7
A03p12450 Brassica napus HOM05D000882 ORTHO05D001142 3.5e-09 66.2 176 29.5
AT5G58003 Arabidopsis thaliana HOM05D000882 ORTHO05D001142 4.6e-09 65.9 72 47.2
Duzib150G0034 Durio zibethinus HOM05D000882 ORTHO05D001142 4.6e-09 65.9 132 34.8
Gohir.D02G012800 Gossypium hirsutum HOM05D000882 ORTHO05D001142 4.6e-09 65.9 134 35.8
RcHm_v2.0_Chr4g0392421 Rosa chinensis HOM05D000882 ORTHO05D001142 4.6e-09 65.9 70 52.9
RcHm_v2.0_Chr6g0276921 Rosa chinensis HOM05D000882 ORTHO05D001142 4.6e-09 65.9 70 52.9
Hund22135 Selenicereus undatus HOM05D000882 ORTHO05D001142 4.6e-09 65.9 191 29.8
Gohir.A02G012100 Gossypium hirsutum HOM05D000882 ORTHO05D001142 6.0e-09 65.5 134 35.1
Nn2g12339 Nelumbo nucifera HOM05D000882 ORTHO05D001142 6.0e-09 65.5 129 38.8
THA.LOC104816865 Tarenaya hassleriana HOM05D000882 ORTHO05D001142 6.0e-09 65.5 177 28.8
Gorai.005G016300 Gossypium raimondii HOM05D000882 ORTHO05D001142 7.8e-09 65.1 134 35.1
EL10Ac2g02952 Beta vulgaris HOM05D000882 ORTHO05D001142 1.0e-08 64.7 70 47.1
AUR62016253 Chenopodium quinoa HOM05D000882 ORTHO05D001142 1.0e-08 64.7 167 28.1
Sc02g0006320 Simmondsia chinensis HOM05D000882 ORTHO05D001142 1.0e-08 64.7 66 48.5
THA.LOC104816771 Tarenaya hassleriana HOM05D000882 ORTHO05D001142 1.0e-08 64.7 72 44.4
Thecc.09G188000 Theobroma cacao HOM05D000882 ORTHO05D001142 1.0e-08 64.7 64 53.1
AL8G34090 Arabidopsis lyrata HOM05D000882 ORTHO05D001142 1.3e-08 64.3 72 45.8
COL.COLO4_27950 Corchorus olitorius HOM05D000882 ORTHO05D001142 1.3e-08 64.3 62 51.6
COL.COLO4_28864 Corchorus olitorius HOM05D000882 ORTHO05D001142 1.3e-08 64.3 72 47.2
Carub.0008s1854 Capsella rubella HOM05D000882 ORTHO05D001142 1.7e-08 63.9 159 30.2
MELO3C022188.2 Cucumis melo HOM05D000882 ORTHO05D001142 1.7e-08 63.9 72 45.8
Hund22296 Selenicereus undatus HOM05D000882 ORTHO05D001142 1.7e-08 63.9 172 31.4
TPR.G39212 Trifolium pratense HOM05D000882 ORTHO05D001142 1.7e-08 63.9 60 56.7
Actinidia38334 Actinidia chinensis HOM05D000882 ORTHO05D001142 3.0e-08 63.2 179 31.8
Cfa019391 Carpinus fangiana HOM05D000882 ORTHO05D001142 3.0e-08 63.2 72 44.4
CiPaw.15G175300 Carya illinoinensis HOM05D000882 ORTHO05D001142 3.0e-08 63.2 172 31.4
CDE04G0391 Ceratophyllum demersum HOM05D000882 ORTHO05D001142 3.0e-08 63.2 75 44.0
TWI32G1214 Tripterygium wilfordii HOM05D000882 ORTHO05D001142 3.0e-08 63.2 78 46.2
TAR626G1907 Trochodendron aralioides HOM05D000882 ORTHO05D001142 3.0e-08 63.2 64 50.0
CsaV3_5G040120 Cucumis sativus L. HOM05D000882 ORTHO05D001142 3.9e-08 62.8 72 44.4
GSVIVG01020250001 Vitis vinifera HOM05D000882 ORTHO05D001142 3.9e-08 62.8 64 48.4
Aqoxy7G03438 Aquilegia oxysepala HOM05D000882 ORTHO05D001142 5.1e-08 62.4 70 44.3
CSS0041596 Camellia sinensis var. sinensis HOM05D000882 ORTHO05D001142 6.6e-08 62.0 84 40.5
RcHm_v2.0_Chr6g0267911 Rosa chinensis HOM05D000882 ORTHO05D001142 6.6e-08 62.0 67 52.2
AUR62042619 Chenopodium quinoa HOM05D000882 ORTHO05D001142 8.6e-08 61.6 129 33.3
MD09G1131300 Malus domestica HOM05D000882 ORTHO05D001142 8.6e-08 61.6 166 28.9
Dinv41388 Davidia involucrata HOM05D000882 ORTHO05D001142 1.5e-07 60.8 70 44.3
Manes.06G019000 Manihot esculenta HOM05D000882 ORTHO05D001142 1.5e-07 60.8 64 48.4
PSO782G4611 Papaver somniferum HOM05D000882 ORTHO05D001142 1.5e-07 60.8 86 34.9
Atru.chr7.97 Acer truncatum HOM05D000882 ORTHO05D001142 1.9e-07 60.5 135 35.6
CARHR271800 Cardamine hirsuta HOM05D000882 ORTHO05D001142 1.9e-07 60.5 72 44.4
FAN23G2267 Fragaria x ananassa HOM05D000882 ORTHO05D001142 1.9e-07 60.5 71 46.5
FAN26G2235 Fragaria x ananassa HOM05D000882 ORTHO05D001142 1.9e-07 60.5 71 46.5
PSO063G7635 Papaver somniferum HOM05D000882 ORTHO05D001142 1.9e-07 60.5 86 34.9
PSO421G0246 Papaver somniferum HOM05D000882 ORTHO05D001142 1.9e-07 60.5 69 40.6
FvH4_7g08260 Fragaria vesca HOM05D000882 ORTHO05D001142 2.5e-07 60.1 63 52.4
TWI63G1431 Tripterygium wilfordii HOM05D000882 ORTHO05D001142 2.5e-07 60.1 70 45.7
Aa31LG3G13800 Aethionema arabicum HOM05D000882 ORTHO05D001142 3.3e-07 59.7 72 44.4
CAN.G1424.9 Capsicum annuum HOM05D000882 ORTHO05D001142 3.3e-07 59.7 78 43.6
FvH4_1g01060 Fragaria vesca HOM05D000882 ORTHO05D001142 3.3e-07 59.7 71 46.5
FAN19G0326 Fragaria x ananassa HOM05D000882 ORTHO05D001142 3.3e-07 59.7 71 46.5
FAN28G0253 Fragaria x ananassa HOM05D000882 ORTHO05D001142 3.3e-07 59.7 71 46.5
RcHm_v2.0_Chr1g0324741 Rosa chinensis HOM05D000882 ORTHO05D001142 4.3e-07 59.3 96 42.7
RcHm_v2.0_Chr5g0070281 Rosa chinensis HOM05D000882 ORTHO05D001142 4.3e-07 59.3 68 45.6
RcHm_v2.0_Chr6g0257451 Rosa chinensis HOM05D000882 ORTHO05D001142 4.3e-07 59.3 67 50.7
CSS0011921 Camellia sinensis var. sinensis HOM05D000882 ORTHO05D001142 5.6e-07 58.9 75 44.0
FvH4_7g02340 Fragaria vesca HOM05D000882 ORTHO05D046232 5.6e-07 58.9 90 42.2
FvH4_7g07841 Fragaria vesca HOM05D000882 ORTHO05D001142 5.6e-07 58.9 63 50.8
Aa31LG3G3820 Aethionema arabicum HOM05D000882 ORTHO05D001142 7.3e-07 58.5 156 29.5
Migut.M00493 Erythranthe guttata HOM05D000882 ORTHO05D001142 7.3e-07 58.5 63 44.4
Nitab4.5_0005188g0010 Nicotiana tabacum HOM05D000882 ORTHO05D001142 7.3e-07 58.5 76 43.4
Solyc07g005450.3 Solanum lycopersicum HOM05D000882 ORTHO05D001142 7.3e-07 58.5 76 43.4
Solyc07g005460.4 Solanum lycopersicum HOM05D000882 ORTHO05D001142 7.3e-07 58.5 76 43.4
Sopen07g001340 Solanum pennellii HOM05D000882 ORTHO05D001142 7.3e-07 58.5 76 43.4
Ah.16g106020 Amaranthus hybridus HOM05D000882 ORTHO05D001142 9.6e-07 58.2 70 44.3
ECA234G2782 Erigeron canadensis HOM05D000882 ORTHO05D001142 9.6e-07 58.2 70 41.4
FAN04G1875 Fragaria x ananassa HOM05D000882 ORTHO05D001142 9.6e-07 58.2 134 34.3
MD06G1145600 Malus domestica HOM05D000882 ORTHO05D001142 9.6e-07 58.2 65 44.6
Potri.018G108300 Populus trichocarpa HOM05D000882 ORTHO05D001142 9.6e-07 58.2 64 46.9
Sopen00g012560 Solanum pennellii HOM05D000882 ORTHO05D001142 9.6e-07 58.2 67 43.3
AUR62005899 Chenopodium quinoa HOM05D000882 ORTHO05D001142 1.2e-06 57.8 168 32.1
RcHm_v2.0_Chr2g0085821 Rosa chinensis HOM05D000882 ORTHO05D001142 1.2e-06 57.8 140 33.6
RcHm_v2.0_Chr7g0234721 Rosa chinensis HOM05D000882 ORTHO05D001142 1.2e-06 57.8 71 42.3
RcHm_v2.0_Chr7g0234801 Rosa chinensis HOM05D000882 ORTHO05D001142 1.2e-06 57.8 71 42.3
MSTRG.26284 Avicennia marina HOM05D000882 ORTHO05D001142 1.6e-06 57.4 202 25.2
Migut.B00998 Erythranthe guttata HOM05D000882 ORTHO05D001142 1.6e-06 57.4 194 27.8
MBI14_g30965_MAGBIO Magnolia biondii HOM05D000882 ORTHO05D001142 1.6e-06 57.4 75 42.7
Os05g0390500 Oryza sativa ssp. japonica HOM05D000882 ORTHO05D001142 1.6e-06 57.4 65 47.7
Eucgr.C02587 Eucalyptus grandis HOM05D000882 ORTHO05D001142 2.1e-06 57.0 136 33.8
Peaxi162Scf00594g00525 Petunia axillaris HOM05D000882 ORTHO05D001142 2.1e-06 57.0 76 42.1
Atru.chr1.3488 Acer truncatum HOM05D000882 ORTHO05D001142 2.8e-06 56.6 81 39.5
DCAR_031117 Daucus carota HOM05D000882 ORTHO05D003410 2.8e-06 56.6 71 42.3
Hma1.2p1_0028F.1_g017460 Hydrangea macrophylla HOM05D000882 ORTHO05D001142 2.8e-06 56.6 63 47.6
Nitab4.5_0006527g0010 Nicotiana tabacum HOM05D000882 ORTHO05D001142 2.8e-06 56.6 76 42.1
Prupe.7G261400 Prunus persica HOM05D000882 ORTHO05D001142 2.8e-06 56.6 168 28.6
RcHm_v2.0_Chr7g0234841 Rosa chinensis HOM05D000882 ORTHO05D001142 2.8e-06 56.6 71 42.3
FvH4_7g02801 Fragaria vesca HOM05D000882 ORTHO05D001142 3.6e-06 56.2 66 47.0
MBI14_g43814_MAGBIO Magnolia biondii HOM05D000882 ORTHO05D001142 3.6e-06 56.2 158 29.7
Atru.chr1.3494 Acer truncatum HOM05D000882 ORTHO05D001142 4.7e-06 55.8 81 39.5
ATR0317G126 Amborella trichopoda HOM05D000882 ORTHO05D001142 4.7e-06 55.8 213 28.6
unitig_0.g2695 Utricularia gibba HOM05D000882 ORTHO05D001142 4.7e-06 55.8 56 51.8
arahy.Tifrunner.gnm1.ann1.IVS2PB Arachis hypogaea HOM05D000882 ORTHO05D001142 6.2e-06 55.5 63 50.8
Ciclev10010299m.g Citrus clementina HOM05D000882 ORTHO05D001142 6.2e-06 55.5 178 29.8
Dinv42867 Davidia involucrata HOM05D000882 ORTHO05D001142 6.2e-06 55.5 174 27.6
Dinv43233 Davidia involucrata HOM05D000882 ORTHO05D001142 6.2e-06 55.5 174 27.6
FvH4_2g05941 Fragaria vesca HOM05D000882 ORTHO05D001142 6.2e-06 55.5 62 53.2
FAN03G0945 Fragaria x ananassa HOM05D000882 ORTHO05D020735 6.2e-06 55.5 94 40.4
Lj6A807T94 Lonicera japonica HOM05D000882 ORTHO05D001142 6.2e-06 55.5 64 43.8
Rhsim01G0035300 Rhododendron simsii HOM05D000882 ORTHO05D001142 6.2e-06 55.5 173 27.7
RcHm_v2.0_Chr6g0254001 Rosa chinensis HOM05D000882 ORTHO05D001142 6.2e-06 55.5 63 50.8


User provided reference genes

Program Settings