Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 1.5e-279 965.7 541 100.0
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 2.7e-252 875.2 542 88.7
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 3.6e-241 838.2 553 84.1
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 5.2e-224 781.2 547 81.4
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 5.4e-213 744.6 547 74.2
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.4e-200 703.4 529 71.6
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 1.2e-199 700.3 544 69.3
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 2.0e-199 699.5 531 71.2
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 1.6e-196 689.9 543 70.7
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 3.5e-196 688.7 543 70.7
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 1.3e-195 686.8 551 66.2
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 1.1e-194 683.7 532 66.4
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 1.9e-194 682.9 553 65.8
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 5.6e-194 681.4 541 66.2
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 7.4e-194 681.0 530 71.7
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 7.4e-194 681.0 553 65.6
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 2.8e-193 679.1 530 69.2
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 4.8e-193 678.3 546 65.9
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 4.8e-193 678.3 546 68.5
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 8.1e-193 677.6 553 65.5
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.1e-192 677.2 529 68.2
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 1.8e-192 676.4 527 69.8
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 4.0e-192 675.2 541 70.2
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 5.8e-191 671.4 533 65.9
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.3e-190 670.2 511 67.9
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 1.7e-190 669.8 539 65.9
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 4.9e-190 668.3 511 68.1
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 1.1e-189 667.2 501 70.9
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 1.9e-189 666.4 531 66.1
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.2e-188 663.7 547 64.4
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 3.5e-188 662.1 511 66.1
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 3.9e-187 658.7 529 68.4
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 6.7e-187 657.9 514 69.5
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 1.1e-186 657.1 498 71.3
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 5.7e-186 654.8 571 62.0
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.3e-185 653.7 537 65.4
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 8.2e-185 651.0 510 68.4
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 2.4e-184 649.4 546 63.2
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 3.1e-184 649.0 520 64.4
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 9.0e-184 647.5 536 66.2
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 1.2e-183 647.1 540 62.4
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 1.5e-183 646.7 479 68.3
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 2.0e-183 646.4 520 64.0
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 2.6e-183 646.0 510 69.2
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 2.6e-183 646.0 502 67.7
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 7.6e-183 644.4 461 74.6
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 2.2e-182 642.9 544 61.9
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 1.1e-181 640.6 502 67.3
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 1.4e-181 640.2 526 66.3
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.9e-181 639.8 481 69.9
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 1.9e-181 639.8 502 67.3
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 1.9e-181 639.8 502 67.3
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.5e-181 639.4 499 67.9
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 9.3e-181 637.5 494 67.2
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 1.2e-180 637.1 505 67.5
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 3.6e-180 635.6 504 67.3
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 7.9e-180 634.4 505 66.3
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 1.3e-179 633.6 540 61.5
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.8e-179 633.3 521 63.0
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 8.7e-179 630.9 495 65.1
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 8.7e-179 630.9 495 65.1
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 1.9e-178 629.8 518 62.2
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 1.9e-178 629.8 510 63.5
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 5.7e-178 628.2 497 64.8
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 7.4e-178 627.9 497 64.8
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 1.6e-177 626.7 462 69.9
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 2.2e-177 626.3 538 63.9
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 4.8e-177 625.2 499 64.7
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 1.8e-176 623.2 499 64.3
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 4.1e-176 622.1 499 65.1
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 5.3e-176 621.7 532 64.1
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 5.9e-175 618.2 575 60.0
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 6.5e-174 614.8 513 66.7
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 6.5e-174 614.8 502 63.7
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 1.9e-173 613.2 521 62.0
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 2.5e-173 612.8 495 65.5
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 2.7e-172 609.4 532 60.7
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 1.0e-171 607.4 533 63.6
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 3.9e-171 605.5 522 66.1
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 2.0e-170 603.2 542 60.7
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 2.6e-170 602.8 501 63.5
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 6.3e-169 598.2 520 61.0
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 5.3e-168 595.1 506 68.4
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 2.0e-167 593.2 502 62.5
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 5.5e-165 585.1 495 64.0
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 1.3e-161 573.9 540 58.7
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 3.7e-161 572.4 528 59.5
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 2.5e-157 559.7 398 71.1
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 1.0e-155 554.3 515 60.8
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 3.3e-154 549.3 422 66.4
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 4.4e-154 548.9 449 64.4
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 1.2e-148 530.8 448 62.1
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 1.3e-142 510.8 520 54.2
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 7.0e-136 488.4 509 55.2
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 1.6e-135 487.3 508 54.9
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 3.5e-95 353.2 320 57.5
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 5.1e-94 349.4 295 62.7
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 4.6e-87 326.2 412 43.2
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 6.0e-79 299.3 244 63.9
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 1.8e-78 297.7 436 39.2
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 9.6e-77 292.0 167 83.2
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 8.2e-76 288.9 255 59.6
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.1e-75 288.5 263 60.8
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 5.0e-65 253.1 419 34.6
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.1e-64 251.9 232 57.8
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 1.9e-64 251.1 391 38.9
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 5.7e-61 239.6 197 62.9
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 6.1e-55 219.5 125 78.4
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 2.3e-54 217.6 201 57.2
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 8.8e-54 215.7 125 80.0
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 6.9e-51 206.1 165 64.8
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 1.1e-48 198.7 175 69.7
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 2.1e-47 194.5 139 66.9
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 8.2e-44 182.6 250 41.6
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 3.1e-35 154.1 80 87.5
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 3.2e-32 144.1 145 57.9
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 9.8e-29 132.5 124 58.9
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 7.0e-27 126.3 222 37.4
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 1.1e-19 102.4 76 64.5
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 9.5e-16 89.4 98 53.1
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 2.1e-15 88.2 53 77.4
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 3.0e-14 84.3 101 56.4
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 2.6e-13 81.3 93 46.2
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 7.5e-13 79.7 129 40.3
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 9.8e-13 79.3 157 40.1
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 1.2e-10 72.4 49 67.3
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 1.0e-09 69.3 52 69.2
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.1e-08 65.9 94 43.6
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 3.6e-07 60.8 32 87.5


User provided reference genes

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