Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 5.4e-66 254.2 131 100.0
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 1.3e-48 196.4 134 77.6
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 3.0e-48 195.3 134 76.9
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 1.4e-45 186.4 133 75.9
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.1e-41 172.6 133 69.2
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 2.1e-41 172.6 133 69.2
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 2.4e-37 159.1 134 69.4
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 3.2e-34 148.7 133 63.2
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 3.5e-33 145.2 133 60.2
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 1.7e-32 142.9 133 60.9
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.1e-31 140.2 134 60.4
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 1.9e-31 139.4 133 60.2
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 2.1e-30 136.0 126 61.9
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 1.7e-27 126.3 130 56.2
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 8.4e-27 124.0 101 66.3
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 3.2e-26 122.1 122 56.6
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 5.5e-26 121.3 133 53.4
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 5.5e-26 121.3 131 53.4
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 7.1e-26 120.9 128 55.5
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 9.3e-26 120.6 102 64.7
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 9.3e-26 120.6 124 57.3
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 9.3e-26 120.6 131 53.4
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.1e-25 119.4 102 63.7
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 2.1e-25 119.4 120 55.8
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 3.5e-25 118.6 119 58.0
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 3.5e-25 118.6 131 51.9
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 3.5e-25 118.6 98 65.3
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 4.6e-25 118.2 133 52.6
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 7.9e-25 117.5 132 53.0
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 7.9e-25 117.5 133 51.9
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 1.0e-24 117.1 101 63.4
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 1.0e-24 117.1 120 56.7
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 1.3e-24 116.7 101 64.4
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 1.3e-24 116.7 122 55.7
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 1.3e-24 116.7 133 54.1
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.3e-24 116.7 102 62.7
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 1.8e-24 116.3 101 63.4
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 2.3e-24 115.9 125 53.6
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 3.0e-24 115.5 104 62.5
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 3.9e-24 115.2 128 53.9
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 5.1e-24 114.8 129 52.7
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 5.1e-24 114.8 129 52.7
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 6.7e-24 114.4 101 63.4
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 8.7e-24 114.0 133 50.4
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 1.5e-23 113.2 126 54.8
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 1.5e-23 113.2 124 51.6
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 2.5e-23 112.5 104 58.7
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 3.3e-23 112.1 126 53.2
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 3.3e-23 112.1 119 53.8
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 3.3e-23 112.1 103 59.2
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 5.6e-23 111.3 124 54.8
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 7.4e-23 110.9 101 61.4
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 7.4e-23 110.9 101 61.4
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 9.6e-23 110.5 119 52.9
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 9.6e-23 110.5 95 64.2
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 9.6e-23 110.5 98 62.2
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 1.3e-22 110.2 120 55.0
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 1.3e-22 110.2 134 49.3
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 2.1e-22 109.4 101 62.4
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 2.8e-22 109.0 118 56.8
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 3.7e-22 108.6 101 60.4
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 4.8e-22 108.2 124 52.4
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 4.8e-22 108.2 100 62.0
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 4.8e-22 108.2 119 52.1
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 4.8e-22 108.2 140 50.0
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 8.1e-22 107.5 101 60.4
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 8.1e-22 107.5 119 51.3
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 1.8e-21 106.3 98 59.2
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 2.4e-21 105.9 104 54.8
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 2.4e-21 105.9 129 48.1
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 2.4e-21 105.9 99 60.6
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 4.0e-21 105.1 95 58.9
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 4.0e-21 105.1 133 51.9
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 2.6e-20 102.4 99 60.6
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 2.6e-20 102.4 101 58.4
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 2.6e-20 102.4 128 49.2
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 3.4e-20 102.1 99 57.6
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 3.4e-20 102.1 125 48.8
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 4.5e-20 101.7 101 58.4
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 4.5e-20 101.7 98 57.1
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 4.5e-20 101.7 102 57.8
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.8e-20 101.3 82 67.1
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.8e-20 101.3 83 66.3
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.0e-19 100.5 101 58.4
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 1.0e-19 100.5 126 47.6
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.0e-19 100.5 95 61.1
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 1.0e-19 100.5 95 61.1
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.0e-19 100.5 101 57.4
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 1.3e-19 100.1 95 60.0
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 1.3e-19 100.1 99 56.6
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 1.7e-19 99.8 99 56.6
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.2e-19 99.4 130 45.4
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 3.8e-19 98.6 95 58.9
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 6.5e-19 97.8 95 58.9
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 6.5e-19 97.8 95 58.9
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 6.5e-19 97.8 95 58.9
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 8.4e-19 97.4 99 55.6
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.4e-18 96.7 90 62.2
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 1.9e-18 96.3 95 51.6
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 2.5e-18 95.9 95 54.7
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.5e-18 94.7 106 52.8
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 6.0e-17 91.3 101 55.4
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.3e-16 90.1 114 44.7
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.7e-16 87.8 122 43.4
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 2.5e-15 85.9 95 52.6
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 4.3e-15 85.1 101 52.5
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 1.6e-14 83.2 105 51.4
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 4.8e-14 81.6 105 46.7
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 3.1e-13 79.0 52 73.1
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 4.1e-13 78.6 101 46.5
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 2.6e-12 75.9 47 76.6
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 2.6e-12 75.9 85 54.1
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 3.4e-12 75.5 97 47.4
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 1.3e-11 73.6 52 71.2
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 2.2e-11 72.8 95 49.5
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 3.8e-11 72.0 52 69.2
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 5.0e-11 71.6 99 45.5
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 6.5e-11 71.2 47 74.5
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.6e-09 66.6 41 75.6
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 4.6e-09 65.1 76 52.6
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 3.0e-08 62.4 74 56.8
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 8.7e-08 60.8 132 35.6


User provided reference genes

Program Settings