Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g018410 Medicago truncatula HOM05D004178 ORTHO05D005204 1.3e-38 162.5 81 100.0
Medtr4g036760 Medicago truncatula HOM05D004178 ORTHO05D005204 3.0e-14 81.6 68 69.1
Psat7g194520 Pisum sativum HOM05D004178 ORTHO05D005204 4.3e-13 77.8 68 66.2
Psat3g047440 Pisum sativum HOM05D004178 ORTHO05D005204 3.6e-12 74.7 68 63.2
Ca_30729_v3 Cicer arietinum L. HOM05D004178 ORTHO05D005204 1.8e-11 72.4 68 61.8
TPR.G3678 Trifolium pratense HOM05D004178 ORTHO05D005204 1.8e-11 72.4 68 61.8
Medtr4g061050 Medicago truncatula HOM05D004178 ORTHO05D005204 2.0e-10 68.9 68 60.3
TPR.G2991 Trifolium pratense HOM05D004178 ORTHO05D005204 2.6e-10 68.6 68 58.8
SHI13977 Sapria himalayana HOM05D004178 ORTHO05D005204 3.4e-10 68.2 64 57.8
Glyma.09G229900 Glycine max HOM05D004178 ORTHO05D005204 7.5e-10 67.0 68 58.8
Lj3g0020737 Lotus japonicus HOM05D004178 ORTHO05D005204 1.3e-09 66.2 68 57.4
arahy.Tifrunner.gnm1.ann1.2YP1UN Arachis hypogaea HOM05D004178 ORTHO05D005204 1.7e-09 65.9 68 57.4
arahy.Tifrunner.gnm1.ann1.D3FWW6 Arachis hypogaea HOM05D004178 ORTHO05D005204 1.7e-09 65.9 68 57.4
Zm00001eb309160 Zea mays HOM05D004178 ORTHO05D005204 1.7e-09 65.9 75 57.3
Haze_13892 Corylus avellana HOM05D004178 ORTHO05D005204 2.2e-09 65.5 64 57.8
TWI14G1279 Tripterygium wilfordii HOM05D004178 ORTHO05D005204 2.2e-09 65.5 68 55.9
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 2.9e-09 65.1 69 50.7
Lalb_Chr19g0140351 Lupinus albus HOM05D004178 ORTHO05D005204 3.7e-09 64.7 62 62.9
Potri.003G107700 Populus trichocarpa HOM05D004178 ORTHO05D005204 3.7e-09 64.7 68 55.9
BcaC03g13191 Brassica carinata HOM05D004178 ORTHO05D005204 6.4e-09 63.9 64 51.6
GSVIVG01013865001 Vitis vinifera HOM05D004178 ORTHO05D005204 6.4e-09 63.9 68 57.4
Phvul.011G007300 Phaseolus vulgaris HOM05D004178 ORTHO05D005204 8.3e-09 63.5 68 55.9
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 1.1e-08 63.2 73 52.1
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 1.1e-08 63.2 68 54.4
CAN.G515.9 Capsicum annuum HOM05D004178 ORTHO05D005204 1.4e-08 62.8 68 55.9
Eucgr.A02900 Eucalyptus grandis HOM05D004178 ORTHO05D005204 1.4e-08 62.8 68 54.4
VMungo1127G0288 Vigna mungo HOM05D004178 ORTHO05D005204 1.4e-08 62.8 62 62.9
Sabra03G0074500 Salix brachista HOM05D004178 ORTHO05D005204 1.9e-08 62.4 68 54.4
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 3.2e-08 61.6 73 50.7
Cpa.g.sc1936.1 Carica papaya HOM05D004178 ORTHO05D005204 3.2e-08 61.6 68 52.9
Solyc05g051680.4 Solanum lycopersicum HOM05D004178 ORTHO05D005204 3.2e-08 61.6 68 54.4
Sopen05g030150 Solanum pennellii HOM05D004178 ORTHO05D005204 3.2e-08 61.6 68 54.4
TAR375G0252 Trochodendron aralioides HOM05D004178 ORTHO05D005204 3.2e-08 61.6 68 54.4
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 4.1e-08 61.2 73 50.7
Thhalv10003566m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 4.1e-08 61.2 73 49.3
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 4.1e-08 61.2 73 47.9
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 5.4e-08 60.8 68 52.9
Sp2g24660 Schrenkiella parvula HOM05D004178 ORTHO05D005204 5.4e-08 60.8 73 50.7
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 7.1e-08 60.5 73 49.3
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 7.1e-08 60.5 73 49.3
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 7.1e-08 60.5 73 49.3
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 7.1e-08 60.5 73 49.3
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 7.1e-08 60.5 73 49.3
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 7.1e-08 60.5 73 49.3
FAN03G3201 Fragaria x ananassa HOM05D004178 ORTHO05D005204 7.1e-08 60.5 71 52.1
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 9.2e-08 60.1 73 47.9
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 9.2e-08 60.1 68 54.4
PGSC0003DMG400014287 Solanum tuberosum HOM05D004178 ORTHO05D005204 1.2e-07 59.7 68 52.9
AL1G57860 Arabidopsis lyrata HOM05D004178 ORTHO05D005039 1.6e-07 59.3 68 50.0
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 1.6e-07 59.3 73 47.9
Nitab4.5_0000818g0230 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.6e-07 59.3 68 52.9
ATR0317G120 Amborella trichopoda HOM05D004178 ORTHO05D005204 2.1e-07 58.9 68 51.5
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 2.1e-07 58.9 68 52.9
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 2.1e-07 58.9 68 51.5
SGA_v2.0_scaffold2G01219 Striga asiatica HOM05D004178 ORTHO05D005204 2.1e-07 58.9 64 53.1
MD07G1252300 Malus domestica HOM05D004178 ORTHO05D005204 2.7e-07 58.5 68 52.9
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 2.7e-07 58.5 68 54.4
Prupe.2G275800 Prunus persica HOM05D004178 ORTHO05D005204 2.7e-07 58.5 68 54.4
Rhsim03G0166000 Rhododendron simsii HOM05D004178 ORTHO05D005204 2.7e-07 58.5 68 51.5
BolC2t06288H Brassica oleracea HOM05D004178 ORTHO05D005204 3.5e-07 58.2 68 48.5
BraA02t04928Z Brassica rapa HOM05D004178 ORTHO05D005204 3.5e-07 58.2 68 48.5
CDE11G0310 Ceratophyllum demersum HOM05D004178 ORTHO05D005204 3.5e-07 58.2 62 56.5
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 3.5e-07 58.2 68 52.9
BcaB05g21602 Brassica carinata HOM05D004178 ORTHO05D005204 4.6e-07 57.8 68 48.5
BcaNung06187 Brassica carinata HOM05D004178 ORTHO05D005204 4.6e-07 57.8 68 48.5
C02p03240 Brassica napus HOM05D004178 ORTHO05D005204 4.6e-07 57.8 68 48.5
AL6G18000 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 6.0e-07 57.4 68 48.5
SalBow5G4122 Salvia bowleyana HOM05D004178 ORTHO05D005204 6.0e-07 57.4 68 51.5
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 7.8e-07 57.0 68 47.1
Cfa008151 Carpinus fangiana HOM05D004178 ORTHO05D005204 7.8e-07 57.0 68 52.9
CSS0036077 Camellia sinensis var. sinensis HOM05D004178 ORTHO05D005204 1.0e-06 56.6 68 51.5
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 1.0e-06 56.6 68 50.0
Nitab4.5_0003647g0020 Nicotiana tabacum HOM05D004178 ORTHO05D005204 1.0e-06 56.6 68 52.9
Aqoxy5G03870 Aquilegia oxysepala HOM05D004178 ORTHO05D005204 1.3e-06 56.2 68 51.5
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 1.3e-06 56.2 68 52.9
Ah.07g207660 Amaranthus hybridus HOM05D004178 ORTHO05D005204 1.7e-06 55.8 68 55.9
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 1.7e-06 55.8 64 53.1
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 2.3e-06 55.5 75 49.3
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 3.0e-06 55.1 68 47.1
COL.COLO4_14102 Corchorus olitorius HOM05D004178 ORTHO05D005204 3.0e-06 55.1 68 51.5
Thhalv10012532m.g Eutrema salsugineum HOM05D004178 ORTHO05D005204 3.0e-06 55.1 68 48.5
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 3.0e-06 55.1 68 48.5
Atru.chr1.752 Acer truncatum HOM05D004178 ORTHO05D005204 3.9e-06 54.7 68 52.9
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 3.9e-06 54.7 62 53.2
CANSAT56G2947 Cannabis sativa HOM05D004178 ORTHO05D005204 3.9e-06 54.7 68 50.0
FvH4_7g27291 Fragaria vesca HOM05D004178 ORTHO05D005204 3.9e-06 54.7 75 49.3
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.9e-06 54.7 75 49.3
FAN06G0596 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.9e-06 54.7 75 49.3
FAN06G2180 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.9e-06 54.7 75 49.3
FAN10G0409 Fragaria x ananassa HOM05D004178 ORTHO05D005204 3.9e-06 54.7 75 49.3
HPP92_027283 Vanilla planifolia HOM05D004178 ORTHO05D005204 3.9e-06 54.7 63 50.8
MSTRG.8830 Avicennia marina HOM05D004178 ORTHO05D005204 5.1e-06 54.3 68 51.5
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 5.1e-06 54.3 68 51.5
Cc02_g04400 Coffea canephora HOM05D004178 ORTHO05D005204 6.6e-06 53.9 68 48.5
ECA232G0935 Erigeron canadensis HOM05D004178 ORTHO05D005204 6.6e-06 53.9 68 50.0
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 6.6e-06 53.9 68 50.0
Duzib084G0917 Durio zibethinus HOM05D004178 ORTHO05D005204 8.6e-06 53.5 68 50.0


User provided reference genes

Program Settings