Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.8e-204 715.7 353 100.0
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.8e-180 636.0 354 89.5
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 9.1e-177 623.6 357 88.0
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 1.5e-174 616.3 357 86.8
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 8.0e-157 557.4 343 76.7
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.2e-155 553.5 356 75.8
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 2.6e-155 552.4 351 77.2
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 5.7e-155 551.2 354 76.3
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.2e-154 549.3 340 77.6
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 4.9e-154 548.1 345 77.1
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.4e-153 545.8 356 74.4
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.3e-151 540.0 333 77.8
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 3.9e-151 538.5 340 77.1
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 8.0e-149 530.8 338 74.9
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 2.3e-148 529.3 341 74.8
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 3.1e-148 528.9 338 74.3
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 5.2e-148 528.1 350 73.4
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 5.2e-148 528.1 350 73.1
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 8.9e-148 527.3 313 79.6
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 1.2e-147 526.9 330 76.1
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.2e-147 526.9 350 72.0
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.5e-147 526.6 333 74.8
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 2.0e-147 526.2 339 74.3
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.4e-147 525.0 328 75.3
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 5.8e-147 524.6 330 74.5
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 5.8e-147 524.6 354 72.6
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 7.5e-147 524.2 329 76.0
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 9.8e-147 523.9 309 78.3
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.3e-146 523.5 328 74.7
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.7e-146 523.1 328 75.3
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 2.2e-146 522.7 336 73.2
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 8.3e-146 520.8 331 73.1
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 1.4e-145 520.0 333 74.5
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 1.4e-145 520.0 339 72.0
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.9e-145 519.6 307 78.2
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 5.4e-145 518.1 337 71.8
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 9.2e-145 517.3 329 75.4
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.2e-144 516.9 339 73.5
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.6e-144 516.5 339 73.5
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 1.6e-144 516.5 328 74.7
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 2.7e-144 515.8 328 74.7
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 3.5e-144 515.4 314 77.7
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 4.6e-144 515.0 331 72.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 5.0e-143 511.5 331 72.8
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 6.6e-143 511.1 349 71.1
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 8.6e-143 510.8 307 76.2
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.9e-142 509.6 339 73.2
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 2.5e-142 509.2 327 72.8
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 1.2e-141 506.9 307 75.2
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 2.8e-141 505.8 330 73.0
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 6.2e-141 504.6 329 72.3
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 1.1e-140 503.8 324 73.5
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.4e-140 503.4 330 71.5
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 3.1e-140 502.3 330 71.2
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 3.1e-140 502.3 328 72.3
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 4.0e-140 501.9 340 70.0
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.0e-140 501.9 333 73.0
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 6.8e-140 501.1 340 69.1
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 8.9e-140 500.7 329 71.7
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 8.9e-140 500.7 340 69.7
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 8.9e-140 500.7 337 69.7
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 2.6e-139 499.2 355 69.9
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 3.4e-139 498.8 355 69.9
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.4e-139 498.4 341 69.2
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.4e-139 498.4 341 69.2
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 5.8e-139 498.0 323 74.3
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 5.8e-139 498.0 325 71.4
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 7.5e-139 497.7 325 71.4
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 9.8e-139 497.3 341 68.9
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 9.8e-139 497.3 328 72.3
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.7e-138 496.5 338 68.9
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 2.9e-138 495.7 339 70.2
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 4.9e-138 495.0 351 68.4
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 6.4e-138 494.6 338 69.2
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 8.3e-138 494.2 341 68.6
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 8.3e-138 494.2 341 68.6
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 8.3e-138 494.2 340 70.3
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 1.1e-137 493.8 308 73.7
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.4e-137 493.4 331 71.0
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 1.4e-137 493.4 338 68.3
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 2.4e-137 492.7 341 71.3
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 3.2e-137 492.3 338 69.5
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 5.4e-137 491.5 330 70.0
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.7e-135 486.5 330 69.7
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.3e-135 486.1 329 70.5
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 1.1e-134 483.8 337 70.3
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 3.3e-134 482.3 329 70.5
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.6e-133 479.9 340 68.8
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 2.8e-133 479.2 309 73.1
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.0e-131 473.0 313 72.5
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 9.9e-131 470.7 337 69.4
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.3e-130 470.3 375 62.7
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 5.4e-129 464.9 330 68.2
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 5.4e-129 464.9 330 67.9
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 9.2e-129 464.2 323 67.2
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 2.7e-128 462.6 330 66.1
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 7.8e-128 461.1 307 69.4
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 3.0e-127 459.1 297 72.7
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 6.6e-127 458.0 322 69.3
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.5e-126 456.8 323 68.1
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 5.6e-126 454.9 338 65.7
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 1.2e-125 453.8 328 67.1
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.8e-124 449.9 329 63.5
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 5.2e-124 448.4 309 69.6
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.2e-123 447.2 359 63.2
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.5e-123 446.8 349 63.0
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 1.7e-122 443.4 264 77.7
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.9e-122 442.6 303 68.6
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 6.4e-122 441.4 264 78.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 8.4e-122 441.0 338 62.7
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.4e-121 440.3 306 65.4
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 9.3e-121 437.6 319 67.1
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.2e-120 437.2 309 67.6
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 5.6e-118 428.3 283 71.0
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 1.3e-117 427.2 332 63.0
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 3.1e-116 422.5 350 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 4.0e-116 422.2 306 64.4
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 2.6e-115 419.5 276 70.7
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 2.6e-115 419.5 330 60.9
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.1e-112 409.8 246 78.0
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 8.1e-109 397.9 307 61.6
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 1.8e-108 396.7 267 70.8
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 5.5e-105 385.2 315 58.7
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.5e-104 382.5 313 59.4
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 2.5e-102 376.3 367 53.7
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 6.7e-95 351.7 323 58.2
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 3.1e-92 342.8 221 71.9
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.1e-88 328.6 226 67.3
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 1.8e-84 317.0 306 52.6
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 2.4e-84 316.6 238 62.2
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 6.9e-84 315.1 258 60.5
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.1e-80 302.0 238 61.3
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 2.5e-73 280.0 261 55.2
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.1e-68 264.6 291 49.5
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 3.2e-65 253.1 170 70.6
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 1.3e-61 241.1 173 67.6
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 4.2e-57 226.1 141 71.6
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.6e-54 216.9 195 57.9
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 2.5e-49 200.3 177 57.6
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 7.8e-43 178.7 120 70.8
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 6.4e-37 159.1 101 77.2
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.1e-28 131.7 171 48.5
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 4.3e-25 119.8 77 63.6
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 9.9e-22 108.6 64 76.6
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 2.2e-21 107.5 74 68.9
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 6.4e-21 105.9 66 71.2
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.3e-17 93.2 55 78.2
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 2.9e-13 80.5 76 50.0
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 1.9e-12 77.8 155 33.5
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 4.1e-12 76.6 200 26.5
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 3.0e-10 70.5 191 28.3
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 8.7e-10 68.9 186 30.1
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 1.1e-09 68.6 81 49.4
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 2.5e-09 67.4 79 49.4
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 1.2e-08 65.1 95 36.8
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.2e-08 65.1 41 70.7
AagrBONN_evm.TU.Sc2ySwM_117.2157 Anthoceros agrestis HOM05D002024 ORTHO05D007288 2.1e-08 64.3 154 31.8
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 3.6e-08 63.5 181 31.5
MCO07G578 Micromonas commoda HOM05D002024 ORTHO05D004352 1.4e-07 61.6 153 30.7
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 4.0e-07 60.1 153 28.8
A05p13190 Brassica napus HOM05D002024 ORTHO05D007288 6.9e-07 59.3 155 29.7
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 6.9e-07 59.3 157 30.6
Duzib248G0941 Durio zibethinus HOM05D002024 ORTHO05D007288 6.9e-07 59.3 155 31.6
A04p24930 Brassica napus HOM05D002024 ORTHO05D007288 9.0e-07 58.9 157 30.6
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 9.0e-07 58.9 220 25.5
Psat7g157200 Pisum sativum HOM05D002024 ORTHO05D007288 9.0e-07 58.9 150 30.0
Sp4g14790 Schrenkiella parvula HOM05D002024 ORTHO05D007288 2.0e-06 57.8 158 31.6
Phvul.011G103500 Phaseolus vulgaris HOM05D002024 ORTHO05D007288 2.6e-06 57.4 154 29.9
VMungo1127G2134 Vigna mungo HOM05D002024 ORTHO05D007288 2.6e-06 57.4 154 29.9
BraA05t20260Z Brassica rapa HOM05D002024 ORTHO05D007288 3.4e-06 57.0 155 29.0
THA.LOC104826151 Tarenaya hassleriana HOM05D002024 ORTHO05D007288 3.4e-06 57.0 156 29.5
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 4.4e-06 56.6 153 28.8
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 5.8e-06 56.2 153 28.8
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 5.8e-06 56.2 153 28.8
Thecc.02G316100 Theobroma cacao HOM05D002024 ORTHO05D007288 7.6e-06 55.8 155 29.0
GSVIVG01030425001 Vitis vinifera HOM05D002024 ORTHO05D007288 7.6e-06 55.8 154 29.9
Cfa025086 Carpinus fangiana HOM05D015906 ORTHO05D028597 9.9e-06 55.5 97 35.1


User provided reference genes

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