Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g012160 Medicago truncatula HOM05D003327 ORTHO05D030138 8.5e-89 330.9 186 100.0
Medtr1g012210 Medicago truncatula HOM05D003327 ORTHO05D030138 8.5e-89 330.9 186 100.0
Medtr1g013090 Medicago truncatula HOM05D003327 ORTHO05D030138 1.9e-64 250.0 195 77.4
Medtr3g008410 Medicago truncatula HOM05D003327 ORTHO05D030138 3.4e-45 186.0 188 65.4
TPR.G8402 Trifolium pratense HOM05D003327 ORTHO05D004535 2.5e-24 116.7 83 68.7
Ca_26452_v3 Cicer arietinum L. HOM05D003327 ORTHO05D004535 2.8e-23 113.2 86 66.3
Medtr7g068630 Medicago truncatula HOM05D003327 ORTHO05D004535 3.6e-23 112.8 86 62.8
Psat3g129480 Pisum sativum HOM05D003327 ORTHO05D004535 8.1e-23 111.7 86 64.0
Lj3g0008565 Lotus japonicus HOM05D003327 ORTHO05D004535 1.3e-20 104.4 80 65.0
arahy.Tifrunner.gnm1.ann1.2625MI Arachis hypogaea HOM05D003327 ORTHO05D004535 1.9e-19 100.5 86 58.1
arahy.Tifrunner.gnm1.ann1.HZLZ57 Arachis hypogaea HOM05D003327 ORTHO05D004535 3.2e-19 99.8 86 58.1
Glyma.12G203300 Glycine max HOM05D003327 ORTHO05D004535 4.1e-19 99.4 90 56.7
Glyma.13G298300 Glycine max HOM05D003327 ORTHO05D004535 5.4e-19 99.0 90 55.6
VMungo1080G1483 Vigna mungo HOM05D003327 ORTHO05D004535 1.1e-16 91.3 89 53.9
RcHm_v2.0_Chr7g0226921 Rosa chinensis HOM05D003327 ORTHO05D004535 2.5e-16 90.1 80 60.0
Prupe.8G033800 Prunus persica HOM05D003327 ORTHO05D004535 3.3e-16 89.7 80 55.0
Phvul.005G104900 Phaseolus vulgaris HOM05D003327 ORTHO05D004535 5.6e-16 89.0 90 52.2
FvH4_5g31520 Fragaria vesca HOM05D003327 ORTHO05D004535 6.2e-15 85.5 80 56.2
RcHm_v2.0_Chr5g0050851 Rosa chinensis HOM05D003327 ORTHO05D004535 1.8e-14 84.0 86 51.2
MD17G1244100 Malus domestica HOM05D003327 ORTHO05D004535 2.4e-14 83.6 86 50.0
FvH4_2g13420 Fragaria vesca HOM05D003327 ORTHO05D004535 5.2e-14 82.4 86 48.8
FAN15G1216 Fragaria x ananassa HOM05D003327 ORTHO05D004535 5.2e-14 82.4 86 48.8
FAN24G1643 Fragaria x ananassa HOM05D003327 ORTHO05D004535 5.2e-14 82.4 86 48.8
FAN27G1055 Fragaria x ananassa HOM05D003327 ORTHO05D004535 5.2e-14 82.4 86 48.8
Prupe.3G157000 Prunus persica HOM05D003327 ORTHO05D004535 2.0e-13 80.5 86 48.8
MD09G1251900 Malus domestica HOM05D003327 ORTHO05D004535 4.4e-13 79.3 86 48.8
PGR142G2878 Punica granatum HOM05D003327 ORTHO05D004535 1.4e-11 74.3 80 48.8
Migut.H01067 Erythranthe guttata HOM05D003327 ORTHO05D004535 5.4e-11 72.4 80 46.2
MELO3C022275.2 Cucumis melo HOM05D003327 ORTHO05D004535 9.3e-11 71.6 86 46.5
Lalb_Chr22g0356511 Lupinus albus HOM05D003327 ORTHO05D004535 1.2e-10 71.2 65 58.5
Rhsim06G0147000 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.6e-10 70.9 79 44.3
QL05p081739 Quercus lobata HOM05D003327 ORTHO05D004535 2.1e-10 70.5 94 41.5
ClCG06G002520 Citrullus lanatus HOM05D003327 ORTHO05D004535 2.7e-10 70.1 86 46.5
CsaV3_6G008590 Cucumis sativus L. HOM05D003327 ORTHO05D004535 2.7e-10 70.1 86 46.5
Atru.chr6.3011 Acer truncatum HOM05D003327 ORTHO05D004535 3.5e-10 69.7 82 45.1
QL08p038229 Quercus lobata HOM05D003327 ORTHO05D004535 7.8e-10 68.6 86 43.0
MSTRG.14206 Avicennia marina HOM05D003327 ORTHO05D004535 1.0e-09 68.2 80 46.2
Cc07_g08310 Coffea canephora HOM05D003327 ORTHO05D004535 1.7e-09 67.4 86 41.9
Dinv23663 Davidia involucrata HOM05D003327 ORTHO05D004535 1.7e-09 67.4 79 49.4
Ciclev10018370m.g Citrus clementina HOM05D003327 ORTHO05D004535 2.3e-09 67.0 85 44.7
Gohir.D02G180900 Gossypium hirsutum HOM05D003327 ORTHO05D004535 2.3e-09 67.0 92 43.5
Gorai.005G202800 Gossypium raimondii HOM05D003327 ORTHO05D004535 2.3e-09 67.0 92 43.5
Atru.chr9.1814 Acer truncatum HOM05D003327 ORTHO05D004535 3.0e-09 66.6 82 43.9
COL.COLO4_06982 Corchorus olitorius HOM05D003327 ORTHO05D004535 3.9e-09 66.2 92 42.4
Solyc07g054200.4 Solanum lycopersicum HOM05D003327 ORTHO05D004535 8.7e-09 65.1 77 44.2
vmacro12281 Vaccinium macrocarpon HOM05D003327 ORTHO05D004535 8.7e-09 65.1 79 44.3
Cfa014585 Carpinus fangiana HOM05D003327 ORTHO05D004535 1.1e-08 64.7 87 43.7
Eucgr.K00962 Eucalyptus grandis HOM05D003327 ORTHO05D004535 2.5e-08 63.5 84 41.7
Haze_05508 Corylus avellana HOM05D003327 ORTHO05D004535 4.3e-08 62.8 82 43.9
Gohir.A03G157700 Gossypium hirsutum HOM05D003327 ORTHO05D004535 7.3e-08 62.0 92 41.3
Peaxi162Scf00132g00526 Petunia axillaris HOM05D003327 ORTHO05D004535 7.3e-08 62.0 77 40.3
Duzib132G0920 Durio zibethinus HOM05D003327 ORTHO05D004535 9.6e-08 61.6 87 40.2
MBI19_g29442_MAGBIO Magnolia biondii HOM05D003327 ORTHO05D004535 9.6e-08 61.6 79 44.3
Sopen07g028130 Solanum pennellii HOM05D003327 ORTHO05D004535 9.6e-08 61.6 77 42.9
TWI36G1653 Tripterygium wilfordii HOM05D003327 ORTHO05D004535 1.3e-07 61.2 78 42.3
Manes.13G148100 Manihot esculenta HOM05D003327 ORTHO05D004535 2.1e-07 60.5 85 41.2
COL.COLO4_09076 Corchorus olitorius HOM05D003327 ORTHO05D004535 2.8e-07 60.1 92 39.1
Haze_05514 Corylus avellana HOM05D003327 ORTHO05D004535 2.8e-07 60.1 81 43.2
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 4.8e-07 59.3 70 45.7
Haze_13137 Corylus avellana HOM05D003327 ORTHO05D004535 4.8e-07 59.3 87 41.4
PGSC0003DMG400018313 Solanum tuberosum HOM05D003327 ORTHO05D004535 4.8e-07 59.3 77 41.6
A09p02770 Brassica napus HOM05D003327 ORTHO05D004535 6.2e-07 58.9 80 41.2
BraA09t35919Z Brassica rapa HOM05D003327 ORTHO05D004535 6.2e-07 58.9 80 41.2
CSS0024624 Camellia sinensis var. sinensis HOM05D003327 ORTHO05D004535 6.2e-07 58.9 79 40.5
CiPaw.06G027000 Carya illinoinensis HOM05D003327 ORTHO05D004535 6.2e-07 58.9 89 38.2
BcaB01g01947 Brassica carinata HOM05D003327 ORTHO05D004535 8.1e-07 58.5 80 40.0
BcaC04g23971 Brassica carinata HOM05D003327 ORTHO05D004535 8.1e-07 58.5 80 41.2
C09p02840 Brassica napus HOM05D003327 ORTHO05D004535 8.1e-07 58.5 80 41.2
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.1e-06 58.2 78 41.0
Thecc.02G177000 Theobroma cacao HOM05D003327 ORTHO05D004535 1.1e-06 58.2 92 38.0
Sc21g0000860 Simmondsia chinensis HOM05D003327 ORTHO05D004535 3.1e-06 56.6 78 43.6
Aa31LG1G22990 Aethionema arabicum HOM05D003327 ORTHO05D004535 4.0e-06 56.2 81 37.0
Carub.0008s0242 Capsella rubella HOM05D003327 ORTHO05D004535 5.3e-06 55.8 85 38.8
CARHR251830 Cardamine hirsuta HOM05D003327 ORTHO05D004535 5.3e-06 55.8 87 36.8
Actinidia11048 Actinidia chinensis HOM05D003327 ORTHO05D004535 6.9e-06 55.5 79 39.2
AL7G10490 Arabidopsis lyrata HOM05D003327 ORTHO05D004535 6.9e-06 55.5 81 37.0
Cpa.g.sc34.134 Carica papaya HOM05D003327 ORTHO05D004535 6.9e-06 55.5 84 40.5
Aqoxy2G01527 Aquilegia oxysepala HOM05D003327 ORTHO05D004535 9.0e-06 55.1 78 43.6
BolC9t53210H Brassica oleracea HOM05D003327 ORTHO05D004535 9.0e-06 55.1 80 40.0


User provided reference genes

Program Settings