Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 0.0e+00 1125.5 575 100.0
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 3.4e-274 948.0 586 85.0
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.3e-265 919.5 564 86.2
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 3.9e-262 907.9 518 90.3
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 5.2e-254 880.9 582 79.6
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 2.4e-251 872.1 582 79.7
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 3.5e-250 868.2 604 77.0
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 5.0e-249 864.4 585 78.6
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 4.0e-246 854.7 584 78.3
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 2.8e-244 848.6 593 76.4
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.7e-236 822.8 598 73.6
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 3.5e-234 815.1 602 74.3
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 3.6e-231 805.1 586 73.0
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 4.7e-231 804.7 515 79.0
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.5e-229 799.7 502 80.7
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.5e-229 799.7 502 80.7
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.6e-229 798.9 597 72.0
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 4.4e-229 798.1 594 72.2
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 1.3e-228 796.6 596 71.8
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 1.3e-228 796.6 508 79.5
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 2.2e-228 795.8 576 72.2
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 2.8e-228 795.4 559 74.1
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 1.1e-227 793.5 592 72.1
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 9.2e-227 790.4 507 77.9
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 2.7e-226 788.9 514 78.4
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 3.5e-226 788.5 505 78.0
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 3.5e-226 788.5 592 72.0
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 7.8e-226 787.3 593 72.0
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 1.3e-225 786.6 505 79.2
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.7e-225 786.2 519 76.9
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 2.3e-225 785.8 599 69.8
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 2.3e-225 785.8 568 72.2
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 3.9e-225 785.0 598 70.6
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 4.3e-224 781.6 581 72.1
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 3.6e-223 778.5 513 76.4
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 6.1e-223 777.7 503 78.5
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 8.0e-223 777.3 601 70.4
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 6.8e-222 774.2 501 77.8
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 1.5e-221 773.1 500 79.4
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 3.4e-221 771.9 598 69.4
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 5.8e-221 771.2 601 69.1
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 1.3e-220 770.0 578 71.6
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 4.9e-220 768.1 547 74.8
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 4.9e-220 768.1 595 68.9
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 8.3e-220 767.3 584 69.0
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 8.3e-220 767.3 508 76.2
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 1.1e-219 766.9 525 73.9
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 1.4e-219 766.5 573 70.2
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 3.2e-219 765.4 501 76.8
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 7.0e-219 764.2 618 70.1
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 7.0e-219 764.2 598 68.4
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.6e-218 763.1 594 68.9
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 2.0e-218 762.7 591 69.7
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 3.5e-218 761.9 505 78.6
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 4.6e-218 761.5 599 66.9
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 4.6e-218 761.5 599 66.9
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 7.8e-218 760.8 500 76.0
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 2.3e-217 759.2 597 67.7
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 3.0e-217 758.8 509 74.9
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 6.6e-217 757.7 599 66.6
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 8.6e-217 757.3 534 72.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 1.5e-216 756.5 500 76.0
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.5e-216 755.7 506 75.3
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 2.5e-216 755.7 594 69.5
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 7.3e-216 754.2 506 75.3
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 9.5e-216 753.8 558 72.4
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.2e-215 753.4 505 74.3
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 1.6e-215 753.1 599 67.8
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 1.6e-215 753.1 501 75.4
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.6e-215 753.1 594 69.2
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 2.8e-215 752.3 520 74.0
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 6.2e-215 751.1 500 75.2
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 8.0e-215 750.7 575 68.2
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 8.0e-215 750.7 579 68.2
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 4.0e-214 748.4 566 69.6
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.6e-213 745.7 573 68.4
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.8e-213 744.6 603 67.7
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 5.8e-213 744.6 477 78.2
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 2.4e-211 739.2 669 62.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 4.3e-208 728.4 589 67.6
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 7.3e-208 727.6 553 69.8
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-206 723.8 581 65.7
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 5.4e-203 711.4 580 65.5
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 2.1e-202 709.5 551 69.7
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 2.7e-202 709.1 598 65.6
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 2.8e-199 699.1 509 72.9
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 3.6e-199 698.7 461 77.9
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 7.6e-197 691.0 653 60.2
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 3.8e-196 688.7 511 71.6
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.9e-195 686.4 575 64.0
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 5.1e-193 678.3 472 76.5
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 6.6e-193 677.9 506 70.8
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 6.6e-193 677.9 639 60.1
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 5.6e-192 674.9 452 75.9
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 5.6e-192 674.9 601 64.6
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 1.5e-189 666.8 514 67.9
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.3e-185 653.7 459 71.9
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 5.1e-185 651.7 488 66.2
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 4.3e-184 648.7 476 70.0
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 4.8e-183 645.2 545 63.5
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 2.4e-179 632.9 596 59.9
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 1.3e-169 600.5 366 82.0
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 3.8e-164 582.4 439 69.5
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.1e-162 576.6 556 58.3
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.8e-161 573.5 532 60.5
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.3e-161 573.2 496 59.5
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.1e-139 501.1 443 56.9
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 1.0e-137 494.6 345 74.5
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.3e-135 487.6 495 54.5
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 3.1e-134 483.0 450 54.2
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 7.7e-133 478.4 540 49.4
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 3.2e-131 473.0 484 51.4
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 5.4e-126 455.7 442 57.5
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 9.1e-126 454.9 505 54.3
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.9e-123 447.2 266 88.3
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 2.1e-122 443.7 382 65.4
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 2.3e-121 440.3 376 65.4
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 3.3e-115 419.9 382 61.0
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.3e-108 397.9 488 45.7
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 4.4e-88 329.7 353 50.4
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 1.3e-84 318.2 204 76.0
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.7e-76 291.2 262 59.5
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.2e-72 278.5 202 65.3
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 1.3e-68 265.0 173 76.3
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 2.5e-67 260.8 277 53.8
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.5e-64 251.5 400 40.2
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 5.8e-64 249.6 262 46.9
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 9.9e-64 248.8 178 69.7
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 4.2e-62 243.4 201 67.2
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 9.6e-59 232.3 292 45.9
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 8.1e-58 229.2 177 71.8
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 5.3e-57 226.5 136 80.1
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 8.4e-55 219.2 229 52.8
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 3.2e-46 190.7 113 82.3
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 5.1e-44 183.3 272 41.9
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.1e-44 183.3 128 69.5
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.6e-37 161.8 128 64.8
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 6.3e-34 149.8 122 63.1
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 2.4e-33 147.9 269 35.3
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 1.2e-32 145.6 106 69.8
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 2.9e-31 141.0 83 79.5
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 4.8e-26 123.6 95 67.4
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 6.3e-26 123.2 123 51.2
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 7.7e-24 116.3 269 34.2
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.3e-23 115.5 228 37.3
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 2.5e-22 111.3 112 51.8
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 4.4e-19 100.5 77 66.2
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 9.7e-19 99.4 91 52.7
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 1.3e-18 99.0 56 89.3
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 2.8e-18 97.8 57 89.5
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.4e-17 94.7 91 50.5
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 5.3e-17 93.6 71 64.8
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 7.7e-16 89.7 71 62.0
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 7.2e-14 83.2 54 75.9
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.3e-12 78.2 254 28.7
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 2.8e-10 71.2 59 57.6
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 2.0e-08 65.1 135 33.3
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.0e-07 62.8 36 80.6
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.3e-07 61.6 40 77.5
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 4.2e-06 57.4 285 22.8
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 7.2e-06 56.6 52 53.8


User provided reference genes

Program Settings