Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 5.1e-78 294.3 142 100.0
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 4.3e-61 238.0 186 66.1
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.7e-60 235.0 186 66.7
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.7e-60 235.0 186 66.7
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 3.8e-57 224.9 186 64.0
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.0e-57 224.6 186 63.4
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 5.0e-57 224.6 186 64.0
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 6.5e-57 224.2 186 63.4
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 1.4e-56 223.0 186 62.9
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 3.2e-56 221.9 186 64.0
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 3.2e-56 221.9 186 62.9
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 9.3e-56 220.3 183 62.8
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-55 219.9 186 62.4
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-55 219.9 186 62.4
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-55 219.9 186 62.4
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-55 219.9 186 62.4
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-55 219.9 186 62.4
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 1.2e-55 219.9 186 62.4
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 2.1e-55 219.2 186 62.9
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 2.1e-55 219.2 186 62.9
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 1.0e-54 216.9 186 62.4
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 3.0e-54 215.3 186 61.8
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.1e-54 214.5 165 66.7
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 5.1e-54 214.5 165 66.7
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 6.7e-54 214.2 186 60.2
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 8.7e-54 213.8 186 61.8
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.5e-53 212.2 165 66.1
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 3.3e-53 211.8 186 61.8
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 3.3e-53 211.8 186 61.8
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 3.3e-53 211.8 186 61.8
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 3.3e-53 211.8 186 61.8
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 3.3e-53 211.8 186 61.8
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 3.3e-53 211.8 186 61.8
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 3.3e-53 211.8 175 65.1
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.3e-53 211.8 172 64.0
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 5.7e-53 211.1 186 61.8
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 1.3e-52 209.9 186 61.3
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 1.6e-52 209.5 186 61.3
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 2.2e-52 209.1 186 61.3
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 2.2e-52 209.1 186 61.3
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 2.2e-52 209.1 186 61.3
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 3.7e-52 208.4 172 63.4
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 4.8e-52 208.0 154 70.8
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 1.1e-51 206.8 183 61.2
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.7e-50 200.7 183 58.5
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 1.0e-49 200.3 144 73.6
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.7e-49 199.5 156 65.4
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 2.9e-49 198.7 172 61.6
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 2.9e-49 198.7 172 61.6
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 5.5e-48 194.5 185 57.3
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 2.1e-47 192.6 186 57.0
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 2.7e-47 192.2 186 57.0
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 3.0e-46 188.7 175 58.3
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 8.8e-46 187.2 171 62.0
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 1.1e-45 186.8 142 65.5
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 2.2e-44 182.6 122 75.4
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 6.3e-44 181.0 186 51.6
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 3.4e-42 175.3 99 84.8
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 7.7e-42 174.1 139 62.6
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.0e-41 173.7 99 83.8
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.7e-41 172.9 143 65.7
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 2.2e-41 172.6 116 72.4
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 2.2e-41 172.6 122 71.3
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 2.2e-41 172.6 122 71.3
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 2.2e-41 172.6 122 71.3
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 5.0e-41 171.4 104 78.8
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 6.5e-41 171.0 120 70.8
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 8.5e-41 170.6 97 83.5
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 1.1e-40 170.2 116 73.3
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 2.5e-40 169.1 121 69.4
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 3.2e-40 168.7 96 82.3
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 3.2e-40 168.7 96 82.3
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 3.2e-40 168.7 95 83.2
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 4.2e-40 168.3 113 72.6
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 5.5e-40 167.9 123 68.3
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 1.2e-39 166.8 119 69.7
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 1.2e-39 166.8 122 68.0
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 1.2e-39 166.8 133 66.9
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 1.6e-39 166.4 98 79.6
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 2.1e-39 166.0 113 72.6
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 4.7e-39 164.9 101 78.2
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 6.1e-39 164.5 122 71.3
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 6.1e-39 164.5 97 82.5
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 7.9e-39 164.1 98 81.6
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 1.0e-38 163.7 123 66.7
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 1.4e-38 163.3 96 80.2
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 1.8e-38 162.9 115 73.0
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 3.9e-38 161.8 99 77.8
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 6.7e-38 161.0 183 50.3
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 8.8e-38 160.6 122 68.0
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.1e-37 160.2 119 67.2
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 1.5e-37 159.8 99 80.8
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 1.5e-37 159.8 99 80.8
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 2.0e-37 159.5 122 67.2
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 3.3e-37 158.7 172 51.2
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 3.3e-37 158.7 90 82.2
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 4.4e-37 158.3 95 77.9
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 5.7e-37 157.9 91 80.2
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 7.4e-37 157.5 96 77.1
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 9.7e-37 157.1 98 79.6
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.7e-36 156.4 113 67.3
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 2.4e-35 152.5 93 76.3
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 7.0e-35 151.0 122 65.6
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.6e-34 149.1 183 49.2
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 3.5e-34 148.7 88 81.8
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 2.2e-33 146.0 95 72.6
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 1.1e-32 143.7 99 67.7
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 1.1e-32 143.7 99 67.7
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 1.1e-32 143.7 99 67.7
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 4.2e-32 141.7 122 63.1
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 7.2e-32 141.0 141 53.9
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 7.2e-32 141.0 99 66.7
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.6e-31 139.8 186 47.3
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 2.1e-31 139.4 87 78.2
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 6.1e-31 137.9 194 43.3
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 8.0e-31 137.5 89 75.3
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.8e-30 136.3 91 68.1
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 2.3e-30 136.0 133 54.1
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.7e-28 128.6 95 65.3
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.7e-28 128.6 95 65.3
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.7e-28 128.6 95 65.3
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.7e-28 128.6 95 65.3
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 3.7e-28 128.6 95 65.3
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 1.8e-27 126.3 85 75.3
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.3e-27 124.8 93 64.5
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.3e-27 124.8 93 64.5
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.3e-27 124.8 93 64.5
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.3e-27 124.8 93 64.5
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.3e-27 124.8 93 64.5
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 7.0e-27 124.4 82 75.6
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 1.6e-26 123.2 184 39.1
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.7e-25 119.8 93 63.4
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 3.8e-25 118.6 67 80.6
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.9e-24 116.3 94 58.5
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 7.2e-24 114.4 124 52.4
EL10As15g24119 Beta vulgaris HOM05D000806 ORTHO05D002320 1.6e-23 113.2 97 60.8
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 8.0e-23 110.9 66 72.7
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 1.0e-22 110.5 179 32.4
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 1.8e-22 109.8 93 60.2
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 4.0e-22 108.6 95 55.8
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 4.0e-22 108.6 189 39.2
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 9.8e-21 104.0 188 38.8
Lalb_Chr25g0282881 Lupinus albus HOM05D000806 ORTHO05D007429 1.3e-20 103.6 65 80.0
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.7e-20 103.2 61 73.8
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 1.4e-19 100.1 63 77.8
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 2.4e-19 99.4 100 52.0
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 4.1e-19 98.6 61 75.4
Sed0021403 Sechium edule HOM05D000806 ORTHO05D002324 4.1e-19 98.6 62 79.0
ATR1137G001 Amborella trichopoda HOM05D000806 ORTHO05D007429 2.3e-17 92.8 56 80.4
arahy.Tifrunner.gnm1.ann1.Y8HZNS Arachis hypogaea HOM05D000806 ORTHO05D002320 2.3e-17 92.8 63 77.8
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 2.3e-17 92.8 78 57.7
BolC9t58296H Brassica oleracea HOM05D000806 ORTHO05D007429 3.8e-17 92.0 65 73.8
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 3.8e-17 92.0 106 49.1
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 1.1e-16 90.5 175 33.1
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 3.3e-16 89.0 111 45.0
arahy.Tifrunner.gnm1.ann1.X4SEM1 Arachis hypogaea HOM05D000540 ORTHO05D000681 9.5e-16 87.4 62 75.8
Ah.10g027920 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.6e-15 85.5 54 75.9
Ah.10g028630 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.6e-15 85.5 54 75.9
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 3.6e-15 85.5 103 48.5
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 4.7e-15 85.1 108 46.3
TAR371G0631 Trochodendron aralioides HOM05D000806 ORTHO05D007429 4.7e-15 85.1 50 82.0
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 6.1e-15 84.7 87 55.2
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 6.1e-15 84.7 72 59.7
Nitab4.5_0010235g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.0e-14 82.4 79 55.7
BolSC29t60589H Brassica oleracea HOM05D000806 ORTHO05D007429 1.2e-13 80.5 64 59.4
EL10As15g24117 Beta vulgaris HOM05D000806 ORTHO05D007429 5.7e-13 78.2 53 67.9
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 9.8e-13 77.4 45 80.0
BolC9t55821H Brassica oleracea HOM05D000806 ORTHO05D007429 3.7e-12 75.5 48 68.8
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.8e-11 73.2 82 53.7
CAN.G1163.7 Capsicum annuum HOM05D000806 ORTHO05D007429 2.4e-11 72.8 58 67.2
FAN17G0466 Fragaria x ananassa HOM05D000806 ORTHO05D007429 2.4e-11 72.8 89 50.6
MD15G1388400 Malus domestica HOM05D000806 ORTHO05D007429 3.1e-11 72.4 50 72.0
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 5.4e-11 71.6 120 42.5
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 5.4e-11 71.6 48 60.4
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.7e-09 66.6 50 64.0
SEGI_16956 Sequoiadendron giganteum HOM05D000216 ORTHO05D001131 5.0e-09 65.1 50 68.0
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 1.1e-08 63.9 33 84.8
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 1.1e-08 63.9 33 84.8
Hund08021 Selenicereus undatus HOM05D002432 ORTHO05D000695 1.5e-08 63.5 70 54.3
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 3.0e-06 55.8 60 51.7
Migut.H00990 Erythranthe guttata HOM05D000806 ORTHO05D007429 4.0e-06 55.5 78 50.0


User provided reference genes

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