Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 0.0e+00 1638.6 996 100.0
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.2e-244 849.7 888 57.2
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.1e-242 843.2 888 59.0
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 6.9e-214 748.4 1013 48.2
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 3.3e-200 703.0 1021 47.8
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 1.4e-193 681.0 879 50.4
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 2.6e-192 676.8 1014 42.7
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 3.6e-186 656.4 875 47.9
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 6.3e-183 645.6 895 45.7
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 2.4e-182 643.7 1026 41.6
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 2.7e-181 640.2 1014 42.6
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 4.5e-181 639.4 1017 41.6
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 6.1e-178 629.0 876 45.7
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 2.4e-174 617.1 909 45.5
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 9.1e-174 615.1 1019 42.2
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 4.5e-173 612.8 906 43.9
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 1.3e-172 611.3 997 41.4
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 7.2e-171 605.5 874 44.6
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 2.1e-170 604.0 881 44.2
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 6.1e-170 602.4 882 43.5
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 8.0e-170 602.1 1033 40.9
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 4.0e-169 599.7 887 43.6
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 4.0e-169 599.7 868 45.0
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 1.5e-168 597.8 875 44.6
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 9.8e-168 595.1 1017 41.2
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 2.2e-167 594.0 885 45.4
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.1e-166 591.7 888 41.9
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 2.4e-166 590.5 877 44.4
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 3.1e-166 590.1 884 43.9
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 1.6e-165 587.8 1019 41.2
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 2.0e-165 587.4 960 40.9
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 3.5e-165 586.6 899 43.6
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 3.5e-165 586.6 1036 39.8
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 4.5e-165 586.3 884 44.0
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 7.8e-165 585.5 877 42.9
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 1.0e-164 585.1 886 42.4
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 2.9e-164 583.6 883 44.1
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 8.6e-164 582.0 1024 39.7
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 8.6e-164 582.0 889 43.3
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 8.6e-164 582.0 888 42.3
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 9.5e-163 578.6 867 42.7
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 6.1e-162 575.9 1015 40.5
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.8e-161 574.3 891 41.2
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 1.8e-161 574.3 1007 41.5
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 6.8e-161 572.4 866 43.0
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 8.9e-161 572.0 876 42.2
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 8.9e-161 572.0 876 42.2
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.6e-160 570.5 876 42.4
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 2.6e-160 570.5 901 41.4
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 2.2e-159 567.4 948 42.8
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 1.4e-158 564.7 867 43.0
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.4e-158 563.9 899 41.2
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 4.1e-158 563.1 906 42.5
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 5.4e-158 562.8 965 40.2
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 1.6e-157 561.2 887 42.6
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 3.5e-157 560.1 971 40.7
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.5e-157 560.1 1014 39.6
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 2.5e-155 553.9 1025 38.5
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 4.3e-155 553.1 909 39.5
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 5.6e-155 552.7 920 40.5
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 2.8e-154 550.4 884 41.0
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.4e-153 548.1 886 40.4
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 1.8e-153 547.7 916 40.0
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 4.0e-153 546.6 922 40.0
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 8.9e-153 545.4 1014 38.9
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 2.0e-152 544.3 885 42.0
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 2.6e-152 543.9 918 41.7
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 2.6e-152 543.9 879 40.5
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 2.9e-151 540.4 907 41.1
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 2.7e-149 533.9 829 42.2
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 3.5e-149 533.5 868 41.5
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 3.5e-149 533.5 983 38.4
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 3.5e-149 533.5 937 40.2
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 7.8e-149 532.3 913 40.5
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 2.3e-148 530.8 877 41.2
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 3.9e-148 530.0 967 39.2
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 1.1e-147 528.5 902 39.4
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 1.9e-147 527.7 887 40.4
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 2.5e-147 527.3 881 38.9
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.1e-146 524.2 975 36.8
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 1.1e-145 521.9 878 41.6
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 1.4e-145 521.5 1031 37.3
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 2.3e-145 520.8 890 40.2
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.1e-145 520.4 951 37.1
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 1.3e-143 515.0 875 40.8
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 2.2e-143 514.2 896 40.0
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.4e-142 510.8 824 40.2
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 4.6e-141 506.5 1045 36.5
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 1.9e-139 501.1 872 40.9
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 4.3e-139 500.0 859 41.0
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 2.8e-138 497.3 890 39.7
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 3.6e-138 496.9 864 37.4
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 3.6e-138 496.9 864 38.8
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 4.7e-138 496.5 779 42.0
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.1e-137 495.4 1029 39.2
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 2.4e-137 494.2 903 39.9
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 1.5e-136 491.5 1007 38.0
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 6.4e-135 486.1 1010 36.9
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 6.4e-135 486.1 1010 36.9
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 1.9e-134 484.6 912 38.7
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 2.4e-134 484.2 1010 37.9
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 2.1e-133 481.1 891 38.8
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 1.0e-132 478.8 602 44.4
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 5.1e-132 476.5 883 37.1
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.1e-131 475.3 876 38.0
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.4e-129 468.4 894 40.9
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 3.1e-129 467.2 483 50.5
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 1.7e-127 461.5 890 39.1
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 2.9e-127 460.7 741 44.9
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 8.7e-124 449.1 891 38.5
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 2.8e-122 444.1 914 38.4
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 3.1e-121 440.7 897 37.2
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 5.3e-121 439.9 906 37.4
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.9e-118 431.4 480 49.6
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 6.7e-116 422.9 477 47.6
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.1e-75 289.3 530 36.6
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 8.0e-69 266.5 480 36.9
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 4.5e-64 250.8 299 44.5
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 2.9e-63 248.1 585 30.6
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.4e-57 228.4 258 46.9
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 5.4e-57 227.3 434 38.9
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 9.1e-57 226.5 441 38.8
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 5.6e-54 217.2 349 42.1
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 3.6e-53 214.5 295 41.0
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 1.0e-52 213.0 1011 28.2
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 3.4e-43 181.4 171 53.8
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 4.6e-40 171.0 201 47.3
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 4.7e-29 134.4 550 30.4
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 8.1e-29 133.7 362 36.2
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 5.8e-27 127.5 398 32.7
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 5.6e-22 110.9 89 57.3
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.2e-21 109.8 511 29.0
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.8e-20 105.9 121 45.5
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 7.6e-19 100.5 485 30.1
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 8.4e-18 97.1 371 33.2
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 5.4e-17 94.4 88 51.1
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 3.9e-15 88.2 77 57.1
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.4e-12 79.7 151 36.4
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.4e-12 79.0 195 29.2
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 4.0e-12 78.2 151 36.4
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 4.4e-11 74.7 97 47.4
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 6.4e-10 70.9 88 43.2
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 3.2e-09 68.6 66 54.5
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 7.4e-06 57.4 110 37.3


User provided reference genes

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