Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0123s0014 Marchantia polymorpha HOM05D003688 ORTHO05D004338 0.0e+00 4413.6 2263 100.0
Pp3c3_24510 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 2008.8 2306 50.3
Pp3c3_37220 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 1991.9 2245 50.3
Pp3c10_20380 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 1904.0 2294 48.4
Pp3c8_2930 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 1847.8 2288 46.8
Pp3c8_2940 Physcomitrium patens HOM05D003688 ORTHO05D004338 0.0e+00 1805.0 2204 47.3
SMO361G0120 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 1758.0 2263 45.7
SMO361G0552 Selaginella moellendorffii HOM05D003688 ORTHO05D004338 0.0e+00 1745.3 2247 45.7
SEGI_36024 Sequoiadendron giganteum HOM05D003688 ORTHO05D004338 0.0e+00 1617.8 2259 44.5
ATR0559G162 Amborella trichopoda HOM05D003688 ORTHO05D004338 0.0e+00 1355.9 2249 38.8
Thecc.05G039500 Theobroma cacao HOM05D003688 ORTHO05D004338 0.0e+00 1247.6 2264 37.3
Cfa017377 Carpinus fangiana HOM05D003688 ORTHO05D004338 0.0e+00 1242.6 2271 37.4
TAR623G0018 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1238.8 2224 37.8
PSO151G0112 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1236.5 2262 36.9
PSO339G2612 Papaver somniferum HOM05D003688 ORTHO05D004338 0.0e+00 1219.1 2262 36.6
Actinidia11259 Actinidia chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1218.4 2261 36.2
QL07p048346 Quercus lobata HOM05D003688 ORTHO05D004338 0.0e+00 1216.8 2253 36.1
CSS0020509 Camellia sinensis var. sinensis HOM05D003688 ORTHO05D004338 0.0e+00 1216.1 2278 36.3
Solyc10g084760.3 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1212.6 2287 36.4
Haze_20793 Corylus avellana HOM05D003688 ORTHO05D004338 0.0e+00 1211.8 2260 36.2
arahy.Tifrunner.gnm1.ann1.N5BDHI Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1210.3 2248 36.3
Duzib106G0690 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1210.3 2261 36.4
arahy.Tifrunner.gnm1.ann1.VY3GX3 Arachis hypogaea HOM05D003688 ORTHO05D004338 0.0e+00 1209.5 2251 36.3
Prupe.6G255500 Prunus persica HOM05D003688 ORTHO05D004338 0.0e+00 1208.0 2257 36.7
TAR369G0630 Trochodendron aralioides HOM05D003688 ORTHO05D004338 0.0e+00 1207.6 2251 36.4
CiPaw.10G145700 Carya illinoinensis HOM05D003688 ORTHO05D004338 0.0e+00 1205.3 2284 36.6
CANSAT35G0056 Cannabis sativa HOM05D003688 ORTHO05D004338 0.0e+00 1202.6 2265 36.3
Dinv35601 Davidia involucrata HOM05D003688 ORTHO05D004338 0.0e+00 1199.9 2253 36.2
Cc06_g02620 Coffea canephora HOM05D003688 ORTHO05D004338 0.0e+00 1194.9 2256 36.1
Potri.006G085700 Populus trichocarpa HOM05D003688 ORTHO05D004338 0.0e+00 1193.7 2244 36.6
Solyc09g010830.4 Solanum lycopersicum HOM05D003688 ORTHO05D004338 0.0e+00 1191.8 2264 36.9
Sopen10g034210 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1190.3 2258 36.3
CAN.G324.6 Capsicum annuum HOM05D003688 ORTHO05D004338 0.0e+00 1189.9 2212 37.1
MD12G1142100 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1189.9 2269 36.5
ClCG10G021160 Citrullus lanatus HOM05D003688 ORTHO05D004338 0.0e+00 1189.5 2261 36.1
MELO3C009256.2 Cucumis melo HOM05D003688 ORTHO05D004338 0.0e+00 1189.1 2251 36.3
Duzib128G0151 Durio zibethinus HOM05D003688 ORTHO05D004338 0.0e+00 1186.8 2277 36.4
Sopen09g005560 Solanum pennellii HOM05D003688 ORTHO05D004338 0.0e+00 1186.0 2255 36.9
Aqoxy2G02133 Aquilegia oxysepala HOM05D003688 ORTHO05D004338 0.0e+00 1184.9 2264 35.8
Manes.09G091838 Manihot esculenta HOM05D003688 ORTHO05D004338 0.0e+00 1183.7 2259 36.4
Nn2g11106 Nelumbo nucifera HOM05D003688 ORTHO05D004338 0.0e+00 1183.7 2210 36.4
FAN14G0142 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1182.5 2299 35.7
FvH4_6g13660 Fragaria vesca HOM05D003688 ORTHO05D004338 0.0e+00 1182.2 2299 35.6
Rhsim05G0193000 Rhododendron simsii HOM05D003688 ORTHO05D004338 0.0e+00 1180.6 2258 36.0
RcHm_v2.0_Chr3g0466531 Rosa chinensis HOM05D003688 ORTHO05D004338 0.0e+00 1179.5 2297 36.0
TWI74G1144 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1179.1 2264 36.0
CsaV3_3G034880 Cucumis sativus L. HOM05D003688 ORTHO05D004338 0.0e+00 1178.7 2243 35.6
DCAR_009228 Daucus carota HOM05D003688 ORTHO05D004338 0.0e+00 1178.3 2271 35.8
Gohir.A09G155900 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1176.4 2262 36.9
PGR004G0645 Punica granatum HOM05D003688 ORTHO05D004338 0.0e+00 1175.6 2257 36.2
vmacro20159 Vaccinium macrocarpon HOM05D003688 ORTHO05D004338 0.0e+00 1171.8 2275 36.4
FAN09G1807 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1171.4 2299 35.4
SalBow4G0433 Salvia bowleyana HOM05D003688 ORTHO05D004338 0.0e+00 1166.4 2244 35.9
Gohir.D09G151400 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1164.8 2260 36.9
Sed0022373 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1164.1 2250 35.6
Migut.L01946 Erythranthe guttata HOM05D003688 ORTHO05D004338 0.0e+00 1162.5 2264 35.5
Gorai.006G172700 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1162.1 2254 36.5
Lalb_Chr01g0022521 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1161.7 2278 35.5
Lsat_1_v5_gn_8_81981 Lactuca sativa HOM05D003688 ORTHO05D004338 0.0e+00 1159.1 2226 36.2
Hma1.2p1_1899F.1_g306950 Hydrangea macrophylla HOM05D003688 ORTHO05D004338 0.0e+00 1158.7 2190 36.9
Lalb_Chr03g0042261 Lupinus albus HOM05D003688 ORTHO05D004338 0.0e+00 1156.7 2266 35.9
MSTRG.10258 Avicennia marina HOM05D003688 ORTHO05D004338 0.0e+00 1156.4 2251 36.1
HanXRQChr04g0125101 Helianthus annuus HOM05D003688 ORTHO05D004338 0.0e+00 1156.0 2245 35.5
MD04G1129300 Malus domestica HOM05D003688 ORTHO05D004338 0.0e+00 1151.3 2264 35.2
TWI77G0691 Tripterygium wilfordii HOM05D003688 ORTHO05D004338 0.0e+00 1150.2 2264 35.6
Gohir.A13G093100 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1147.1 2258 35.3
Gorai.001G249500 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1146.7 2253 35.5
Eucgr.A01266 Eucalyptus grandis HOM05D003688 ORTHO05D004338 0.0e+00 1142.1 2274 35.0
Gohir.D13G098600 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1139.8 2252 35.3
CBR_g34200 Chara braunii HOM05D003688 ORTHO05D004338 0.0e+00 1139.0 2644 33.0
Medtr7g061540 Medicago truncatula HOM05D003688 ORTHO05D004338 0.0e+00 1139.0 2257 35.8
Sabra06G0065100 Salix brachista HOM05D003688 ORTHO05D004338 0.0e+00 1137.5 2234 36.0
AUR62029194 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1133.2 2245 35.3
Phvul.008G106950 Phaseolus vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1133.2 2258 34.9
Lj3C967G6 Lonicera japonica HOM05D003688 ORTHO05D004338 0.0e+00 1127.5 2284 35.2
Glyma.18G181200 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1126.7 2260 34.5
THA.LOC104816269 Tarenaya hassleriana HOM05D003688 ORTHO05D004338 0.0e+00 1126.3 2250 35.6
Glyma.07G132300 Glycine max HOM05D003688 ORTHO05D004338 0.0e+00 1124.4 2254 34.9
AUR62014948 Chenopodium quinoa HOM05D003688 ORTHO05D004338 0.0e+00 1123.2 2290 34.7
FAN02G2694 Fragaria x ananassa HOM05D003688 ORTHO05D004338 0.0e+00 1122.5 2423 34.1
Psat3g140000 Pisum sativum HOM05D003688 ORTHO05D004338 0.0e+00 1121.7 2263 34.7
EL10Ac9g22598 Beta vulgaris HOM05D003688 ORTHO05D004338 0.0e+00 1120.1 2263 34.7
Ca_07551_v3 Cicer arietinum L. HOM05D003688 ORTHO05D004338 0.0e+00 1119.4 2268 34.7
ECA236G0128 Erigeron canadensis HOM05D003688 ORTHO05D004338 0.0e+00 1119.0 2248 35.3
SGA_v2.0_scaffold35G14236 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1117.4 2335 34.7
Ciclev10013610m.g Citrus clementina HOM05D003688 ORTHO05D004338 0.0e+00 1115.9 2249 35.0
Lj1g0008992 Lotus japonicus HOM05D003688 ORTHO05D004338 0.0e+00 1115.9 2270 34.7
SGA_v2.0_scaffold94G28599 Striga asiatica HOM05D003688 ORTHO05D004338 0.0e+00 1114.4 2345 34.5
Aa31LG1G22450 Aethionema arabicum HOM05D003688 ORTHO05D004338 0.0e+00 1103.2 2243 34.6
Thhalv10012411m.g Eutrema salsugineum HOM05D003688 ORTHO05D004338 0.0e+00 1100.1 2252 34.9
Peaxi162Scf00165g01216 Petunia axillaris HOM05D003688 ORTHO05D004338 0.0e+00 1100.1 2222 35.1
TPR.G23256 Trifolium pratense HOM05D003688 ORTHO05D004338 0.0e+00 1099.0 2243 34.7
Sed0016820 Sechium edule HOM05D003688 ORTHO05D004338 0.0e+00 1092.0 2256 34.4
Gohir.A01G222300 Gossypium hirsutum HOM05D003688 ORTHO05D004338 0.0e+00 1090.9 2252 34.8
HPP92_012595 Vanilla planifolia HOM05D003688 ORTHO05D004338 0.0e+00 1078.5 2258 34.3
Gorai.002G257600 Gossypium raimondii HOM05D003688 ORTHO05D004338 0.0e+00 1076.6 2249 34.8
AL6G11560 Arabidopsis lyrata HOM05D003688 ORTHO05D004338 0.0e+00 1075.1 2260 34.8
Carub.0006s0114 Capsella rubella HOM05D003688 ORTHO05D004338 1.5e-311 1074.7 2246 34.4
Gohir.D01G211800 Gossypium hirsutum HOM05D003688 ORTHO05D004338 1.5e-311 1073.5 2245 34.6
BcaC06g31982 Brassica carinata HOM05D003688 ORTHO05D004338 1.9e-310 1070.5 2260 34.2
BcaNung02121 Brassica carinata HOM05D003688 ORTHO05D004338 9.0e-310 1068.1 2269 34.5
Sp6g40140 Schrenkiella parvula HOM05D003688 ORTHO05D004338 2.0e-309 1067.0 2256 34.4
A10p33320 Brassica napus HOM05D003688 ORTHO05D004338 1.3e-308 1064.3 2269 34.4
AT5G02310 Arabidopsis thaliana HOM05D003688 ORTHO05D004338 2.9e-308 1063.1 2262 33.7
C02p00430 Brassica napus HOM05D003688 ORTHO05D004338 4.9e-308 1062.4 2264 34.4
BraA02t04715Z Brassica rapa HOM05D003688 ORTHO05D004338 4.9e-308 1062.4 2264 34.2
BolC2t06043H Brassica oleracea HOM05D003688 ORTHO05D004338 3.2e-307 1059.7 2264 34.3
BraA10t45363Z Brassica rapa HOM05D003688 ORTHO05D004338 7.1e-307 1058.5 2272 34.4
C09p74230 Brassica napus HOM05D003688 ORTHO05D004338 9.3e-307 1058.1 2269 34.3
Sc20g0004890 Simmondsia chinensis HOM05D003688 ORTHO05D004338 1.3e-305 1054.3 2260 34.1
HanXRQChr06g0177081 Helianthus annuus HOM05D003688 ORTHO05D004338 2.8e-303 1046.6 2238 33.8
CARHR211070 Cardamine hirsuta HOM05D003688 ORTHO05D004338 9.3e-299 1031.6 2255 33.3
BraA03t09453Z Brassica rapa HOM05D003688 ORTHO05D004338 4.3e-296 1022.7 2229 34.3
A03p00630 Brassica napus HOM05D003688 ORTHO05D004338 9.6e-296 1021.5 2229 34.3
HanXRQChr06g0179281 Helianthus annuus HOM05D003688 ORTHO05D004338 1.6e-295 1020.8 2268 33.7
BolC3t12653H Brassica oleracea HOM05D003688 ORTHO05D004338 6.9e-294 1015.4 2242 34.3
C03p00900 Brassica napus HOM05D003688 ORTHO05D004338 2.6e-293 1013.4 2242 34.3
BcaB01g06158 Brassica carinata HOM05D003688 ORTHO05D004338 1.6e-290 1004.2 2241 34.0
FAN05G2232 Fragaria x ananassa HOM05D003688 ORTHO05D004338 2.0e-277 960.7 2232 32.8
AUR62029189 Chenopodium quinoa HOM05D003688 ORTHO05D004338 6.1e-258 896.0 2265 31.0
Nitab4.5_0000216g0310 Nicotiana tabacum HOM05D003688 ORTHO05D004338 5.9e-237 826.2 1911 33.7
Atru.chr8.1978 Acer truncatum HOM05D003688 ORTHO05D004338 1.4e-233 815.1 1372 37.8
Zm00001eb124390 Zea mays HOM05D003688 ORTHO05D004338 4.0e-233 813.5 1513 37.7
MBI14_g20100_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 5.2e-217 760.0 1367 36.7
AUR62014950 Chenopodium quinoa HOM05D003688 ORTHO05D004338 4.6e-213 746.9 2237 28.6
GSVIVG01034169001 Vitis vinifera HOM05D003688 ORTHO05D004338 9.5e-211 739.2 1400 37.1
Nitab4.5_0000202g0100 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.7e-204 718.4 1806 32.2
MBI14_g36919_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 3.6e-202 710.7 1322 37.1
Peaxi162Scf00094g01313 Petunia axillaris HOM05D003688 ORTHO05D004338 2.8e-194 684.5 1329 36.7
Nitab4.5_0003845g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 1.3e-186 659.1 1356 35.7
CDE04G3033 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 9.6e-179 632.9 1837 30.1
Nitab4.5_0006677g0040 Nicotiana tabacum HOM05D003688 ORTHO05D004338 7.1e-174 616.7 1339 34.1
BcaNung06990 Brassica carinata HOM05D003688 ORTHO05D004338 2.1e-173 615.1 1896 30.1
Oeu036138.2 Olea europaea HOM05D003688 ORTHO05D004338 2.3e-156 558.5 1300 32.1
AUR62029193 Chenopodium quinoa HOM05D003688 ORTHO05D004338 8.8e-156 556.6 2114 26.1
Cpa.g.sc228.13 Carica papaya HOM05D003688 ORTHO05D004338 2.4e-153 548.5 920 37.1
BcaC03g18436 Brassica carinata HOM05D003688 ORTHO05D004338 7.7e-152 543.5 1434 32.1
Nitab4.5_0003845g0020 Nicotiana tabacum HOM05D003688 ORTHO05D004338 2.7e-149 535.0 922 38.2
Nitab4.5_0006677g0030 Nicotiana tabacum HOM05D003688 ORTHO05D004338 3.9e-148 531.2 931 38.0
VMungo1383G2756 Vigna mungo HOM05D003688 ORTHO05D004338 4.1e-145 521.2 916 35.7
Os01g0148050 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 5.0e-135 487.6 1032 35.8
Os01g0148000 Oryza sativa ssp. japonica HOM05D003688 ORTHO05D004338 2.4e-121 442.2 880 34.1
PRCOL_00001936 Prasinoderma coloniale HOM05D003688 ORTHO05D004338 6.6e-119 434.1 2343 25.4
Peaxi162Scf00094g00138 Petunia axillaris HOM05D003688 ORTHO05D004338 5.2e-116 424.5 917 32.8
Cpa.g.sc228.14 Carica papaya HOM05D003688 ORTHO05D004338 1.2e-104 386.7 946 33.4
GSVIVG01034167001 Vitis vinifera HOM05D003688 ORTHO05D004338 2.1e-93 349.4 389 46.3
CAN.G326.3 Capsicum annuum HOM05D003688 ORTHO05D004338 6.8e-92 344.4 625 36.8
Atru.chr8.1976 Acer truncatum HOM05D003688 ORTHO05D004338 1.3e-87 330.1 494 43.5
BcaC03g18435 Brassica carinata HOM05D003688 ORTHO05D004338 1.9e-86 326.2 1311 27.6
BcaB01g06223 Brassica carinata HOM05D003688 ORTHO05D004338 1.3e-79 303.5 382 41.9
Oeu033326.1 Olea europaea HOM05D003688 ORTHO05D004338 8.7e-79 300.8 311 48.2
unitig_0.g702 Utricularia gibba HOM05D003688 ORTHO05D004338 5.3e-76 291.6 406 41.9
Oeu036137.1 Olea europaea HOM05D003688 ORTHO05D004338 4.8e-69 268.5 312 45.5
Pp3c22_8160 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.5e-67 263.5 239 54.8
Mapoly0028s0055 Marchantia polymorpha HOM05D003688 ORTHO05D004338 2.6e-67 262.7 2237 21.6
CDE04G0526 Ceratophyllum demersum HOM05D003688 ORTHO05D004338 1.2e-64 253.8 314 39.5
AagrBONN_evm.TU.Sc2ySwM_344.5255 Anthoceros agrestis HOM05D003688 ORTHO05D004338 8.4e-58 231.1 2220 21.4
CAN.G326.2 Capsicum annuum HOM05D003688 ORTHO05D004338 4.1e-52 212.2 400 36.5
Oeu051935.1 Olea europaea HOM05D003688 ORTHO05D004338 1.0e-47 197.6 316 39.9
Haze_03516 Corylus avellana HOM05D003688 ORTHO05D004338 3.0e-47 196.1 371 32.3
Pp3c2_29090 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.4e-44 187.2 2276 20.7
Pp3c7_22570 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.7e-42 180.3 1011 23.5
Oeu051936.1 Olea europaea HOM05D003688 ORTHO05D004338 5.7e-38 165.2 506 28.5
Psat2g029320 Pisum sativum HOM05D003688 ORTHO05D017064 3.8e-34 152.5 189 44.4
Pp3c17_2850 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.1e-33 151.0 1098 22.3
Pp3c9_4700 Physcomitrium patens HOM05D003688 ORTHO05D004338 1.3e-29 137.5 1042 21.7
Pp3c15_3560 Physcomitrium patens HOM05D003688 ORTHO05D004338 8.2e-29 134.8 1063 21.4
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 2.0e-27 130.2 163 39.3
MCO04G508 Micromonas commoda HOM05D003688 ORTHO05D004338 2.5e-25 123.2 189 41.8
SHI12676 Sapria himalayana HOM05D003688 ORTHO05D004338 1.6e-24 120.6 276 31.5
CAN.G325.1 Capsicum annuum HOM05D003688 ORTHO05D004338 6.7e-23 115.2 169 42.0
unitig_0.g701 Utricularia gibba HOM05D003688 ORTHO05D004338 3.7e-21 109.4 80 68.8
Atru.chr8.1977 Acer truncatum HOM05D003688 ORTHO05D004338 1.1e-20 107.8 126 44.4
Cre02.g089237 Chlamydomonas reinhardtii HOM05D003688 ORTHO05D004338 1.3e-18 100.9 82 50.0
GSVIVG01023054001 Vitis vinifera HOM05D003688 ORTHO05D004338 6.1e-16 92.0 76 53.9
SHI12675 Sapria himalayana HOM05D003688 ORTHO05D004338 8.0e-16 91.7 257 33.1
Cfa025161 Carpinus fangiana HOM05D003688 ORTHO05D004338 2.3e-15 90.1 288 28.1
MBI19_g16672_MAGBIO Magnolia biondii HOM05D003688 ORTHO05D004338 4.0e-15 89.4 134 38.8
Oeu039697.1 Olea europaea HOM05D003688 ORTHO05D004338 2.0e-14 87.0 114 41.2
Sc20g0004930 Simmondsia chinensis HOM05D003688 ORTHO05D004338 2.9e-10 73.2 45 71.1
Sc20g0004940 Simmondsia chinensis HOM05D003688 ORTHO05D004338 4.4e-06 59.3 36 75.0
Lsat_1_v5_gn_4_33481 Lactuca sativa HOM05D003688 ORTHO05D004338 9.8e-06 58.2 164 28.7


User provided reference genes

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