Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 0.0e+00 1303.9 716 100.0
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 4.2e-88 330.1 734 38.7
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 3.5e-58 230.7 549 35.3
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 2.9e-52 211.1 492 33.7
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 4.4e-45 187.2 331 39.6
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 9.9e-45 186.0 498 31.5
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 2.9e-44 184.5 499 31.1
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 1.1e-43 182.6 515 29.9
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 3.2e-43 181.0 509 32.0
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 5.4e-43 180.3 302 40.4
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 9.2e-43 179.5 517 29.8
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 9.2e-43 179.5 306 37.9
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 1.6e-42 178.7 337 34.7
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 2.1e-42 178.3 365 37.3
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 2.7e-42 177.9 334 37.1
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 4.6e-42 177.2 355 36.9
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 6.0e-42 176.8 413 32.7
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 7.8e-42 176.4 349 37.5
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 1.0e-41 176.0 333 36.0
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 1.0e-41 176.0 500 29.6
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 1.3e-41 175.6 333 36.0
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 2.3e-41 174.9 304 36.5
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 3.0e-41 174.5 352 36.1
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 3.0e-41 174.5 506 29.4
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 3.9e-41 174.1 303 40.6
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 6.6e-41 173.3 339 37.5
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 6.6e-41 173.3 428 35.7
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 8.6e-41 172.9 318 39.0
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 1.9e-40 171.8 360 35.8
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 3.3e-40 171.0 353 36.3
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 4.3e-40 170.6 462 31.6
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 5.6e-40 170.2 329 36.8
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 5.6e-40 170.2 522 31.2
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 5.6e-40 170.2 434 32.9
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 1.2e-39 169.1 337 36.2
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 1.2e-39 169.1 412 34.5
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 1.6e-39 168.7 537 29.1
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 1.6e-39 168.7 301 35.5
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 2.1e-39 168.3 536 30.2
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 2.1e-39 168.3 328 35.7
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 2.8e-39 167.9 499 30.3
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 4.7e-39 167.2 304 38.2
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 8.1e-39 166.4 438 33.3
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 1.1e-38 166.0 353 36.0
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 1.1e-38 166.0 315 35.6
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 1.1e-38 166.0 379 33.2
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 1.1e-38 166.0 345 35.4
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 1.1e-38 166.0 378 34.4
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 1.8e-38 165.2 303 38.0
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 1.8e-38 165.2 498 28.3
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 1.8e-38 165.2 498 28.3
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 2.3e-38 164.9 301 35.9
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 3.1e-38 164.5 363 33.3
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 4.0e-38 164.1 363 32.5
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 4.0e-38 164.1 361 32.7
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 8.9e-38 162.9 433 33.3
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 1.2e-37 162.5 555 28.5
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 1.2e-37 162.5 414 33.1
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 1.2e-37 162.5 400 33.8
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 1.2e-37 162.5 500 29.4
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 1.2e-37 162.5 332 35.5
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 1.2e-37 162.5 341 36.1
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 2.0e-37 161.8 407 34.2
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 4.4e-37 160.6 416 32.5
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 4.4e-37 160.6 416 32.5
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 4.4e-37 160.6 423 32.9
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 7.6e-37 159.8 537 28.9
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 2.9e-36 157.9 443 30.7
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 2.9e-36 157.9 446 31.8
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 3.8e-36 157.5 374 32.6
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 6.4e-36 156.8 409 32.8
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 1.9e-35 155.2 358 34.4
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 2.4e-35 154.8 277 38.6
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 3.2e-35 154.5 407 32.9
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 4.1e-35 154.1 302 35.1
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 9.2e-35 152.9 510 29.8
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 4.6e-34 150.6 524 28.6
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 6.0e-34 150.2 532 28.8
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 1.0e-33 149.4 535 27.1
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 3.9e-33 147.5 315 34.3
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 6.6e-33 146.7 477 30.4
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 1.5e-32 145.6 352 31.8
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 9.6e-32 142.9 474 30.8
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 9.6e-32 142.9 292 34.9
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 1.2e-31 142.5 400 31.5
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 3.6e-31 141.0 371 31.8
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 1.1e-27 129.4 300 32.7
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 1.9e-27 128.6 361 29.6
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 3.5e-26 124.4 280 31.1
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 1.5e-24 119.0 304 31.2
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 2.1e-23 115.2 214 38.8
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 5.8e-21 107.1 313 29.7
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 2.9e-20 104.8 128 42.2
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 4.2e-19 100.9 174 37.4
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 1.3e-15 89.4 146 38.4
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 8.1e-15 86.7 104 50.0
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.5e-13 82.4 131 39.7
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 2.0e-13 82.0 241 27.8
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.6e-13 81.6 131 39.7
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 6.4e-12 77.0 315 24.8
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 1.4e-11 75.9 188 32.4
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 7.1e-11 73.6 108 41.7
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 2.3e-09 68.6 92 42.4
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.9e-08 65.5 61 49.2
Sabra04G0054400 Salix brachista HOM05D005384 ORTHO05D006477 3.3e-08 64.7 346 27.7
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 5.6e-08 63.9 163 30.1
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 9.6e-08 63.2 98 42.9
GSVIVG01013204001 Vitis vinifera HOM05D005384 ORTHO05D006477 9.6e-08 63.2 229 28.8
ECA246G0264 Erigeron canadensis HOM05D005384 ORTHO05D006477 1.3e-07 62.8 125 37.6
BcaNung06989 Brassica carinata HOM05D005384 ORTHO05D006477 2.1e-07 62.0 125 36.0
C08p29480 Brassica napus HOM05D005384 ORTHO05D006477 2.1e-07 62.0 125 36.0
BolC8t50551H Brassica oleracea HOM05D005384 ORTHO05D006477 2.1e-07 62.0 125 36.0
Medtr8g070990 Medicago truncatula HOM05D005384 ORTHO05D006477 2.8e-07 61.6 148 32.4
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 2.8e-07 61.6 345 27.2
AL5G35270 Arabidopsis lyrata HOM05D005384 ORTHO05D006477 3.7e-07 61.2 244 27.9
BraA09t40184Z Brassica rapa HOM05D005384 ORTHO05D006477 3.7e-07 61.2 125 36.0
Haze_14319 Corylus avellana HOM05D005384 ORTHO05D006477 3.7e-07 61.2 122 37.7
Dinv07851 Davidia involucrata HOM05D005384 ORTHO05D006477 3.7e-07 61.2 228 29.4
QL02p064091 Quercus lobata HOM05D005384 ORTHO05D006477 3.7e-07 61.2 122 36.9
arahy.Tifrunner.gnm1.ann1.EB4ABC Arachis hypogaea HOM05D005384 ORTHO05D006477 4.8e-07 60.8 130 36.9
arahy.Tifrunner.gnm1.ann1.R6E3N5 Arachis hypogaea HOM05D005384 ORTHO05D006477 4.8e-07 60.8 130 36.9
DCAR_016228 Daucus carota HOM05D005384 ORTHO05D006477 4.8e-07 60.8 123 37.4
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 4.8e-07 60.8 346 27.7
HanXRQChr17g0535751 Helianthus annuus HOM05D005384 ORTHO05D006477 6.2e-07 60.5 138 34.8
Lsat_1_v5_gn_3_16520 Lactuca sativa HOM05D005384 ORTHO05D006477 6.2e-07 60.5 122 36.9
Lalb_Chr05g0228951 Lupinus albus HOM05D005384 ORTHO05D006477 6.2e-07 60.5 121 37.2
Phvul.003G273500 Phaseolus vulgaris HOM05D005384 ORTHO05D006477 6.2e-07 60.5 148 31.8
Sp5g08170 Schrenkiella parvula HOM05D005384 ORTHO05D006477 6.2e-07 60.5 163 31.9
A09p47220 Brassica napus HOM05D005384 ORTHO05D006477 8.2e-07 60.1 125 35.2
Lalb_Chr16g0391981 Lupinus albus HOM05D005384 ORTHO05D006477 8.2e-07 60.1 121 37.2
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 1.4e-06 59.3 106 40.6
ATR0743G115 Amborella trichopoda HOM05D005384 ORTHO05D006477 1.8e-06 58.9 107 41.1
Thhalv10010093m.g Eutrema salsugineum HOM05D005384 ORTHO05D006477 1.8e-06 58.9 130 35.4
Carub.0005s2082 Capsella rubella HOM05D005384 ORTHO05D006477 2.4e-06 58.5 130 35.4
CARHR164150 Cardamine hirsuta HOM05D005384 ORTHO05D006477 2.4e-06 58.5 237 27.8
Glyma.08G266700 Glycine max HOM05D005384 ORTHO05D006477 2.4e-06 58.5 121 35.5
Mapoly0005s0121 Marchantia polymorpha HOM05D005384 ORTHO05D006477 2.4e-06 58.5 116 37.1
AT3G54230 Arabidopsis thaliana HOM05D005384 ORTHO05D006477 3.1e-06 58.2 130 35.4
FAN01G0265 Fragaria x ananassa HOM05D005384 ORTHO05D006477 3.1e-06 58.2 215 28.8
Lj4g0003244 Lotus japonicus HOM05D005384 ORTHO05D006477 3.1e-06 58.2 115 34.8
Manes.02G081900 Manihot esculenta HOM05D005384 ORTHO05D006477 3.1e-06 58.2 351 25.6
Hund21526 Selenicereus undatus HOM05D005384 ORTHO05D006477 3.1e-06 58.2 207 30.0
TPR.G28963 Trifolium pratense HOM05D005384 ORTHO05D006477 3.1e-06 58.2 121 33.9
CSS0000239 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 4.0e-06 57.8 130 34.6
CSS0043592 Camellia sinensis var. sinensis HOM05D005384 ORTHO05D006477 4.0e-06 57.8 130 34.6
FAN06G1991 Fragaria x ananassa HOM05D005384 ORTHO05D006477 4.0e-06 57.8 215 28.8
RcHm_v2.0_Chr1g0329501 Rosa chinensis HOM05D005384 ORTHO05D006477 4.0e-06 57.8 228 27.2
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 6.9e-06 57.0 123 37.4
Ciclev10010959m.g Citrus clementina HOM05D005384 ORTHO05D006477 6.9e-06 57.0 122 36.1
Cc04_g13050 Coffea canephora HOM05D005384 ORTHO05D006477 6.9e-06 57.0 131 33.6
Prupe.2G049800 Prunus persica HOM05D005384 ORTHO05D006477 6.9e-06 57.0 220 30.0
SEGI_21581 Sequoiadendron giganteum HOM05D005384 ORTHO05D006477 6.9e-06 57.0 132 34.1
THA.LOC104801042 Tarenaya hassleriana HOM05D005384 ORTHO05D006477 6.9e-06 57.0 126 34.1
CiPaw.04G049200 Carya illinoinensis HOM05D005384 ORTHO05D006477 9.0e-06 56.6 343 26.8
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 9.0e-06 56.6 126 37.3
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 9.0e-06 56.6 126 37.3
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 9.0e-06 56.6 186 31.7
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 9.0e-06 56.6 119 35.3


User provided reference genes

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