Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 0.0e+00 1173.7 576 100.0
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 9.0e-307 1056.2 553 91.3
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 6.0e-303 1043.5 557 88.9
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 1.0e-302 1042.7 552 89.9
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 1.0e-302 1042.7 552 89.9
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-302 1042.7 552 90.4
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-302 1042.7 552 90.4
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 1.9e-301 1038.5 551 90.0
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 2.5e-301 1038.1 552 89.7
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 2.5e-301 1038.1 552 89.7
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 2.5e-301 1038.1 552 89.9
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 2.5e-301 1038.1 554 89.4
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 2.5e-301 1038.1 554 89.2
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 3.3e-301 1037.7 552 89.7
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 4.3e-301 1037.3 552 89.7
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 4.3e-301 1037.3 554 89.0
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 4.3e-301 1037.3 554 89.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 4.3e-301 1037.3 550 89.5
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 5.6e-301 1036.9 551 89.1
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 5.6e-301 1036.9 551 89.7
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 7.4e-301 1036.6 556 88.7
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 7.4e-301 1036.6 556 88.7
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 9.6e-301 1036.2 555 88.6
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 1.3e-300 1035.8 554 88.8
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 1.3e-300 1035.8 554 89.2
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 1.6e-300 1035.4 550 90.0
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 2.1e-300 1035.0 554 88.6
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 2.1e-300 1035.0 555 89.0
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 2.1e-300 1035.0 552 89.3
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 2.8e-300 1034.6 551 89.1
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 2.8e-300 1034.6 554 89.2
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 3.7e-300 1034.2 557 88.3
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 4.8e-300 1033.9 552 88.9
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.8e-300 1033.9 552 89.3
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 8.1e-300 1033.1 555 88.5
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 1.1e-299 1032.7 552 88.8
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-299 1032.7 553 88.6
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 1.1e-299 1032.7 555 88.1
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.4e-299 1032.3 555 88.8
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 1.8e-299 1031.9 551 89.1
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.8e-299 1031.9 555 88.5
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 2.4e-299 1031.6 552 89.3
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 4.0e-299 1030.8 552 88.4
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 4.0e-299 1030.8 555 88.1
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 4.0e-299 1030.8 552 88.8
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 6.9e-299 1030.0 557 88.3
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 6.9e-299 1030.0 554 88.8
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 6.9e-299 1030.0 556 88.1
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 6.9e-299 1030.0 554 88.4
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 6.9e-299 1030.0 554 88.3
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 6.9e-299 1030.0 555 88.1
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 6.9e-299 1030.0 553 89.0
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 9.0e-299 1029.6 552 88.9
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 9.0e-299 1029.6 556 88.7
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 9.0e-299 1029.6 554 88.8
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 1.2e-298 1029.2 555 88.3
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 1.5e-298 1028.9 552 88.6
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 1.5e-298 1028.9 551 88.9
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 2.0e-298 1028.5 552 88.6
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 3.4e-298 1027.7 554 88.1
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 5.8e-298 1026.9 555 87.6
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 9.9e-298 1026.2 577 85.6
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 1.7e-297 1025.4 555 87.4
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 2.2e-297 1025.0 552 88.0
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 2.9e-297 1024.6 555 87.2
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 4.9e-297 1023.8 556 87.4
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 4.9e-297 1023.8 553 88.4
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 1.4e-296 1022.3 552 87.5
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.4e-296 1022.3 555 87.9
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 2.4e-296 1021.5 539 90.2
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 9.3e-296 1019.6 584 84.6
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 2.1e-295 1018.5 555 86.5
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.1e-295 1018.5 556 86.9
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 2.7e-295 1018.1 555 87.0
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 2.7e-295 1018.1 556 87.1
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 4.6e-295 1017.3 556 87.1
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 4.6e-295 1017.3 552 87.3
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 4.6e-295 1017.3 556 87.1
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 4.6e-295 1017.3 556 86.9
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 6.0e-295 1016.9 552 87.5
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 6.0e-295 1016.9 556 86.9
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 6.0e-295 1016.9 556 86.9
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 7.9e-295 1016.5 552 87.3
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 7.9e-295 1016.5 552 87.5
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 2.3e-294 1015.0 554 87.5
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 3.0e-294 1014.6 556 86.7
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 3.0e-294 1014.6 556 86.7
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 1.3e-292 1009.2 591 82.9
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 1.4e-291 1005.7 555 86.5
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 7.6e-290 1000.0 606 80.9
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 4.9e-289 997.3 585 82.2
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 6.5e-289 996.9 519 90.6
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 2.5e-285 984.9 563 84.5
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.7e-276 955.7 555 83.4
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 1.2e-274 949.5 520 86.5
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 3.2e-272 941.4 485 91.3
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 3.1e-267 924.9 494 89.1
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 8.8e-262 906.7 538 80.7
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 2.2e-257 892.1 453 91.8
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 2.8e-252 875.2 556 78.1
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.6e-250 869.4 546 77.1
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.6e-231 806.2 503 78.7
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.2e-228 795.8 556 71.8
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 7.8e-226 787.3 405 90.4
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 8.0e-223 777.3 558 71.3
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.2e-221 773.5 555 71.2
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 2.6e-221 772.3 519 74.8
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 4.4e-221 771.5 419 88.3
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 6.4e-220 767.7 519 74.4
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 8.3e-220 767.3 535 72.0
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 6.8e-214 747.7 556 68.3
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 3.9e-209 731.9 551 67.3
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 7.6e-205 717.6 554 66.6
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 3.0e-201 705.7 383 87.2
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 4.9e-188 661.8 502 68.1
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.4e-182 643.7 328 90.5
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 8.7e-169 597.8 311 91.0
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 8.5e-156 554.7 507 59.6
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 7.0e-142 508.4 265 88.3
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.0e-140 504.6 547 52.8
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.9e-140 503.1 460 59.6
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 7.7e-125 451.8 497 51.9
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 6.6e-124 448.7 294 75.9
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 9.5e-123 444.9 504 50.6
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 4.0e-121 439.5 293 73.4
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 5.2e-121 439.1 248 87.5
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 9.8e-120 434.9 385 59.7
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 2.7e-117 426.8 323 67.8
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.4e-113 414.5 554 45.5
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 9.2e-110 401.7 350 59.7
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.9e-107 394.0 227 86.8
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 2.5e-107 393.7 196 93.9
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-95 354.4 245 73.5
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.9e-95 353.6 212 81.6
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 1.7e-92 344.4 266 64.3
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.3e-92 344.0 179 88.8
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.0e-89 333.2 167 91.6
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-83 315.1 292 60.6
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 5.6e-83 312.8 160 90.0
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 9.0e-81 305.4 154 88.3
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 7.6e-80 302.4 155 90.3
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 4.2e-78 296.6 313 55.0
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 6.7e-68 262.7 152 84.2
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 1.1e-62 245.4 151 82.1
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 4.2e-62 243.4 148 81.8
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 6.7e-52 209.5 152 70.4
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 2.5e-51 207.6 122 83.6
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 2.4e-49 201.1 284 45.1
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 4.6e-45 186.8 105 82.9
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 6.3e-42 176.4 161 55.9
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 2.0e-40 171.4 113 74.3
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 2.6e-32 144.4 98 74.5
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-26 125.6 75 82.7
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 1.4e-25 122.1 73 82.2
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 3.5e-24 117.5 134 52.2
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 1.6e-21 108.6 55 92.7
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 9.8e-19 99.4 73 69.9
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 1.3e-18 99.0 58 81.0
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 7.0e-17 93.2 75 65.3
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 1.0e-15 89.4 63 71.4
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 8.5e-15 86.3 95 51.6
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-14 85.9 44 84.1
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.5e-14 85.5 88 60.2
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 2.1e-13 81.6 59 67.8
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 5.7e-11 73.6 49 67.3
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 3.3e-06 57.8 57 57.9
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 5.6e-06 57.0 52 61.5
AagrBONN_evm.TU.Sc2ySwM_362.31 Anthoceros agrestis HOM05D011518 ORTHO05D076736 9.5e-06 56.2 31 80.6


User provided reference genes

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