Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0090s0037 Marchantia polymorpha HOM05D004569 ORTHO05D005333 3.1e-62 241.9 149 100.0
AagrBONN_evm.TU.Sc2ySwM_228.788 Anthoceros agrestis HOM05D004569 ORTHO05D005333 2.4e-30 136.0 120 56.7
Pp3c21_14050 Physcomitrium patens HOM05D004569 ORTHO05D005333 7.8e-29 131.0 123 54.5
Medtr7g034585 Medicago truncatula HOM05D004569 ORTHO05D005333 1.6e-26 123.2 124 46.8
TAR365G0299 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.0e-24 116.3 124 44.4
CANSAT78G0168 Cannabis sativa HOM05D004569 ORTHO05D005333 2.6e-24 115.9 122 47.5
Lj6g0017152 Lotus japonicus HOM05D004569 ORTHO05D005333 2.6e-24 115.9 124 46.0
PSO832G4509 Papaver somniferum HOM05D004569 ORTHO05D005333 4.4e-24 115.2 123 45.5
PSO210G1425 Papaver somniferum HOM05D004569 ORTHO05D005333 7.6e-24 114.4 122 45.9
Oeu058961.1 Olea europaea HOM05D004569 ORTHO05D005333 1.3e-23 113.6 124 46.0
arahy.Tifrunner.gnm1.ann1.NDW3GA Arachis hypogaea HOM05D004569 ORTHO05D005333 1.7e-23 113.2 123 45.5
arahy.Tifrunner.gnm1.ann1.SFA2KC Arachis hypogaea HOM05D004569 ORTHO05D005333 1.7e-23 113.2 123 45.5
Lj5g0008299 Lotus japonicus HOM05D004569 ORTHO05D005333 4.9e-23 111.7 124 45.2
Lalb_Chr06g0161741 Lupinus albus HOM05D004569 ORTHO05D005333 4.9e-23 111.7 124 46.0
Dinv07545 Davidia involucrata HOM05D004569 ORTHO05D005333 6.4e-23 111.3 124 46.0
ATR0829G086 Amborella trichopoda HOM05D004569 ORTHO05D005333 8.4e-23 110.9 117 47.0
CiPaw.01G195800 Carya illinoinensis HOM05D004569 ORTHO05D005333 8.4e-23 110.9 122 45.9
Glyma.18G039600 Glycine max HOM05D004569 ORTHO05D005333 1.1e-22 110.5 121 47.1
Phvul.001G230900 Phaseolus vulgaris HOM05D004569 ORTHO05D005333 3.2e-22 109.0 123 44.7
ClCG06G006470 Citrullus lanatus HOM05D004569 ORTHO05D005333 4.2e-22 108.6 123 47.2
Glyma.11G217000 Glycine max HOM05D004569 ORTHO05D005333 5.4e-22 108.2 121 46.3
ECA246G0155 Erigeron canadensis HOM05D004569 ORTHO05D005333 7.1e-22 107.8 124 44.4
Nn1g01867 Nelumbo nucifera HOM05D004569 ORTHO05D005333 7.1e-22 107.8 122 41.0
MBI18_g09782_MAGBIO Magnolia biondii HOM05D004569 ORTHO05D005333 9.3e-22 107.5 122 42.6
SMO343G0078 Selaginella moellendorffii HOM05D004569 ORTHO05D005333 9.3e-22 107.5 133 45.1
Cfa006984 Carpinus fangiana HOM05D004569 ORTHO05D005333 2.1e-21 106.3 122 46.7
Zm00001eb076270 Zea mays HOM05D004569 ORTHO05D005333 2.1e-21 106.3 133 40.6
Gohir.A02G034100 Gossypium hirsutum HOM05D004569 ORTHO05D005333 4.6e-21 105.1 122 45.1
HanXRQChr05g0158611 Helianthus annuus HOM05D004569 ORTHO05D005333 6.0e-21 104.8 123 43.9
Psat3g163880 Pisum sativum HOM05D004569 ORTHO05D005333 6.0e-21 104.8 120 40.8
unitig_748.g7305 Utricularia gibba HOM05D004569 ORTHO05D005333 6.0e-21 104.8 120 45.8
Zm00001eb076290 Zea mays HOM05D004569 ORTHO05D005333 6.0e-21 104.8 133 39.8
Zm00001eb310390 Zea mays HOM05D004569 ORTHO05D005333 6.0e-21 104.8 133 39.8
Ciclev10006087m.g Citrus clementina HOM05D004569 ORTHO05D005333 7.8e-21 104.4 119 44.5
THA.LOC104827037 Tarenaya hassleriana HOM05D004569 ORTHO05D005333 1.0e-20 104.0 122 47.5
Gohir.D02G040900 Gossypium hirsutum HOM05D004569 ORTHO05D005333 1.3e-20 103.6 122 45.1
PGR004G1818 Punica granatum HOM05D004569 ORTHO05D005333 1.7e-20 103.2 120 43.3
Zm00001eb076250 Zea mays HOM05D004569 ORTHO05D005333 1.7e-20 103.2 133 39.1
Aqoxy5G00407 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 3.0e-20 102.4 119 41.2
Haze_03750 Corylus avellana HOM05D004569 ORTHO05D005333 3.0e-20 102.4 122 45.9
CSS0021073 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.9e-20 102.1 119 44.5
Gorai.005G045300 Gossypium raimondii HOM05D004569 ORTHO05D005333 3.9e-20 102.1 120 44.2
Hund09493 Selenicereus undatus HOM05D004569 ORTHO05D005333 3.9e-20 102.1 122 43.4
Duzib052G0452 Durio zibethinus HOM05D004569 ORTHO05D005333 5.1e-20 101.7 122 43.4
Potri.005G067600 Populus trichocarpa HOM05D004569 ORTHO05D005333 5.1e-20 101.7 122 41.0
PGR031G3247 Punica granatum HOM05D004569 ORTHO05D005333 5.1e-20 101.7 119 43.7
HanXRQChr06g0173001 Helianthus annuus HOM05D004569 ORTHO05D005333 6.6e-20 101.3 123 43.1
Sed0021164 Sechium edule HOM05D004569 ORTHO05D005333 6.6e-20 101.3 121 43.8
Thecc.04G238000 Theobroma cacao HOM05D004569 ORTHO05D005333 6.6e-20 101.3 122 43.4
Eucgr.H03416 Eucalyptus grandis HOM05D004569 ORTHO05D005333 8.7e-20 100.9 121 43.0
SGA_v2.0_scaffold353G49718 Striga asiatica HOM05D004569 ORTHO05D005333 8.7e-20 100.9 122 43.4
TPR.G14863 Trifolium pratense HOM05D004569 ORTHO05D005333 1.1e-19 100.5 117 41.0
VMungo1383G2501 Vigna mungo HOM05D004569 ORTHO05D005333 1.5e-19 100.1 124 42.7
Rhsim01G0189100 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.9e-19 99.8 123 41.5
Nitab4.5_0000321g0230 Nicotiana tabacum HOM05D004569 ORTHO05D005333 2.5e-19 99.4 129 41.9
TWI63G1720 Tripterygium wilfordii HOM05D004569 ORTHO05D005333 2.5e-19 99.4 122 43.4
Ah.02g110960 Amaranthus hybridus HOM05D000936 ORTHO05D001411 4.3e-19 98.6 117 43.6
MD13G1198900 Malus domestica HOM05D004569 ORTHO05D005333 4.3e-19 98.6 122 41.0
Medtr6g045603 Medicago truncatula HOM05D004569 ORTHO05D005333 4.3e-19 98.6 124 41.9
Nitab4.5_0004412g0030 Nicotiana tabacum HOM05D004569 ORTHO05D005333 4.3e-19 98.6 126 42.9
SGA_v2.0_scaffold45G17132 Striga asiatica HOM05D004044 ORTHO05D005333 4.3e-19 98.6 122 41.8
VMungo1383G1439 Vigna mungo HOM05D004569 ORTHO05D005333 4.3e-19 98.6 128 41.4
CDE05G0131 Ceratophyllum demersum HOM05D004569 ORTHO05D005333 5.6e-19 98.2 124 41.9
Lsat_1_v5_gn_1_12980 Lactuca sativa HOM05D004569 ORTHO05D005333 7.3e-19 97.8 124 41.1
Cc03_g04240 Coffea canephora HOM05D004569 ORTHO05D005333 9.6e-19 97.4 127 44.1
Oeu042815.1 Olea europaea HOM05D004569 ORTHO05D005333 9.6e-19 97.4 124 40.3
Peaxi162Scf00192g01617 Petunia axillaris HOM05D004569 ORTHO05D005333 9.6e-19 97.4 124 42.7
GSVIVG01036653001 Vitis vinifera HOM05D004569 ORTHO05D005333 9.6e-19 97.4 119 43.7
Duzib052G0972 Durio zibethinus HOM05D004569 ORTHO05D005333 1.3e-18 97.1 122 42.6
Manes.02G208200 Manihot esculenta HOM05D004569 ORTHO05D005333 1.3e-18 97.1 123 43.9
CsaV3_2G013430 Cucumis sativus L. HOM05D004569 ORTHO05D005333 1.6e-18 96.7 124 41.9
Atru.chr4.2374 Acer truncatum HOM05D004569 ORTHO05D005333 2.1e-18 96.3 119 42.0
Aa31LG11G680 Aethionema arabicum HOM05D004569 ORTHO05D005333 2.8e-18 95.9 124 42.7
AT5G62950 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 8.1e-18 94.4 122 43.4
Prupe.1G020700 Prunus persica HOM05D004569 ORTHO05D005333 1.1e-17 94.0 121 40.5
RcHm_v2.0_Chr6g0280701 Rosa chinensis HOM05D004569 ORTHO05D005333 1.1e-17 94.0 121 42.1
vmacro17995 Vaccinium macrocarpon HOM05D004569 ORTHO05D005333 1.1e-17 94.0 119 40.3
FvH4_4g01070 Fragaria vesca HOM05D004569 ORTHO05D005333 1.4e-17 93.6 121 40.5
CAN.G135.33 Capsicum annuum HOM05D004569 ORTHO05D005333 1.8e-17 93.2 121 41.3
CSS0049273 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 2.4e-17 92.8 118 43.2
RcHm_v2.0_Chr4g0387641 Rosa chinensis HOM05D004569 ORTHO05D005333 2.4e-17 92.8 121 41.3
AUR62028629 Chenopodium quinoa HOM05D004569 ORTHO05D005333 3.1e-17 92.4 125 39.2
MELO3C014285.2 Cucumis melo HOM05D004569 ORTHO05D005333 4.0e-17 92.0 138 40.6
AL8G39970 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 5.3e-17 91.7 122 42.6
CARHR276760 Cardamine hirsuta HOM05D004569 ORTHO05D005333 5.3e-17 91.7 122 43.4
SalBow2G1663 Salvia bowleyana HOM05D004569 ORTHO05D005333 5.3e-17 91.7 125 40.8
SEGI_13490 Sequoiadendron giganteum HOM05D004569 ORTHO05D000001 5.3e-17 91.7 82 52.4
FAN12G4296 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.9e-17 91.3 119 40.3
CSS0011446 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 9.0e-17 90.9 120 40.8
Thhalv10005100m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 9.0e-17 90.9 122 42.6
Sc19g0003960 Simmondsia chinensis HOM05D004569 ORTHO05D005333 9.0e-17 90.9 124 38.7
AL3G51140 Arabidopsis lyrata HOM05D004569 ORTHO05D005333 1.2e-16 90.5 122 42.6
Ca_17658_v3 Cicer arietinum L. HOM05D004569 ORTHO05D005333 1.2e-16 90.5 122 39.3
Carub.0004s0755 Capsella rubella HOM05D004569 ORTHO05D005333 2.0e-16 89.7 124 41.1
Medtr6g045613 Medicago truncatula HOM05D004569 ORTHO05D005333 2.6e-16 89.4 92 47.8
BcaB07g29675 Brassica carinata HOM05D004569 ORTHO05D005333 3.4e-16 89.0 120 40.8
BcaC08g46303 Brassica carinata HOM05D004569 ORTHO05D005333 3.4e-16 89.0 123 40.7
CBR_g19683 Chara braunii HOM05D004569 ORTHO05D005333 4.5e-16 88.6 93 51.6
BolC6t39293H Brassica oleracea HOM05D004569 ORTHO05D005333 5.8e-16 88.2 123 40.7
BcaC04g23378 Brassica carinata HOM05D004569 ORTHO05D005333 7.6e-16 87.8 120 39.2
C06p41320 Brassica napus HOM05D004569 ORTHO05D005333 7.6e-16 87.8 122 41.0
BcaB04g19957 Brassica carinata HOM05D004569 ORTHO05D005333 9.9e-16 87.4 122 40.2
Carub.0008s2366 Capsella rubella HOM05D004569 ORTHO05D005333 1.3e-15 87.0 126 40.5
Rhsim04G0197700 Rhododendron simsii HOM05D004569 ORTHO05D005333 1.3e-15 87.0 121 38.0
BcaC03g18183 Brassica carinata HOM05D004569 ORTHO05D005333 1.7e-15 86.7 122 40.2
C02p62490 Brassica napus HOM05D004569 ORTHO05D005333 1.7e-15 86.7 121 41.3
BolC2t12308H Brassica oleracea HOM05D004569 ORTHO05D005333 1.7e-15 86.7 121 41.3
A02p42590 Brassica napus HOM05D004569 ORTHO05D005333 2.2e-15 86.3 121 41.3
C09p08990 Brassica napus HOM05D004569 ORTHO05D005333 2.2e-15 86.3 120 39.2
BolC9t53811H Brassica oleracea HOM05D004569 ORTHO05D005333 2.2e-15 86.3 120 39.2
BraA02t09187Z Brassica rapa HOM05D004569 ORTHO05D005333 2.2e-15 86.3 121 41.3
Thhalv10000370m.g Eutrema salsugineum HOM05D004569 ORTHO05D005333 2.2e-15 86.3 122 41.0
Os12g0488800 Oryza sativa ssp. japonica HOM05D004569 ORTHO05D005333 2.2e-15 86.3 92 45.7
Peaxi162Scf00904g00217 Petunia axillaris HOM05D004569 ORTHO05D005333 2.9e-15 85.9 122 41.8
SalBow8G0974 Salvia bowleyana HOM05D004569 ORTHO05D005333 3.8e-15 85.5 120 39.2
Sp2g26090 Schrenkiella parvula HOM05D004569 ORTHO05D005333 3.8e-15 85.5 120 40.0
Lsat_1_v5_gn_6_95400 Lactuca sativa HOM05D004569 ORTHO05D005333 1.4e-14 83.6 107 42.1
FvH4_5g27570 Fragaria vesca HOM05D004569 ORTHO05D005333 1.9e-14 83.2 121 38.0
A09p07940 Brassica napus HOM05D004569 ORTHO05D005333 7.1e-14 81.3 124 37.9
Psat3g162000 Pisum sativum HOM05D004569 ORTHO05D005333 1.2e-13 80.5 91 44.0
BraA09t36445Z Brassica rapa HOM05D004569 ORTHO05D005333 2.7e-13 79.3 123 38.2
Sabra05G0055500 Salix brachista HOM05D004569 ORTHO05D005333 2.7e-13 79.3 89 42.7
Sopen11g003670 Solanum pennellii HOM05D004569 ORTHO05D005333 4.6e-13 78.6 140 36.4
Nitab4.5_0004743g0130 Nicotiana tabacum HOM05D004569 ORTHO05D005333 1.3e-12 77.0 126 39.7
Atru.chr4.2398 Acer truncatum HOM05D004569 ORTHO05D005333 2.3e-12 76.3 94 42.6
COL.COLO4_21559 Corchorus olitorius HOM05D004569 ORTHO05D005333 2.3e-12 76.3 90 38.9
Migut.B00535 Erythranthe guttata HOM05D004569 ORTHO05D005333 2.3e-12 76.3 96 41.7
TAR636G3114 Trochodendron aralioides HOM05D004569 ORTHO05D005333 2.3e-12 76.3 80 41.2
Atru.chr5.182 Acer truncatum HOM05D004569 ORTHO05D005333 6.7e-12 74.7 84 40.5
FAN13G2556 Fragaria x ananassa HOM05D004569 ORTHO05D005333 6.7e-12 74.7 118 37.3
Dinv40544 Davidia involucrata HOM05D004569 ORTHO05D005333 3.3e-11 72.4 90 40.0
BcaC01g02544 Brassica carinata HOM05D004569 ORTHO05D005333 5.6e-11 71.6 121 38.0
C03p63650 Brassica napus HOM05D004569 ORTHO05D005333 5.6e-11 71.6 121 38.0
BolC3t18624H Brassica oleracea HOM05D004569 ORTHO05D005333 5.6e-11 71.6 121 38.0
HPP92_022914 Vanilla planifolia HOM05D004569 ORTHO05D005333 1.3e-10 70.5 136 35.3
arahy.Tifrunner.gnm1.ann1.LSLG48 Arachis hypogaea HOM05D001291 ORTHO05D005333 1.6e-10 70.1 78 43.6
Hma1.2p1_0602F.1_g187570 Hydrangea macrophylla HOM05D004569 ORTHO05D005333 2.1e-10 69.7 87 39.1
PGSC0003DMG400027326 Solanum tuberosum HOM05D004569 ORTHO05D005333 3.7e-10 68.9 140 32.9
SalBow1G3047 Salvia bowleyana HOM05D004569 ORTHO05D005333 6.2e-10 68.2 94 39.4
BraA06t25922Z Brassica rapa HOM05D004569 ORTHO05D005333 1.5e-08 63.5 116 31.9
SEGI_07191 Sequoiadendron giganteum HOM05D004569 ORTHO05D005333 1.5e-08 63.5 71 46.5
CSS0028808 Camellia sinensis var. sinensis HOM05D004569 ORTHO05D005333 3.4e-08 62.4 120 34.2
Dinv07599 Davidia involucrata HOM05D004569 ORTHO05D005333 3.4e-08 62.4 73 43.8
BcaB02g09711 Brassica carinata HOM05D004569 ORTHO05D005333 7.6e-08 61.2 114 33.3
Aqoxy2G03457 Aquilegia oxysepala HOM05D004569 ORTHO05D005333 1.3e-07 60.5 83 39.8
AUR62033084 Chenopodium quinoa HOM05D004569 ORTHO05D005333 1.3e-07 60.5 92 37.0
AT3G28956 Arabidopsis thaliana HOM05D004569 ORTHO05D005333 1.1e-06 57.4 62 45.2
Cre13.g564550 Chlamydomonas reinhardtii HOM05D004569 ORTHO05D005333 2.4e-06 56.2 81 33.3


User provided reference genes

Program Settings