Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 2.4e-301 1038.1 545 100.0
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 3.6e-188 662.1 498 63.7
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 1.5e-181 640.2 465 66.2
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 9.8e-162 574.3 544 53.7
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 2.5e-149 533.1 507 54.4
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 3.6e-148 529.3 513 53.8
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 2.6e-146 523.1 446 57.2
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 2.6e-146 523.1 505 53.1
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 9.8e-146 521.2 505 52.3
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 2.1e-143 513.5 535 49.0
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 2.7e-143 513.1 533 50.5
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 7.8e-143 511.5 540 49.6
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 7.8e-143 511.5 507 51.7
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 1.0e-142 511.1 507 52.3
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 1.7e-142 510.4 524 51.0
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 3.0e-142 509.6 509 51.1
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 1.9e-141 506.9 524 50.4
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 2.5e-141 506.5 507 50.9
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 2.5e-141 506.5 506 49.6
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 4.3e-141 505.8 522 50.0
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 4.3e-141 505.8 508 50.6
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 5.6e-141 505.4 504 51.4
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 7.3e-141 505.0 507 51.5
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 1.2e-140 504.2 508 50.4
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 1.2e-140 504.2 531 50.5
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 3.6e-140 502.7 509 50.9
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 3.6e-140 502.7 508 51.2
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 1.1e-139 501.1 508 49.8
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 1.1e-139 501.1 535 49.3
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 1.4e-139 500.7 510 51.0
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 1.4e-139 500.7 531 49.7
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 2.3e-139 500.0 504 50.4
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 2.3e-139 500.0 504 50.6
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 3.1e-139 499.6 506 49.6
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 5.2e-139 498.8 506 49.6
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 1.2e-138 497.7 462 52.4
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.5e-138 497.3 525 49.5
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 1.5e-138 497.3 506 50.0
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 1.5e-138 497.3 511 49.9
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 2.6e-138 496.5 519 50.7
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 3.4e-138 496.1 505 49.9
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 4.4e-138 495.7 509 50.5
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 7.5e-138 495.0 517 48.7
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 9.9e-138 494.6 507 49.9
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 1.3e-137 494.2 506 49.6
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 1.7e-137 493.8 537 48.2
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 2.2e-137 493.4 510 50.4
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 2.9e-137 493.0 507 49.7
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 2.9e-137 493.0 537 48.0
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 3.7e-137 492.7 507 51.5
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 3.7e-137 492.7 506 49.4
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 3.7e-137 492.7 506 49.4
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 4.9e-137 492.3 445 53.5
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 1.4e-136 490.7 507 50.1
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 1.9e-136 490.3 531 48.8
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 1.9e-136 490.3 506 49.2
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 2.4e-136 490.0 503 49.7
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 2.4e-136 490.0 536 47.9
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 3.2e-136 489.6 505 51.5
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 3.2e-136 489.6 510 50.6
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 5.4e-136 488.8 514 50.6
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 5.4e-136 488.8 511 49.9
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 9.2e-136 488.0 518 49.6
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 4.6e-135 485.7 507 53.1
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 6.0e-135 485.3 510 49.4
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 3.0e-134 483.0 511 49.1
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 3.0e-134 483.0 540 47.6
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 3.9e-134 482.6 415 56.4
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 2.5e-133 479.9 510 48.4
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 2.5e-133 479.9 504 51.6
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 1.2e-132 477.6 519 48.2
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 6.2e-132 475.3 511 48.9
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 6.2e-132 475.3 508 49.6
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 8.1e-132 474.9 521 48.0
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 2.0e-130 470.3 515 48.9
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 2.6e-130 469.9 423 53.7
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 7.6e-130 468.4 560 46.6
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.9e-128 463.8 537 46.2
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 2.4e-128 463.4 507 48.9
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 4.2e-128 462.6 561 46.2
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 5.4e-128 462.2 509 51.3
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 5.4e-128 462.2 507 48.3
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 7.1e-128 461.8 508 48.2
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 9.2e-128 461.5 508 48.2
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 2.7e-127 459.9 507 48.1
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 2.7e-127 459.9 508 48.4
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 3.5e-127 459.5 507 50.9
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 3.5e-127 459.5 509 48.9
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 6.0e-127 458.8 514 47.7
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 1.0e-126 458.0 507 47.7
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 1.0e-126 458.0 407 53.6
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 1.7e-126 457.2 508 47.8
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 2.3e-126 456.8 506 48.0
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 5.1e-126 455.7 509 48.1
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 6.6e-126 455.3 509 50.7
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 3.3e-125 453.0 446 51.6
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 7.3e-125 451.8 507 48.7
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 7.3e-125 451.8 512 47.3
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 2.8e-124 449.9 506 47.4
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 3.6e-124 449.5 521 46.4
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 8.1e-124 448.4 537 45.8
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 4.0e-123 446.0 508 47.0
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 4.0e-123 446.0 546 44.7
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 5.3e-123 445.7 521 46.4
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 1.2e-122 444.5 357 59.9
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 2.6e-122 443.4 507 49.5
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 4.9e-121 439.1 505 46.5
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 1.9e-120 437.2 474 49.8
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 3.3e-117 426.4 527 44.6
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 1.8e-115 420.6 563 43.0
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 1.2e-114 417.9 472 47.7
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 2.6e-114 416.8 553 42.5
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 2.2e-113 413.7 592 40.4
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 7.1e-112 408.7 542 43.9
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 4.6e-111 406.0 429 48.7
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 8.7e-110 401.7 432 47.5
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 1.5e-109 401.0 566 41.0
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 6.2e-108 395.6 521 43.4
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.1e-107 394.8 527 43.1
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 3.1e-107 393.3 412 50.2
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 1.4e-104 384.4 555 40.4
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 3.2e-104 383.3 462 46.3
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 1.8e-102 377.5 405 47.7
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 4.8e-100 369.4 382 50.8
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 4.4e-77 293.1 497 36.8
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 6.7e-70 269.2 311 43.4
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 7.4e-69 265.8 329 45.0
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 1.7e-68 264.6 324 44.1
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 1.2e-66 258.5 442 36.9
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 4.8e-60 236.5 272 46.0
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 8.0e-55 219.2 284 42.3
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 1.7e-52 211.5 163 62.0
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 4.4e-29 133.7 105 60.0
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 1.5e-16 92.0 75 58.7
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 3.3e-16 90.9 123 39.8
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 1.7e-12 78.6 62 59.7
Nn7g38170 Nelumbo nucifera HOM05D003335 ORTHO05D003853 3.2e-11 74.3 248 25.4
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 4.2e-11 73.9 59 62.7
TAR365G0561 Trochodendron aralioides HOM05D003335 ORTHO05D003853 4.2e-11 73.9 248 26.2
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 5.4e-11 73.6 63 52.4
MBI10_g35441_MAGBIO Magnolia biondii HOM05D003335 ORTHO05D003853 7.1e-11 73.2 248 25.0
PSO832G0093 Papaver somniferum HOM05D003335 ORTHO05D003853 7.1e-11 73.2 248 25.0
Os10g0466300 Oryza sativa ssp. japonica HOM05D003335 ORTHO05D003853 9.3e-11 72.8 248 24.2
Atru.chr4.1923 Acer truncatum HOM05D003335 ORTHO05D003853 2.7e-10 71.2 252 25.0
AagrBONN_evm.TU.Sc2ySwM_344.1571 Anthoceros agrestis HOM05D003335 ORTHO05D003853 2.7e-10 71.2 206 26.7
Zm00001eb046370 Zea mays HOM05D003335 ORTHO05D003853 2.7e-10 71.2 249 24.5
Zm00001eb222190 Zea mays HOM05D003335 ORTHO05D003853 2.7e-10 71.2 249 24.5
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 6.0e-10 70.1 56 62.5
Potri.010G066000 Populus trichocarpa HOM05D003335 ORTHO05D003853 6.0e-10 70.1 246 25.2
Mapoly0157s0022 Marchantia polymorpha HOM05D003335 ORTHO05D003853 7.8e-10 69.7 283 24.7
PSO764G0342 Papaver somniferum HOM05D003335 ORTHO05D003853 1.3e-09 68.9 248 24.2
Aqoxy2G03744 Aquilegia oxysepala HOM05D003335 ORTHO05D003853 1.7e-09 68.6 257 25.3
MBI19_g02322_MAGBIO Magnolia biondii HOM05D003335 ORTHO05D003853 2.3e-09 68.2 235 24.3
Potri.008G171600 Populus trichocarpa HOM05D003335 ORTHO05D003853 2.3e-09 68.2 246 23.6
Pp3c6_19920 Physcomitrium patens HOM05D003335 ORTHO05D003853 3.0e-09 67.8 248 25.0
SMO367G1087 Selaginella moellendorffii HOM05D003335 ORTHO05D003853 3.0e-09 67.8 287 23.3
Glyma.20G084500 Glycine max HOM05D003335 ORTHO05D003853 1.5e-08 65.5 249 25.3
Lalb_Chr19g0128501 Lupinus albus HOM05D003335 ORTHO05D003853 1.5e-08 65.5 249 25.7
Glyma.10G133700 Glycine max HOM05D003335 ORTHO05D003853 1.9e-08 65.1 249 25.3
CDE07G1168 Ceratophyllum demersum HOM05D000526 ORTHO05D002053 2.5e-08 64.7 188 27.1
Sabra10G0041200 Salix brachista HOM05D003335 ORTHO05D003853 3.3e-08 64.3 165 26.7
AUR62035089 Chenopodium quinoa HOM05D003335 ORTHO05D003853 5.6e-08 63.5 167 25.1
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 5.6e-08 63.5 67 43.3
Sabra08G0131000 Salix brachista HOM05D003335 ORTHO05D003853 5.6e-08 63.5 165 25.5
Ah.04g155250 Amaranthus hybridus HOM05D003335 ORTHO05D003853 7.3e-08 63.2 247 21.5
CDE04G0497 Ceratophyllum demersum HOM05D000526 ORTHO05D002053 7.3e-08 63.2 188 27.7
Lalb_Chr01g0020321 Lupinus albus HOM05D003335 ORTHO05D003853 9.6e-08 62.8 168 27.4
VMungo0720G1182 Vigna mungo HOM05D003335 ORTHO05D003853 1.3e-07 62.4 249 24.9
AUR62016172 Chenopodium quinoa HOM05D003335 ORTHO05D003853 2.8e-07 61.2 185 24.9
Phvul.007G270500 Phaseolus vulgaris HOM05D003335 ORTHO05D003853 2.8e-07 61.2 247 24.3
Zm00001eb139790 Zea mays HOM05D000526 ORTHO05D002053 3.6e-07 60.8 181 25.4
SHI00771 Sapria himalayana HOM05D003335 ORTHO05D003853 8.1e-07 59.7 246 23.2
VMungo0464G1091 Vigna mungo HOM05D002288 ORTHO05D002894 8.1e-07 59.7 220 28.2
EL10Ac3g04947 Beta vulgaris HOM05D003335 ORTHO05D003853 1.1e-06 59.3 167 25.1
Ah.13g072240 Amaranthus hybridus HOM05D003335 ORTHO05D003853 1.8e-06 58.5 181 23.8
Pp3c5_9900 Physcomitrium patens HOM05D003335 ORTHO05D003853 3.1e-06 57.8 170 25.9


User provided reference genes

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