Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 0.0e+00 1692.2 874 100.0
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 4.5e-100 370.2 836 33.3
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.9e-90 338.2 845 30.3
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.1e-77 295.8 819 29.8
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 6.1e-73 280.0 824 29.5
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 6.3e-70 270.0 824 27.8
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 8.3e-70 269.6 818 27.5
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.0e-68 265.0 809 28.2
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 7.7e-68 263.1 829 28.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 2.3e-67 261.5 815 28.8
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 6.6e-67 260.0 815 28.3
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.9e-66 258.5 805 27.8
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 8.0e-65 253.1 806 27.0
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 1.4e-64 252.3 812 28.0
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 2.0e-63 248.4 814 27.4
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 2.6e-63 248.1 810 27.5
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 3.4e-63 247.7 829 27.9
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.7e-63 246.9 814 27.3
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 7.5e-63 246.5 821 26.1
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 7.5e-63 246.5 814 26.9
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 1.3e-62 245.7 821 27.2
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.2e-62 245.0 814 27.4
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.7e-62 244.2 812 27.8
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 3.7e-62 244.2 646 29.4
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 6.3e-62 243.4 819 27.5
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 6.3e-62 243.4 819 28.1
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 1.1e-61 242.7 675 28.6
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.4e-61 242.3 829 26.5
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.1e-61 241.1 825 26.1
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 4.1e-61 240.7 825 26.1
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 7.0e-61 240.0 818 27.5
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 9.2e-61 239.6 814 26.9
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 9.2e-61 239.6 814 26.9
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.2e-60 239.2 633 30.2
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.6e-60 238.8 846 26.1
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.6e-60 238.8 817 27.2
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 3.5e-60 237.7 655 29.2
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 4.5e-60 237.3 825 26.7
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 5.9e-60 236.9 611 29.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.9e-60 236.9 806 27.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 7.8e-60 236.5 824 26.2
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 7.8e-60 236.5 823 26.6
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.0e-59 236.1 639 29.3
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 2.3e-59 235.0 811 25.4
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 2.3e-59 235.0 815 26.4
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 6.6e-59 233.4 625 29.3
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 6.6e-59 233.4 802 27.7
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 6.6e-59 233.4 807 28.1
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 1.1e-58 232.6 897 26.3
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.1e-58 232.6 819 27.1
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.5e-58 232.3 678 27.6
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 7.3e-58 229.9 817 26.2
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.2e-57 229.2 669 26.0
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 1.2e-57 229.2 679 28.7
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 2.1e-57 228.4 667 29.2
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 2.1e-57 228.4 623 27.9
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 1.0e-56 226.1 476 31.3
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.8e-56 225.3 670 28.1
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 1.8e-56 225.3 821 26.2
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 1.8e-56 225.3 805 27.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.3e-56 224.9 809 25.1
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 3.1e-56 224.6 819 24.9
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 4.0e-56 224.2 666 27.2
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 5.2e-56 223.8 653 28.2
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 8.9e-56 223.0 658 28.3
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 8.9e-56 223.0 666 29.0
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 1.2e-55 222.6 810 25.1
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 2.0e-55 221.9 466 32.2
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 2.0e-55 221.9 593 27.8
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 3.4e-55 221.1 620 29.4
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 5.8e-55 220.3 806 26.7
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 5.8e-55 220.3 677 27.2
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 5.8e-55 220.3 822 24.9
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 7.5e-55 219.9 831 26.6
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 7.5e-55 219.9 811 25.9
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 9.8e-55 219.5 633 28.4
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 2.9e-54 218.0 619 28.9
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 3.7e-54 217.6 604 29.3
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.9e-54 217.2 610 27.7
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.4e-53 215.7 666 29.3
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 4.1e-53 214.2 811 26.3
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 9.2e-53 213.0 814 24.6
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 1.2e-52 212.6 497 29.6
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 2.0e-52 211.8 553 28.9
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 4.6e-52 210.7 499 30.7
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 7.8e-52 209.9 813 25.6
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 7.8e-52 209.9 609 27.3
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 1.0e-51 209.5 810 24.7
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 3.9e-51 207.6 808 24.0
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 6.6e-51 206.8 326 36.8
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.5e-50 205.7 662 26.7
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 1.5e-50 205.7 667 26.4
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 6.2e-49 200.3 810 25.1
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 3.1e-48 198.0 814 24.8
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.0e-47 195.3 319 35.1
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 2.6e-47 194.9 620 27.4
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 5.8e-47 193.7 630 27.1
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 1.3e-46 192.6 598 27.1
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 2.2e-46 191.8 832 24.6
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 4.9e-46 190.7 668 28.0
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.4e-45 188.3 689 25.7
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 2.4e-45 188.3 813 23.9
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 6.0e-44 183.7 677 24.5
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.3e-43 182.6 584 28.1
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.3e-43 181.8 822 24.2
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 6.6e-43 180.3 617 24.1
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 3.3e-42 177.9 806 24.3
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 3.3e-42 177.9 798 23.8
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 7.3e-42 176.8 697 24.8
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 6.2e-41 173.7 589 25.6
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 1.8e-40 172.2 807 24.0
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 1.2e-39 169.5 819 24.7
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 3.4e-39 167.9 817 23.6
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 8.3e-38 163.3 441 28.8
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.2e-37 161.4 301 32.6
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.0e-35 156.4 576 26.0
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 1.3e-35 156.0 807 23.7
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 3.9e-35 154.5 461 29.1
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 3.6e-33 147.9 533 26.3
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.8e-32 143.7 543 25.0
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 1.2e-31 142.9 331 28.7
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 4.4e-31 141.0 186 42.5
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.7e-30 139.0 166 42.2
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 6.0e-28 130.6 402 29.1
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.0e-27 129.8 232 37.5
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 2.3e-27 128.6 168 43.5
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 4.3e-26 124.4 335 30.7
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 4.3e-26 124.4 700 23.3
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 2.1e-20 105.5 459 24.0
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 7.8e-20 103.6 229 31.4
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.7e-19 102.4 215 33.0
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 3.9e-19 101.3 450 25.1
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.3e-18 97.8 171 35.1
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.6e-17 95.9 264 29.2
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 6.2e-17 94.0 141 36.9
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.1e-16 93.2 300 27.7
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 6.9e-16 90.5 215 31.2
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 5.4e-13 80.9 400 24.5
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 6.9e-08 63.9 104 34.6
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 9.0e-08 63.5 94 34.0
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 2.0e-07 62.4 85 41.2
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.3e-06 59.7 66 42.4
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 2.2e-06 58.9 199 26.6


User provided reference genes

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