Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 4.6e-257 891.0 534 100.0
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 1.6e-124 450.7 529 57.3
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 1.2e-98 364.8 527 46.1
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 3.1e-96 356.7 529 40.1
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 1.4e-91 341.3 527 49.1
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.8e-88 330.9 527 47.6
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 1.8e-88 330.9 527 47.8
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 2.0e-87 327.4 526 41.3
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 5.9e-87 325.9 535 38.1
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 1.1e-85 321.6 528 37.7
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 2.5e-85 320.5 547 38.2
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 4.3e-85 319.7 528 39.4
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 7.3e-85 318.9 532 39.3
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 1.6e-84 317.8 532 39.7
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 1.6e-84 317.8 533 37.7
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 2.8e-84 317.0 526 36.1
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 8.0e-84 315.5 531 46.1
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.4e-83 314.7 500 47.6
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 3.1e-83 313.5 532 37.0
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 5.2e-83 312.8 533 45.0
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 1.2e-82 311.6 534 36.9
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 2.6e-82 310.5 539 35.8
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 3.4e-82 310.1 529 45.9
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 5.8e-82 309.3 526 45.4
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 1.3e-81 308.1 527 39.8
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 1.3e-81 308.1 530 38.9
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 8.3e-81 305.4 532 39.1
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 8.3e-81 305.4 536 43.7
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 1.9e-80 304.3 536 44.0
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 2.4e-80 303.9 529 43.7
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 7.0e-80 302.4 528 34.8
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 7.0e-80 302.4 532 44.4
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 7.0e-80 302.4 536 43.5
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 9.2e-80 302.0 529 44.8
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 9.2e-80 302.0 528 43.8
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 9.2e-80 302.0 528 43.8
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 1.2e-79 301.6 529 43.9
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 1.2e-79 301.6 530 43.6
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 1.2e-79 301.6 536 43.3
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 2.0e-79 300.8 536 43.3
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 3.5e-79 300.1 538 43.7
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 1.0e-78 298.5 525 36.6
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 1.3e-78 298.1 527 38.9
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 1.7e-78 297.7 529 34.6
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 1.7e-78 297.7 532 35.2
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 2.3e-78 297.4 540 37.8
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 2.3e-78 297.4 527 37.6
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 2.3e-78 297.4 532 35.5
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 3.0e-78 297.0 529 42.3
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 3.0e-78 297.0 528 43.0
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 3.9e-78 296.6 527 43.8
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 3.9e-78 296.6 532 34.4
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 3.9e-78 296.6 527 34.9
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.9e-77 294.3 538 35.1
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 3.3e-77 293.5 532 44.2
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 4.3e-77 293.1 537 35.4
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 5.6e-77 292.7 531 42.6
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 7.3e-77 292.4 532 44.2
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 7.3e-77 292.4 532 34.4
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 1.2e-76 291.6 540 37.8
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.6e-76 291.2 522 35.1
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 2.8e-76 290.4 533 44.1
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 3.6e-76 290.0 530 42.1
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 3.6e-76 290.0 534 44.4
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 4.7e-76 289.7 534 44.0
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 6.2e-76 289.3 541 35.5
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 8.0e-76 288.9 532 42.1
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 8.0e-76 288.9 527 34.3
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 8.0e-76 288.9 532 44.2
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 1.1e-75 288.5 538 35.3
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 1.4e-75 288.1 534 43.4
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 2.3e-75 287.3 491 36.9
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 3.1e-75 287.0 527 35.3
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 3.1e-75 287.0 527 35.3
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 3.1e-75 287.0 522 34.5
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 3.1e-75 287.0 522 34.5
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 4.0e-75 286.6 527 44.6
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 4.0e-75 286.6 526 34.0
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 6.8e-75 285.8 529 44.2
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 2.0e-74 284.3 528 33.7
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 2.6e-74 283.9 530 33.2
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 1.7e-73 281.2 534 34.1
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 3.7e-73 280.0 530 33.6
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 4.9e-73 279.6 530 37.0
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 6.4e-73 279.3 521 43.0
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 1.1e-72 278.5 525 33.3
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 2.4e-72 277.3 534 33.3
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 3.2e-72 276.9 520 33.3
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 5.1e-70 269.6 528 32.8
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 6.6e-70 269.2 525 31.8
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 2.5e-69 267.3 522 40.8
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 4.3e-69 266.5 525 31.8
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 8.1e-68 262.3 524 34.4
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 2.3e-67 260.8 524 42.0
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 8.9e-67 258.8 525 31.2
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 8.9e-67 258.8 524 31.3
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 3.4e-66 256.9 541 33.5
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 4.4e-66 256.5 525 31.2
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 4.4e-66 256.5 528 30.9
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 5.8e-66 256.1 528 31.4
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 9.9e-66 255.4 524 30.9
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 2.2e-65 254.2 525 30.9
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 2.9e-65 253.8 529 33.5
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 4.9e-65 253.1 529 33.5
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 6.0e-63 246.1 524 43.1
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 1.5e-61 241.5 518 32.2
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 1.9e-61 241.1 532 32.9
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 2.5e-61 240.7 512 39.6
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 9.6e-61 238.8 531 32.0
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 6.8e-59 232.6 449 43.9
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 8.9e-59 232.3 527 32.4
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 3.8e-57 226.9 427 34.2
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 1.5e-53 214.9 321 38.3
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.9e-53 214.5 262 45.0
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 9.9e-50 202.2 387 47.0
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 1.2e-34 152.1 281 35.2
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 1.4e-32 145.2 522 26.2
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 2.1e-31 141.4 505 29.9
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 5.1e-22 110.2 322 26.4
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.4e-19 102.1 210 35.2
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 1.8e-19 101.7 229 32.3
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 2.5e-16 91.3 87 49.4
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 7.9e-15 86.3 163 36.2
CBR_g31026 Chara braunii HOM05D005544 ORTHO05D007303 3.9e-14 84.0 269 28.3
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 8.8e-14 82.8 132 38.6
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 7.4e-13 79.7 93 46.2
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 7.7e-10 69.7 52 57.7
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 2.2e-09 68.2 105 32.4
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 2.9e-09 67.8 87 39.1
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 8.5e-09 66.2 108 33.3
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 2.1e-07 61.6 104 32.7
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 2.7e-07 61.2 87 36.8


User provided reference genes

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