Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 3.2e-176 621.7 327 100.0
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 2.6e-77 293.1 250 61.6
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 1.1e-64 251.1 277 49.8
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 1.5e-64 250.8 252 53.2
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 1.9e-64 250.4 251 53.0
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 1.3e-63 247.7 256 53.5
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 1.3e-63 247.7 256 53.5
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 2.8e-63 246.5 319 45.5
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 1.1e-62 244.6 251 53.0
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 1.4e-62 244.2 251 52.6
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 3.1e-62 243.0 251 53.4
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 4.0e-62 242.7 276 50.4
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 6.9e-62 241.9 220 58.2
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 6.9e-62 241.9 251 52.6
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 1.2e-61 241.1 312 46.8
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 2.0e-61 240.4 251 52.2
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 2.0e-61 240.4 293 48.1
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 2.6e-61 240.0 304 47.4
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 7.6e-61 238.4 251 51.0
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 7.6e-61 238.4 250 51.6
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 5.0e-60 235.7 251 50.2
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 6.5e-60 235.3 220 56.4
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 6.5e-60 235.3 310 46.8
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 1.4e-59 234.2 251 52.2
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 4.2e-59 232.6 220 56.4
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 4.2e-59 232.6 223 56.5
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 7.1e-59 231.9 248 51.2
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 7.1e-59 231.9 251 50.6
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 9.3e-59 231.5 251 50.6
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.2e-58 231.1 246 52.0
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.2e-58 231.1 251 51.0
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 1.6e-58 230.7 312 46.8
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 2.1e-58 230.3 283 47.7
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 2.7e-58 229.9 251 49.8
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 2.7e-58 229.9 220 55.5
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 3.5e-58 229.6 251 50.2
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 4.6e-58 229.2 251 51.4
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 4.6e-58 229.2 254 50.0
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 6.1e-58 228.8 276 47.5
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 1.0e-57 228.0 252 51.6
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 1.8e-57 227.3 251 50.6
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 3.0e-57 226.5 235 51.9
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 3.9e-57 226.1 252 49.6
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 5.1e-57 225.7 250 50.4
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 6.7e-57 225.3 251 49.4
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 8.7e-57 224.9 276 47.5
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 8.7e-57 224.9 284 47.5
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 1.1e-56 224.6 276 47.1
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 1.5e-56 224.2 250 49.2
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 1.5e-56 224.2 276 48.2
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.9e-56 223.8 252 49.6
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 2.5e-56 223.4 276 47.5
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 2.5e-56 223.4 255 49.4
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 2.5e-56 223.4 251 49.4
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 4.3e-56 222.6 254 50.0
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 5.7e-56 222.2 248 50.0
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 7.4e-56 221.9 254 49.2
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 9.7e-56 221.5 253 49.0
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 9.7e-56 221.5 310 46.1
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 2.8e-55 219.9 313 46.6
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 6.3e-55 218.8 287 47.0
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 6.3e-55 218.8 251 48.6
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 1.1e-54 218.0 251 48.2
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 1.4e-54 217.6 254 48.8
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 1.8e-54 217.2 252 48.4
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 2.4e-54 216.9 251 47.8
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 2.4e-54 216.9 221 53.4
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 4.1e-54 216.1 178 62.9
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 4.1e-54 216.1 255 47.5
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 5.3e-54 215.7 221 52.9
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 5.3e-54 215.7 253 49.0
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 6.9e-54 215.3 238 50.0
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 6.9e-54 215.3 302 44.0
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 9.0e-54 214.9 253 47.8
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 9.0e-54 214.9 255 47.1
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 1.2e-53 214.5 242 50.0
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 1.2e-53 214.5 203 54.7
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 1.2e-53 214.5 290 45.9
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 2.0e-53 213.8 224 51.8
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 2.0e-53 213.8 235 50.6
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 2.0e-53 213.8 288 44.4
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 2.6e-53 213.4 224 53.1
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 2.6e-53 213.4 298 44.0
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 3.4e-53 213.0 251 48.6
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 3.4e-53 213.0 251 48.2
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 4.5e-53 212.6 203 56.2
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 5.9e-53 212.2 296 43.9
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 7.7e-53 211.8 223 52.0
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 7.7e-53 211.8 296 43.9
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 1.7e-52 210.7 226 50.9
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 6.5e-52 208.8 255 45.9
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 6.5e-52 208.8 236 49.2
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 1.1e-51 208.0 242 47.9
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 4.2e-51 206.1 252 47.6
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 9.4e-51 204.9 257 46.7
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 1.2e-50 204.5 268 44.8
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 1.2e-50 204.5 320 41.2
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 6.1e-50 202.2 271 44.6
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 1.8e-49 200.7 271 44.3
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 6.7e-49 198.7 311 43.4
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 7.4e-48 195.3 252 45.6
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 9.7e-48 194.9 343 37.0
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 2.8e-47 193.4 185 56.2
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 1.5e-45 187.6 185 55.1
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 7.9e-42 175.3 278 40.3
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 4.1e-38 162.9 252 41.3
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 7.7e-37 158.7 248 41.1
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 6.5e-36 155.6 140 55.7
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 3.0e-33 146.7 171 46.8
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 9.7e-32 141.7 163 47.2
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 6.3e-31 139.0 229 39.7
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 4.1e-30 136.3 260 37.3
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 5.9e-29 132.5 201 40.3
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 8.8e-25 118.6 128 49.2
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 2.0e-21 107.5 125 45.6
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 7.7e-21 105.5 118 50.0
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 1.5e-16 91.3 171 34.5
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 2.0e-13 80.9 78 56.4
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 2.7e-13 80.5 95 47.4
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 3.5e-13 80.1 62 64.5
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 1.2e-08 65.1 110 39.1
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 2.6e-08 63.9 93 41.9
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 3.2e-06 57.0 68 42.6
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 4.1e-06 56.6 90 40.0


User provided reference genes

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