Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 8.9e-177 623.6 346 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 3.0e-100 369.4 270 70.7
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 4.8e-98 362.1 285 70.9
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.2e-91 340.9 250 68.4
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 1.1e-89 334.3 268 69.0
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 1.4e-89 334.0 294 66.7
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 2.4e-89 333.2 274 69.7
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 2.4e-89 333.2 274 70.1
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.4e-89 333.2 294 66.7
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 7.0e-89 331.6 274 70.1
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 7.0e-89 331.6 262 72.5
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 9.2e-89 331.3 318 64.5
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.2e-88 330.9 284 68.0
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 2.0e-88 330.1 276 70.3
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 3.5e-88 329.3 260 72.7
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.5e-88 329.3 251 73.3
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 3.5e-88 329.3 270 68.9
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 4.5e-88 328.9 300 64.3
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 4.5e-88 328.9 265 71.7
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 4.5e-88 328.9 308 63.6
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 5.9e-88 328.6 325 62.8
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 5.9e-88 328.6 319 63.6
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.8e-88 328.2 251 74.5
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 7.8e-88 328.2 317 63.1
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 1.3e-87 327.4 251 73.3
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.7e-87 327.0 293 66.2
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.7e-87 327.0 276 66.7
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 1.7e-87 327.0 292 64.7
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 2.3e-87 326.6 261 72.8
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.3e-87 326.6 251 72.9
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 2.3e-87 326.6 282 67.4
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 2.3e-87 326.6 271 69.0
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 2.9e-87 326.2 251 72.9
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 2.9e-87 326.2 276 66.7
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 2.9e-87 326.2 316 63.3
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 3.8e-87 325.9 318 63.2
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 3.8e-87 325.9 277 69.0
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 3.8e-87 325.9 292 64.4
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 5.0e-87 325.5 269 68.4
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 5.0e-87 325.5 303 64.7
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 6.6e-87 325.1 249 71.9
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 6.6e-87 325.1 269 68.8
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 6.6e-87 325.1 250 65.2
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 8.6e-87 324.7 261 69.3
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 8.6e-87 324.7 252 73.0
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.1e-86 324.3 251 72.9
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 1.1e-86 324.3 277 68.6
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 1.5e-86 323.9 314 62.4
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.9e-86 323.6 249 73.1
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 1.9e-86 323.6 315 62.5
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.9e-86 323.6 282 66.3
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.9e-86 323.6 251 70.9
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 2.5e-86 323.2 308 62.0
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 3.3e-86 322.8 250 72.8
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 3.3e-86 322.8 295 63.7
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.3e-86 322.8 314 62.7
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 4.3e-86 322.4 251 72.1
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 5.6e-86 322.0 295 65.4
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 5.6e-86 322.0 250 71.6
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 5.6e-86 322.0 279 66.7
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 7.3e-86 321.6 262 70.6
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 7.3e-86 321.6 277 67.5
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 7.3e-86 321.6 262 69.1
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 9.5e-86 321.2 251 71.3
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 9.5e-86 321.2 305 62.3
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 1.6e-85 320.5 265 69.4
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.6e-85 320.5 251 72.1
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 1.6e-85 320.5 251 71.7
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.6e-85 320.5 272 66.5
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 2.1e-85 320.1 323 59.4
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 2.1e-85 320.1 323 59.4
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 2.1e-85 320.1 276 65.9
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 2.1e-85 320.1 308 64.0
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.8e-85 319.7 327 59.3
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 3.6e-85 319.3 323 60.7
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 3.6e-85 319.3 251 71.7
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 3.6e-85 319.3 305 61.6
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 4.7e-85 318.9 280 66.4
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 4.7e-85 318.9 252 70.6
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 6.1e-85 318.5 278 65.5
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 6.1e-85 318.5 248 72.2
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 6.1e-85 318.5 258 70.2
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 6.1e-85 318.5 337 58.2
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 8.0e-85 318.2 310 62.9
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 1.0e-84 317.8 263 69.2
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 1.0e-84 317.8 282 65.2
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 1.4e-84 317.4 326 59.5
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.4e-84 317.4 327 61.2
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 1.4e-84 317.4 316 62.0
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.8e-84 317.0 330 60.6
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.3e-84 316.6 251 71.3
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 2.3e-84 316.6 251 71.3
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 3.0e-84 316.2 302 62.3
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 3.0e-84 316.2 323 58.8
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 3.0e-84 316.2 323 58.8
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 3.0e-84 316.2 293 62.8
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 4.0e-84 315.8 272 65.8
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 4.0e-84 315.8 249 72.7
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 6.8e-84 315.1 323 61.0
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 8.9e-84 314.7 315 61.9
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 8.9e-84 314.7 272 66.5
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 8.9e-84 314.7 262 67.9
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.2e-83 314.3 248 71.4
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.2e-83 314.3 251 70.5
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.5e-83 313.9 249 71.5
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 2.0e-83 313.5 276 66.7
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 2.6e-83 313.2 310 61.6
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 2.6e-83 313.2 323 60.4
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.6e-83 313.2 251 70.5
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 3.4e-83 312.8 251 70.9
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 5.8e-83 312.0 293 62.8
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 7.5e-83 311.6 323 60.1
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 7.5e-83 311.6 293 62.8
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 7.5e-83 311.6 261 68.2
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 9.8e-83 311.2 261 68.2
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 9.8e-83 311.2 261 68.2
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 9.8e-83 311.2 254 69.7
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 9.8e-83 311.2 272 65.8
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 9.8e-83 311.2 297 63.6
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.7e-82 310.5 245 72.2
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 1.7e-82 310.5 248 70.2
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 2.2e-82 310.1 293 62.5
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 2.2e-82 310.1 246 70.3
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.2e-82 310.1 261 67.8
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 2.2e-82 310.1 282 65.2
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 2.9e-82 309.7 322 59.6
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.9e-82 309.7 279 59.5
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 3.7e-82 309.3 262 67.6
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 8.3e-82 308.1 278 64.4
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 8.3e-82 308.1 255 71.0
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.4e-81 307.4 269 65.1
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.9e-81 307.0 248 69.8
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.9e-81 307.0 248 69.8
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 1.9e-81 307.0 244 70.9
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 3.2e-81 306.2 319 58.9
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 3.2e-81 306.2 319 58.9
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 2.0e-80 303.5 248 69.0
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.0e-80 303.5 258 70.2
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 4.6e-80 302.4 281 62.3
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 1.0e-79 301.2 230 73.0
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.3e-79 300.8 265 63.8
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 3.0e-79 299.7 275 64.4
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 8.6e-79 298.1 225 76.0
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 1.5e-78 297.4 292 60.3
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 1.9e-78 297.0 247 69.6
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 9.5e-78 294.7 224 73.7
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 5.2e-76 288.9 237 68.4
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 8.9e-76 288.1 224 72.3
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 4.7e-69 265.8 308 56.8
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 8.9e-68 261.5 297 49.2
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 1.5e-67 260.8 318 55.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 6.0e-64 248.8 277 49.1
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 2.3e-63 246.9 196 75.5
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.9e-62 243.8 214 60.7
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 3.3e-62 243.0 198 72.7
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.4e-60 236.9 262 55.7
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.4e-60 236.9 262 55.7
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 4.0e-60 236.1 273 51.3
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 4.0e-60 236.1 325 51.7
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 2.2e-58 230.3 191 71.7
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 4.3e-54 216.1 239 62.8
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 5.6e-54 215.7 186 73.1
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 4.9e-42 176.0 145 61.4
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.3e-39 167.9 118 68.6
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 2.1e-37 160.6 146 57.5
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 9.0e-36 155.2 165 63.0
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.6e-35 153.7 118 62.7
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.8e-34 149.8 144 66.0
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 1.9e-30 137.5 85 75.3
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.4e-28 130.6 83 74.7
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 6.9e-28 129.0 98 63.3
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.6e-27 127.1 108 65.7
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 1.3e-26 124.8 83 67.5
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 6.7e-23 112.5 108 75.9
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 3.1e-20 103.6 96 54.2
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 5.3e-20 102.8 253 32.8
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 1.8e-15 87.8 83 72.3
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 9.7e-14 82.0 157 37.6
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.3e-13 81.6 126 51.6
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 4.8e-13 79.7 85 70.6


User provided reference genes

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