Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 3.7e-174 614.8 307 100.0
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 2.2e-102 376.3 306 61.1
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 7.4e-90 334.7 291 55.0
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 1.6e-89 333.6 291 54.6
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 2.1e-89 333.2 299 54.5
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 3.6e-89 332.4 291 54.3
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 3.6e-89 332.4 297 55.6
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 4.8e-89 332.0 295 54.6
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 6.2e-89 331.6 300 54.7
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 6.2e-89 331.6 291 54.3
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 1.4e-88 330.5 298 56.0
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 1.8e-88 330.1 298 55.0
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 2.4e-88 329.7 298 55.4
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 6.9e-88 328.2 298 53.4
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.5e-87 325.5 299 53.8
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 5.8e-87 325.1 299 53.5
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 7.6e-87 324.7 298 53.7
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 1.3e-86 323.9 281 55.5
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 2.9e-86 322.8 296 53.7
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 3.8e-86 322.4 300 53.0
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.8e-86 322.4 297 53.9
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 1.4e-85 320.5 318 51.9
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 5.5e-85 318.5 297 53.5
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 5.5e-85 318.5 303 54.8
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 7.1e-85 318.2 282 55.0
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 9.3e-85 317.8 300 54.3
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 9.3e-85 317.8 299 52.5
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 1.6e-84 317.0 298 52.7
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 2.7e-84 316.2 299 52.2
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 6.0e-84 315.1 299 53.2
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 1.0e-83 314.3 299 53.8
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 1.0e-83 314.3 291 53.3
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 1.0e-83 314.3 299 54.2
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 1.0e-83 314.3 300 53.7
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 1.3e-83 313.9 298 52.7
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 2.3e-83 313.2 299 53.5
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 3.0e-83 312.8 300 52.3
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 3.9e-83 312.4 300 53.3
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 5.1e-83 312.0 296 51.7
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 5.1e-83 312.0 297 52.5
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 6.7e-83 311.6 285 53.7
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 6.7e-83 311.6 297 51.2
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 1.1e-82 310.8 277 57.0
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 1.5e-82 310.5 301 53.2
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.5e-82 310.5 289 55.7
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 1.9e-82 310.1 301 53.2
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 1.9e-82 310.1 301 51.8
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.9e-82 310.1 297 52.5
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 3.3e-82 309.3 299 52.2
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 3.3e-82 309.3 297 52.5
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 4.3e-82 308.9 299 52.2
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 7.4e-82 308.1 300 52.7
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 7.4e-82 308.1 301 51.8
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 9.6e-82 307.8 299 52.5
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 9.6e-82 307.8 300 52.7
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 9.6e-82 307.8 300 52.3
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 1.3e-81 307.4 300 53.0
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 1.3e-81 307.4 298 51.3
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 1.3e-81 307.4 293 51.9
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 2.1e-81 306.6 301 53.2
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 2.1e-81 306.6 303 51.8
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.1e-81 306.6 276 54.0
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 2.8e-81 306.2 276 54.7
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 3.7e-81 305.8 288 54.2
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 8.1e-81 304.7 305 53.1
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 8.1e-81 304.7 299 52.5
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 1.1e-80 304.3 297 51.9
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 1.4e-80 303.9 299 50.8
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 1.4e-80 303.9 287 54.0
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.8e-80 303.5 283 53.4
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 1.8e-80 303.5 298 54.0
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 2.4e-80 303.1 303 52.1
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 5.3e-80 302.0 305 51.8
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 9.0e-80 301.2 302 52.3
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 9.0e-80 301.2 287 53.7
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 1.2e-79 300.8 304 52.0
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 2.6e-79 299.7 300 52.3
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 4.5e-79 298.9 299 51.2
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 1.0e-78 297.7 306 51.6
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 1.7e-78 297.0 313 51.4
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 2.9e-78 296.2 302 52.6
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 1.4e-77 293.9 300 52.0
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 1.6e-76 290.4 338 47.3
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.0e-75 287.7 320 47.2
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 1.8e-75 287.0 259 57.1
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 3.3e-74 282.7 320 46.9
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 1.1e-69 267.7 252 54.0
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.1e-69 267.7 317 45.1
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 1.4e-69 267.3 247 55.1
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 5.5e-69 265.4 249 53.8
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 1.6e-68 263.8 246 52.8
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 2.1e-68 263.5 264 52.7
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 7.9e-68 261.5 248 55.6
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 9.7e-66 254.6 296 46.6
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 4.5e-63 245.7 297 45.8
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 1.0e-62 244.6 186 61.8
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 3.8e-62 242.7 201 57.7
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 2.1e-60 236.9 227 51.1
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 3.6e-60 236.1 272 47.4
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 4.5e-55 219.2 221 51.1
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 7.7e-55 218.4 240 47.1
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 1.0e-54 218.0 217 51.2
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 2.5e-53 213.4 221 50.2
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 7.2e-53 211.8 248 46.8
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 2.3e-51 206.8 148 63.5
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.5e-50 204.1 249 44.6
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 3.3e-50 203.0 220 46.8
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 1.6e-47 194.1 294 40.8
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 8.8e-43 178.3 212 48.1
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 4.4e-42 176.0 186 50.0
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.2e-41 173.7 385 31.9
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 2.8e-41 173.3 111 68.5
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.7e-39 166.8 96 79.2
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.3e-38 164.5 101 73.3
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 5.0e-38 162.5 161 52.2
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 7.2e-37 158.7 182 47.8
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 4.0e-35 152.9 125 60.0
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 6.8e-35 152.1 95 71.6
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 3.1e-32 143.3 180 45.0
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 2.5e-29 133.7 247 37.2
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 1.5e-26 124.4 171 44.4
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 2.6e-26 123.6 150 45.3
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 1.3e-25 121.3 204 36.8
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 1.7e-25 120.9 144 50.7
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 6.3e-25 119.0 337 30.0
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 3.1e-24 116.7 129 47.3
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 1.9e-21 107.5 81 60.5
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 5.6e-21 105.9 71 63.4
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 2.0e-18 97.4 147 39.5
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 6.8e-11 72.4 106 37.7
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 5.4e-08 62.8 49 57.1
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 1.2e-07 61.6 96 39.6
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 3.9e-06 56.6 31 71.0
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 8.6e-06 55.5 92 40.2


User provided reference genes

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