Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0041s0060 Marchantia polymorpha HOM05D005778 ORTHO05D007245 0.0e+00 1516.1 831 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2963 Anthoceros agrestis HOM05D005778 ORTHO05D007245 8.3e-96 355.9 336 49.4
Pp3c5_3310 Physcomitrium patens HOM05D005778 ORTHO05D007245 6.0e-86 323.2 339 46.0
Ciclev10025290m.g Citrus clementina HOM05D005778 ORTHO05D007245 4.9e-80 303.5 345 43.5
Gohir.A10G082700 Gossypium hirsutum HOM05D005778 ORTHO05D007245 2.3e-77 294.7 343 44.3
Thecc.01G117000 Theobroma cacao HOM05D005778 ORTHO05D007245 3.9e-77 293.9 342 43.9
HanXRQChr09g0254171 Helianthus annuus HOM05D005778 ORTHO05D007245 6.6e-77 293.1 348 41.7
Atru.chr4.723 Acer truncatum HOM05D005778 ORTHO05D007245 8.7e-77 292.7 342 43.3
Actinidia31890 Actinidia chinensis HOM05D005778 ORTHO05D007245 1.5e-76 292.0 332 43.7
Eucgr.I00295 Eucalyptus grandis HOM05D005778 ORTHO05D007245 1.5e-76 292.0 341 43.7
Gohir.D10G105000 Gossypium hirsutum HOM05D005778 ORTHO05D007245 1.5e-76 292.0 343 44.6
Lsat_1_v5_gn_4_138380 Lactuca sativa HOM05D005778 ORTHO05D007245 1.5e-76 292.0 348 42.5
Gorai.011G114700 Gossypium raimondii HOM05D005778 ORTHO05D007245 2.5e-76 291.2 343 44.6
TAR628G0341 Trochodendron aralioides HOM05D005778 ORTHO05D007245 4.3e-76 290.4 345 44.1
MD15G1335700 Malus domestica HOM05D005778 ORTHO05D007245 7.3e-76 289.7 342 43.9
Prupe.6G166800 Prunus persica HOM05D005778 ORTHO05D007245 1.6e-75 288.5 342 43.6
TWI79G0191 Tripterygium wilfordii HOM05D005778 ORTHO05D007245 2.1e-75 288.1 345 43.5
Sc03g0004580 Simmondsia chinensis HOM05D005778 ORTHO05D007245 3.6e-75 287.3 336 42.6
GSVIVG01022267001 Vitis vinifera HOM05D005778 ORTHO05D007245 3.6e-75 287.3 345 42.6
CiPaw.03G131700 Carya illinoinensis HOM05D005778 ORTHO05D007245 6.2e-75 286.6 329 42.9
CSS0023800 Camellia sinensis var. sinensis HOM05D005778 ORTHO05D007245 8.1e-75 286.2 327 44.0
Rhsim10G0147200 Rhododendron simsii HOM05D005778 ORTHO05D007245 1.8e-74 285.0 340 42.4
Zm00001eb068550 Zea mays HOM05D005778 ORTHO05D007245 5.3e-74 283.5 336 42.9
SGA_v2.0_scaffold47G17685 Striga asiatica HOM05D005778 ORTHO05D007245 6.9e-74 283.1 331 41.7
CANSAT01G2349 Cannabis sativa HOM05D005778 ORTHO05D007245 2.0e-73 281.6 329 43.5
Medtr8g092300 Medicago truncatula HOM05D005778 ORTHO05D007245 2.0e-73 281.6 326 43.3
Psat7g049960 Pisum sativum HOM05D005778 ORTHO05D007245 3.4e-73 280.8 326 43.6
Sabra07G0065400 Salix brachista HOM05D005778 ORTHO05D007245 4.5e-73 280.4 331 44.4
PGR119G1966 Punica granatum HOM05D005778 ORTHO05D007245 9.9e-73 279.3 340 41.8
Dinv16426 Davidia involucrata HOM05D005778 ORTHO05D007245 1.3e-72 278.9 330 43.0
Potri.007G077400 Populus trichocarpa HOM05D005778 ORTHO05D007245 1.3e-72 278.9 324 44.4
Migut.L00055 Erythranthe guttata HOM05D005778 ORTHO05D007245 1.7e-72 278.5 326 42.3
PSO170G4940 Papaver somniferum HOM05D005778 ORTHO05D007245 1.7e-72 278.5 340 41.5
ClCG01G015860 Citrullus lanatus HOM05D005778 ORTHO05D007245 2.2e-72 278.1 329 43.5
CsaV3_6G042140 Cucumis sativus L. HOM05D005778 ORTHO05D007245 2.2e-72 278.1 330 43.0
TPR.G2233 Trifolium pratense HOM05D005778 ORTHO05D007245 2.2e-72 278.1 326 42.3
CDE07G0129 Ceratophyllum demersum HOM05D005778 ORTHO05D007245 3.8e-72 277.3 343 41.4
ATR0800G169 Amborella trichopoda HOM05D005778 ORTHO05D007245 6.4e-72 276.6 342 41.5
SalBow5G2484 Salvia bowleyana HOM05D005778 ORTHO05D007245 6.4e-72 276.6 326 42.0
Cc07_g16660 Coffea canephora HOM05D005778 ORTHO05D007245 8.4e-72 276.2 328 42.7
Lj4g0013346 Lotus japonicus HOM05D005778 ORTHO05D007245 1.1e-71 275.8 326 43.3
Prupe.1G550600 Prunus persica HOM05D005778 ORTHO05D007245 1.4e-71 275.4 348 41.7
Cfa002785 Carpinus fangiana HOM05D005778 ORTHO05D007245 1.9e-71 275.0 329 41.9
FvH4_1g23210 Fragaria vesca HOM05D005778 ORTHO05D007245 5.4e-71 273.5 342 41.8
HPP92_017324 Vanilla planifolia HOM05D005778 ORTHO05D007245 5.4e-71 273.5 323 43.3
VMungo0251G2366 Vigna mungo HOM05D005778 ORTHO05D007245 1.6e-70 271.9 327 41.9
arahy.Tifrunner.gnm1.ann1.A9RKWD Arachis hypogaea HOM05D005778 ORTHO05D007245 3.5e-70 270.8 326 42.3
Manes.12G145400 Manihot esculenta HOM05D005778 ORTHO05D007245 4.6e-70 270.4 326 42.0
Nn5g28812 Nelumbo nucifera HOM05D005778 ORTHO05D007245 4.6e-70 270.4 323 42.7
MD15G1404100 Malus domestica HOM05D005778 ORTHO05D007245 6.0e-70 270.0 333 42.0
Glyma.05G186200 Glycine max HOM05D005778 ORTHO05D007245 7.9e-70 269.6 326 42.9
Sed0016319 Sechium edule HOM05D005778 ORTHO05D007245 1.3e-69 268.9 330 42.1
FAN19G0143 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.8e-69 268.5 350 41.1
arahy.Tifrunner.gnm1.ann1.2KBC6S Arachis hypogaea HOM05D005778 ORTHO05D007245 2.3e-69 268.1 326 41.7
Ca_17674_v3 Cicer arietinum L. HOM05D005778 ORTHO05D007245 2.3e-69 268.1 362 38.7
Nitab4.5_0000184g0070 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.3e-69 268.1 349 39.3
THA.LOC104804137 Tarenaya hassleriana HOM05D005778 ORTHO05D007245 8.7e-69 266.2 323 41.5
DCAR_016672 Daucus carota HOM05D005778 ORTHO05D007245 1.1e-68 265.8 342 41.2
Phvul.002G267400 Phaseolus vulgaris HOM05D005778 ORTHO05D007245 1.5e-68 265.4 325 41.5
Sopen04g022870 Solanum pennellii HOM05D005778 ORTHO05D007245 2.5e-68 264.6 327 40.7
Aqoxy5G02041 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 5.6e-68 263.5 345 39.7
Solyc04g051490.3 Solanum lycopersicum HOM05D005778 ORTHO05D007245 5.6e-68 263.5 325 40.6
unitig_37.g12529 Utricularia gibba HOM05D005778 ORTHO05D007245 5.6e-68 263.5 335 39.7
Lalb_Chr12g0203421 Lupinus albus HOM05D005778 ORTHO05D007245 9.6e-68 262.7 323 40.6
RcHm_v2.0_Chr7g0226611 Rosa chinensis HOM05D005778 ORTHO05D007245 1.8e-66 258.5 345 41.2
QL06p031408 Quercus lobata HOM05D005778 ORTHO05D007245 3.1e-66 257.7 405 35.3
Peaxi162Scf00025g03317 Petunia axillaris HOM05D005778 ORTHO05D007245 4.0e-66 257.3 361 37.4
BolC7t42688H Brassica oleracea HOM05D005778 ORTHO05D007245 5.3e-66 256.9 344 39.0
RcHm_v2.0_Chr2g0117911 Rosa chinensis HOM05D005778 ORTHO05D007245 6.9e-66 256.5 342 40.4
vmacro12878 Vaccinium macrocarpon HOM05D005778 ORTHO05D007245 2.6e-65 254.6 378 36.0
Os04g0648700 Oryza sativa ssp. japonica HOM05D005778 ORTHO05D007245 3.4e-65 254.2 339 39.2
CAN.G860.4 Capsicum annuum HOM05D005778 ORTHO05D007245 4.5e-65 253.8 326 39.6
Lj4C861G1 Lonicera japonica HOM05D005778 ORTHO05D007245 4.5e-65 253.8 401 35.7
Hund19626 Selenicereus undatus HOM05D005778 ORTHO05D007245 7.6e-65 253.1 343 38.8
Thhalv10000104m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 2.9e-64 251.1 323 39.6
Sp4g01220 Schrenkiella parvula HOM05D005778 ORTHO05D007245 4.2e-63 247.3 322 39.4
Aqoxy4G02517 Aquilegia oxysepala HOM05D005778 ORTHO05D007245 5.5e-63 246.9 344 37.8
MSTRG.15762 Avicennia marina HOM05D005778 ORTHO05D007245 5.5e-63 246.9 296 41.6
CARHR113310 Cardamine hirsuta HOM05D005778 ORTHO05D007245 1.2e-62 245.7 322 39.8
FAN23G1488 Fragaria x ananassa HOM05D005778 ORTHO05D007245 3.5e-62 244.2 319 41.1
ECA238G1732 Erigeron canadensis HOM05D005778 ORTHO05D007245 7.9e-62 243.0 345 38.8
BcaB08g35041 Brassica carinata HOM05D005778 ORTHO05D007245 1.3e-61 242.3 325 38.5
BolC4t26687H Brassica oleracea HOM05D005778 ORTHO05D007245 1.8e-61 241.9 333 38.1
BraA09t41166Z Brassica rapa HOM05D005778 ORTHO05D007245 2.3e-61 241.5 322 38.5
BcaC07g41093 Brassica carinata HOM05D005778 ORTHO05D007245 8.7e-61 239.6 322 38.2
BolC8t51659H Brassica oleracea HOM05D005778 ORTHO05D007245 8.7e-61 239.6 322 38.2
BcaC02g08761 Brassica carinata HOM05D005778 ORTHO05D007245 1.9e-60 238.4 332 37.7
C04p50950 Brassica napus HOM05D005778 ORTHO05D007245 1.9e-60 238.4 332 37.7
C08p40960 Brassica napus HOM05D005778 ORTHO05D007245 1.9e-60 238.4 322 37.6
Carub.0004s0131 Capsella rubella HOM05D005778 ORTHO05D007245 1.9e-60 238.4 322 38.8
SMO352G0072 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.9e-60 238.4 292 39.4
A09p57740 Brassica napus HOM05D005778 ORTHO05D007245 2.5e-60 238.0 321 38.0
AL4G11490 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 5.6e-60 236.9 322 39.4
AT2G22140 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.6e-59 235.3 322 38.8
CARHR112840 Cardamine hirsuta HOM05D005778 ORTHO05D007245 2.8e-59 234.6 328 37.8
Aa31LG7G14570 Aethionema arabicum HOM05D005778 ORTHO05D007245 1.8e-58 231.9 344 37.5
BraA04t17279Z Brassica rapa HOM05D005778 ORTHO05D007245 5.3e-58 230.3 354 36.4
Carub.0004s0085 Capsella rubella HOM05D005778 ORTHO05D007245 5.3e-58 230.3 344 34.6
A04p16440 Brassica napus HOM05D005778 ORTHO05D007245 6.9e-58 229.9 314 38.9
AL4G11110 Arabidopsis lyrata HOM05D005778 ORTHO05D007245 5.8e-57 226.9 320 35.6
BcaB06g27789 Brassica carinata HOM05D005778 ORTHO05D007245 1.3e-56 225.7 318 38.4
AT2G21800 Arabidopsis thaliana HOM05D005778 ORTHO05D007245 1.7e-56 225.3 321 35.8
Thhalv10000122m.g Eutrema salsugineum HOM05D005778 ORTHO05D007245 2.9e-56 224.6 314 36.6
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 6.5e-56 223.4 329 38.3
Sp4g00940 Schrenkiella parvula HOM05D005778 ORTHO05D007245 1.8e-53 215.3 317 37.9
MELO3C007452.2 Cucumis melo HOM05D005778 ORTHO05D007245 8.7e-53 213.0 372 35.2
AUR62003644 Chenopodium quinoa HOM05D005778 ORTHO05D007245 1.9e-52 211.8 325 36.9
CBR_g21043 Chara braunii HOM05D005778 ORTHO05D007245 2.2e-51 208.4 391 33.2
Haze_25082 Corylus avellana HOM05D005778 ORTHO05D007245 3.4e-49 201.1 414 32.1
FvH4_5g31350 Fragaria vesca HOM05D005778 ORTHO05D007245 2.1e-46 191.8 289 37.0
Oeu001980.1 Olea europaea HOM05D005778 ORTHO05D007245 1.4e-45 189.1 392 29.1
FAN28G2237 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.3e-43 182.6 249 39.0
SMO288G0013 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.7e-43 182.2 296 34.8
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 5.3e-42 177.2 304 34.2
COL.COLO4_03471 Corchorus olitorius HOM05D005778 ORTHO05D007245 4.4e-36 157.5 150 49.3
Cpa.g.sc72.53 Carica papaya HOM05D005778 ORTHO05D007245 1.2e-33 149.4 196 39.3
Nitab4.5_0011929g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.9e-32 144.8 248 33.5
FAN26G2893 Fragaria x ananassa HOM05D005778 ORTHO05D007245 8.5e-32 143.3 283 31.4
Glyma.08G144700 Glycine max HOM05D005778 ORTHO05D007245 1.4e-31 142.5 198 39.4
Nitab4.5_0021115g0010 Nicotiana tabacum HOM05D005778 ORTHO05D007245 2.7e-30 138.3 205 35.1
Cpa.g.sc72.54 Carica papaya HOM05D005778 ORTHO05D007245 8.2e-27 126.7 127 44.9
SEGI_24036 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 1.9e-23 115.5 95 57.9
PGSC0003DMG400019704 Solanum tuberosum HOM05D005778 ORTHO05D007245 2.0e-12 79.0 74 48.6
SEGI_25471 Sequoiadendron giganteum HOM05D005778 ORTHO05D007245 2.6e-12 78.6 59 61.0
Hma1.2p1_0070F.1_g037570 Hydrangea macrophylla HOM05D005778 ORTHO05D007245 6.3e-11 73.9 82 40.2
SalBow5G4900 Salvia bowleyana HOM05D005778 ORTHO05D007245 8.3e-11 73.6 193 30.1
FAN18G1125 Fragaria x ananassa HOM05D005778 ORTHO05D007245 1.8e-10 72.4 79 41.8
SMO352G0093 Selaginella moellendorffii HOM05D005778 ORTHO05D007245 1.5e-07 62.8 56 55.4


User provided reference genes

Program Settings