Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0119 Marchantia polymorpha HOM05D067070 ORTHO05D048796 0.0e+00 1925.2 973 100.0
Pp3c3_2900 Physcomitrium patens HOM05D067070 ORTHO05D048796 1.0e-193 681.4 1000 43.4
Pp3c16_16740 Physcomitrium patens HOM05D019012 ORTHO05D020434 3.1e-25 121.7 280 32.1
Pp3c16_16743 Physcomitrium patens HOM05D019012 ORTHO05D020434 3.1e-25 121.7 280 32.1
Pp3c27_2010 Physcomitrium patens HOM05D019012 ORTHO05D020434 1.3e-23 116.3 280 31.8
SEGI_20805 Sequoiadendron giganteum HOM05D019012 ORTHO05D020434 3.2e-22 111.7 270 29.6
Mapoly0051s0016 Marchantia polymorpha HOM05D000590 ORTHO05D005739 3.1e-17 95.1 176 33.0
MCO06G219 Micromonas commoda HOM05D000104 ORTHO05D003467 3.1e-17 95.1 150 35.3
CDE06G2342 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 1.7e-15 89.4 161 32.9
Pp3c5_20190 Physcomitrium patens HOM05D000590 ORTHO05D005739 5.0e-15 87.8 146 33.6
ATR0824G108 Amborella trichopoda HOM05D000590 ORTHO05D005739 6.5e-15 87.4 145 35.2
Pp3c6_7710 Physcomitrium patens HOM05D000590 ORTHO05D005739 8.5e-15 87.0 186 32.8
Cre03.g197700 Chlamydomonas reinhardtii HOM05D000590 ORTHO05D005739 1.1e-14 86.7 139 32.4
Os09g0134500 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D005739 1.9e-14 85.9 143 35.0
Dinv44239 Davidia involucrata HOM05D000590 ORTHO05D005739 3.2e-14 85.1 161 32.3
Actinidia32949 Actinidia chinensis HOM05D000590 ORTHO05D005739 7.2e-14 84.0 156 33.3
Hma1.2p1_0412F.1_g147170 Hydrangea macrophylla HOM05D000590 ORTHO05D005739 7.2e-14 84.0 153 32.7
Zm00001eb308480 Zea mays HOM05D000590 ORTHO05D005739 7.2e-14 84.0 140 35.0
Actinidia35907 Actinidia chinensis HOM05D000590 ORTHO05D005739 1.6e-13 82.8 159 32.1
SMO236G0090 Selaginella moellendorffii HOM05D000590 ORTHO05D005739 1.6e-13 82.8 147 32.0
Cpa.g.sc50.132 Carica papaya HOM05D000590 ORTHO05D005739 2.7e-13 82.0 144 31.9
CSS0029067 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D005739 3.6e-13 81.6 158 32.9
Cre06.g300850 Chlamydomonas reinhardtii HOM05D019012 ORTHO05D020434 3.6e-13 81.6 137 28.5
TAR362G0932 Trochodendron aralioides HOM05D000590 ORTHO05D005739 3.6e-13 81.6 155 32.3
CsaV3_1G037770 Cucumis sativus L. HOM05D000329 ORTHO05D000833 7.9e-13 80.5 145 29.7
Eucgr.H00451 Eucalyptus grandis HOM05D000590 ORTHO05D005739 7.9e-13 80.5 168 32.1
arahy.Tifrunner.gnm1.ann1.631JZ3 Arachis hypogaea HOM05D000590 ORTHO05D005739 1.0e-12 80.1 150 34.0
arahy.Tifrunner.gnm1.ann1.NCWU1I Arachis hypogaea HOM05D000590 ORTHO05D005739 1.0e-12 80.1 150 34.0
AagrBONN_evm.TU.Sc2ySwM_344.772 Anthoceros agrestis HOM05D000590 ORTHO05D005739 1.4e-12 79.7 135 31.1
Aqoxy2G04044 Aquilegia oxysepala HOM05D000590 ORTHO05D005739 2.3e-12 79.0 140 30.0
Lj1g0024416 Lotus japonicus HOM05D000590 ORTHO05D005739 2.3e-12 79.0 148 32.4
THA.LOC104800910 Tarenaya hassleriana HOM05D000590 ORTHO05D005739 3.0e-12 78.6 137 30.7
GSVIVG01013555001 Vitis vinifera HOM05D000590 ORTHO05D005739 3.0e-12 78.6 161 31.7
MELO3C021809.2 Cucumis melo HOM05D000329 ORTHO05D000833 3.9e-12 78.2 145 29.0
Lalb_Chr17g0336461 Lupinus albus HOM05D000590 ORTHO05D005739 3.9e-12 78.2 147 31.3
Sed0011729 Sechium edule HOM05D000329 ORTHO05D000833 5.1e-12 77.8 150 32.0
Atru.chr10.658 Acer truncatum HOM05D000329 ORTHO05D000833 8.8e-12 77.0 142 32.4
ClCG01G008900 Citrullus lanatus HOM05D000329 ORTHO05D000833 8.8e-12 77.0 145 33.8
Cfa008549 Carpinus fangiana HOM05D000590 ORTHO05D005739 1.1e-11 76.6 141 30.5
PSO017G6033 Papaver somniferum HOM05D000590 ORTHO05D005739 1.1e-11 76.6 161 31.7
Sed0020772 Sechium edule HOM05D000329 ORTHO05D000833 1.1e-11 76.6 149 29.5
Oeu029902.1 Olea europaea HOM05D000590 ORTHO05D005739 2.0e-11 75.9 150 31.3
PSO675G4267 Papaver somniferum HOM05D000590 ORTHO05D005739 2.0e-11 75.9 161 31.7
Lalb_Chr04g0258071 Lupinus albus HOM05D000590 ORTHO05D005739 3.3e-11 75.1 148 31.1
Medtr7g021365 Medicago truncatula HOM05D000590 ORTHO05D005739 3.3e-11 75.1 143 31.5
Atru.chr3.1727 Acer truncatum HOM05D000590 ORTHO05D005739 4.3e-11 74.7 160 30.0
Glyma.08G258500 Glycine max HOM05D000590 ORTHO05D005739 7.4e-11 73.9 148 32.4
AL1G15760 Arabidopsis lyrata HOM05D000590 ORTHO05D005739 9.7e-11 73.6 142 28.9
AT1G05830 Arabidopsis thaliana HOM05D000590 ORTHO05D005739 9.7e-11 73.6 142 28.2
Phvul.008G018500 Phaseolus vulgaris HOM05D000590 ORTHO05D005739 9.7e-11 73.6 148 33.8
Sp1g04640 Schrenkiella parvula HOM05D000590 ORTHO05D005739 9.7e-11 73.6 155 27.1
CBR_g9119 Chara braunii HOM05D000409 ORTHO05D000184 1.3e-10 73.2 151 33.1
VMungo1383G1517 Vigna mungo HOM05D000590 ORTHO05D005739 1.3e-10 73.2 149 33.6
FAN17G1987 Fragaria x ananassa HOM05D000590 ORTHO05D005739 1.7e-10 72.8 144 30.6
TPR.G2958 Trifolium pratense HOM05D000590 ORTHO05D005739 1.7e-10 72.8 144 30.6
TWI63G0312 Tripterygium wilfordii HOM05D000590 ORTHO05D005739 1.7e-10 72.8 140 32.9
MELO3C026117.2 Cucumis melo HOM05D000590 ORTHO05D005739 2.2e-10 72.4 146 29.5
QL05p063086 Quercus lobata HOM05D000329 ORTHO05D000833 2.2e-10 72.4 146 30.1
QL10p044299 Quercus lobata HOM05D000590 ORTHO05D005739 2.2e-10 72.4 153 27.5
CsaV3_6G003090 Cucumis sativus L. HOM05D000590 ORTHO05D005739 2.8e-10 72.0 139 30.2
Thhalv10006646m.g Eutrema salsugineum HOM05D000590 ORTHO05D005739 4.8e-10 71.2 155 27.1
ClCG08G003700 Citrullus lanatus HOM05D000590 ORTHO05D005739 6.3e-10 70.9 146 28.8
FAN07G2789 Fragaria x ananassa HOM05D000590 ORTHO05D005739 6.3e-10 70.9 143 30.1
Gohir.D10G130300 Gossypium hirsutum HOM05D000590 ORTHO05D005739 6.3e-10 70.9 137 29.9
Gorai.011G144000 Gossypium raimondii HOM05D000590 ORTHO05D005739 6.3e-10 70.9 137 29.9
RcHm_v2.0_Chr4g0409981 Rosa chinensis HOM05D000590 ORTHO05D005739 6.3e-10 70.9 144 29.9
Ca_07101_v3 Cicer arietinum L. HOM05D000590 ORTHO05D005739 1.1e-09 70.1 146 32.2
Cfa000753 Carpinus fangiana HOM05D000329 ORTHO05D000833 1.4e-09 69.7 149 28.9
FvH4_4g12210 Fragaria vesca HOM05D000590 ORTHO05D005739 1.4e-09 69.7 144 29.9
Aqoxy1G01547 Aquilegia oxysepala HOM05D000329 ORTHO05D000833 1.8e-09 69.3 150 28.0
Lj2A42T56 Lonicera japonica HOM05D000329 ORTHO05D000833 1.8e-09 69.3 201 26.9
Psat3g189880 Pisum sativum HOM05D000590 ORTHO05D005739 1.8e-09 69.3 144 30.6
CiPaw.10G111200 Carya illinoinensis HOM05D000329 ORTHO05D000833 2.4e-09 68.9 145 29.0
Gohir.A10G136500 Gossypium hirsutum HOM05D000590 ORTHO05D005739 2.4e-09 68.9 137 29.9
Sed0026193 Sechium edule HOM05D000590 ORTHO05D005739 2.4e-09 68.9 150 28.7
TPR.G22902 Trifolium pratense HOM05D000329 ORTHO05D000833 2.4e-09 68.9 186 28.5
TAR362G0314 Trochodendron aralioides HOM05D000329 ORTHO05D000833 2.4e-09 68.9 225 26.2
Manes.08G139400 Manihot esculenta HOM05D000329 ORTHO05D000833 3.1e-09 68.6 179 28.5
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 4.1e-09 68.2 162 27.8
DCAR_023890 Daucus carota HOM05D000590 ORTHO05D005739 4.1e-09 68.2 139 30.9
Gohir.A13G167600 Gossypium hirsutum HOM05D000329 ORTHO05D000833 4.1e-09 68.2 179 27.9
MD13G1279000 Malus domestica HOM05D000590 ORTHO05D005739 4.1e-09 68.2 135 31.1
vmacro19991 Vaccinium macrocarpon HOM05D000329 ORTHO05D000833 4.1e-09 68.2 155 26.5
Carub.0001s0518 Capsella rubella HOM05D000590 ORTHO05D005739 5.3e-09 67.8 155 27.1
Potri.013G046700 Populus trichocarpa HOM05D000329 ORTHO05D000833 5.3e-09 67.8 218 24.8
A09p67280 Brassica napus HOM05D000590 ORTHO05D005739 6.9e-09 67.4 142 26.1
BolC8t52685H Brassica oleracea HOM05D000590 ORTHO05D005739 6.9e-09 67.4 142 26.1
BraA09t42058Z Brassica rapa HOM05D004358 ORTHO05D005739 6.9e-09 67.4 142 26.1
TPR.G6205 Trifolium pratense HOM05D000329 ORTHO05D000833 6.9e-09 67.4 141 29.8
Ciclev10018602m.g Citrus clementina HOM05D000590 ORTHO05D005739 9.1e-09 67.0 139 28.1
Haze_05970 Corylus avellana HOM05D000329 ORTHO05D000833 9.1e-09 67.0 149 28.2
PGR142G3887 Punica granatum HOM05D000329 ORTHO05D000833 9.1e-09 67.0 145 26.9
Sabra13G0042700 Salix brachista HOM05D000329 ORTHO05D000833 9.1e-09 67.0 233 24.0
MD00G1097500 Malus domestica HOM05D000329 ORTHO05D000833 1.2e-08 66.6 162 28.4
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 1.2e-08 66.6 145 26.9
Sabra19G0031700 Salix brachista HOM05D000329 ORTHO05D000833 1.2e-08 66.6 145 26.9
Ah.04g163110 Amaranthus hybridus HOM05D000329 ORTHO05D000833 1.5e-08 66.2 123 30.1
Dinv18443 Davidia involucrata HOM05D000329 ORTHO05D000833 1.5e-08 66.2 132 28.8
Gorai.013G187600 Gossypium raimondii HOM05D000329 ORTHO05D000833 1.5e-08 66.2 179 28.5
Potri.019G018700 Populus trichocarpa HOM05D000329 ORTHO05D000833 1.5e-08 66.2 179 25.7
Ca_02384_v3 Cicer arietinum L. HOM05D000329 ORTHO05D000833 2.0e-08 65.9 153 28.8
AL7G33490 Arabidopsis lyrata HOM05D000329 ORTHO05D000833 2.6e-08 65.5 190 24.2
arahy.Tifrunner.gnm1.ann1.YCYE8Z Arachis hypogaea HOM05D000329 ORTHO05D000833 2.6e-08 65.5 145 26.9
Gohir.D13G173000 Gossypium hirsutum HOM05D000329 ORTHO05D000833 2.6e-08 65.5 179 28.5
Hma1.2p1_0075F.1_g039240 Hydrangea macrophylla HOM05D000329 ORTHO05D000833 2.6e-08 65.5 133 27.8
Prupe.4G102200 Prunus persica HOM05D000329 ORTHO05D000833 2.6e-08 65.5 143 30.1
HPP92_008119 Vanilla planifolia HOM05D000590 ORTHO05D005739 2.6e-08 65.5 147 31.3
AagrBONN_evm.TU.Sc2ySwM_228.1475 Anthoceros agrestis HOM05D000329 ORTHO05D000833 3.4e-08 65.1 141 26.2
AT4G20400 Arabidopsis thaliana HOM05D000329 ORTHO05D000833 4.5e-08 64.7 172 25.6
Duzib128G0509 Durio zibethinus HOM05D000329 ORTHO05D000833 4.5e-08 64.7 132 29.5
Lj6g0009351 Lotus japonicus HOM05D000329 ORTHO05D000833 4.5e-08 64.7 143 28.0
MD10G1241100 Malus domestica HOM05D000329 ORTHO05D000833 4.5e-08 64.7 145 29.0
unitig_748.g7351 Utricularia gibba HOM05D000329 ORTHO05D000833 4.5e-08 64.7 152 30.3
GSVIVG01023517001 Vitis vinifera HOM05D000329 ORTHO05D000833 4.5e-08 64.7 134 30.6
arahy.Tifrunner.gnm1.ann1.WFH4QC Arachis hypogaea HOM05D000329 ORTHO05D000833 5.9e-08 64.3 145 26.9
COL.COLO4_26868 Corchorus olitorius HOM05D000329 ORTHO05D000833 5.9e-08 64.3 144 27.8
TWI15G0317 Tripterygium wilfordii HOM05D000329 ORTHO05D000833 5.9e-08 64.3 145 29.7
Eucgr.D01031 Eucalyptus grandis HOM05D000329 ORTHO05D000833 7.7e-08 63.9 152 30.3
Rhsim05G0172700 Rhododendron simsii HOM05D000329 ORTHO05D000833 1.0e-07 63.5 155 25.2
VMungo1309G1828 Vigna mungo HOM05D000329 ORTHO05D000833 1.0e-07 63.5 151 29.1
Zm00001eb280460 Zea mays HOM05D000329 ORTHO05D000833 1.0e-07 63.5 143 29.4
CARHR227230 Cardamine hirsuta HOM05D000329 ORTHO05D000833 1.3e-07 63.2 148 25.7
Ciclev10014116m.g Citrus clementina HOM05D000329 ORTHO05D000833 1.3e-07 63.2 148 26.4
Thecc.06G005300 Theobroma cacao HOM05D000329 ORTHO05D000833 1.3e-07 63.2 145 26.2
Cpa.g.sc192.23 Carica papaya HOM05D000329 ORTHO05D000833 1.7e-07 62.8 145 27.6
Ciclev10018536m.g Citrus clementina HOM05D000329 ORTHO05D000833 1.7e-07 62.8 174 26.4
COL.COLO4_15474 Corchorus olitorius HOM05D000329 ORTHO05D000833 1.7e-07 62.8 119 30.3
Duzib235G0334 Durio zibethinus HOM05D000329 ORTHO05D000833 1.7e-07 62.8 144 27.8
Lj5g0015689 Lotus japonicus HOM05D000329 ORTHO05D000833 1.7e-07 62.8 132 28.8
Lalb_Chr06g0168561 Lupinus albus HOM05D000329 ORTHO05D000833 1.7e-07 62.8 157 27.4
Lalb_Chr11g0073461 Lupinus albus HOM05D000329 ORTHO05D000833 1.7e-07 62.8 150 28.7
PSO017G3797 Papaver somniferum HOM05D000329 ORTHO05D000833 1.7e-07 62.8 179 27.4
THA.LOC104806238 Tarenaya hassleriana HOM05D000329 ORTHO05D000833 1.7e-07 62.8 144 27.1
TWI36G0726 Tripterygium wilfordii HOM05D000329 ORTHO05D000833 1.7e-07 62.8 192 27.6
AT1G08620 Arabidopsis thaliana HOM05D000329 ORTHO05D000833 2.2e-07 62.4 123 29.3
Lalb_Chr02g0149521 Lupinus albus HOM05D000329 ORTHO05D000833 2.2e-07 62.4 124 32.3
Psat7g060920 Pisum sativum HOM05D000329 ORTHO05D000833 2.2e-07 62.4 145 27.6
HPP92_001877 Vanilla planifolia HOM05D000329 ORTHO05D000833 2.2e-07 62.4 121 29.8
Actinidia40000 Actinidia chinensis HOM05D000329 ORTHO05D000833 2.9e-07 62.0 119 31.1
PSO063G3989 Papaver somniferum HOM05D000329 ORTHO05D000833 2.9e-07 62.0 144 27.8
SEGI_09405 Sequoiadendron giganteum HOM05D000329 ORTHO05D000833 2.9e-07 62.0 226 24.3
Duzib177G0926 Durio zibethinus HOM05D000329 ORTHO05D000833 3.8e-07 61.6 119 30.3
Sp7g18765 Schrenkiella parvula HOM05D000329 ORTHO05D000833 3.8e-07 61.6 148 26.4
SEGI_10694 Sequoiadendron giganteum HOM05D000329 ORTHO05D000833 3.8e-07 61.6 145 28.3
HPP92_013989 Vanilla planifolia HOM05D000329 ORTHO05D000833 3.8e-07 61.6 242 23.6
VMungo0251G2814 Vigna mungo HOM05D000329 ORTHO05D000833 3.8e-07 61.6 149 28.9
Glyma.U031208 Glycine max HOM05D000329 ORTHO05D000833 5.0e-07 61.2 145 27.6
Sabra11G0144700 Salix brachista HOM05D000329 ORTHO05D000833 6.5e-07 60.8 145 24.1
TWI63G1778 Tripterygium wilfordii HOM05D000329 ORTHO05D000833 6.5e-07 60.8 145 28.3
unitig_748.g8680 Utricularia gibba HOM05D000329 ORTHO05D000833 6.5e-07 60.8 130 29.2
CDE08G0067 Ceratophyllum demersum HOM05D000590 ORTHO05D005739 8.5e-07 60.5 77 36.4
Lsat_1_v5_gn_8_3521 Lactuca sativa HOM05D000329 ORTHO05D000833 8.5e-07 60.5 132 28.8
Medtr2g047130 Medicago truncatula HOM05D000329 ORTHO05D000833 8.5e-07 60.5 154 26.6
GSVIVG01037956001 Vitis vinifera HOM05D000329 ORTHO05D000833 8.5e-07 60.5 137 27.0
Aqoxy5G00216 Aquilegia oxysepala HOM05D000329 ORTHO05D000833 1.1e-06 60.1 193 26.9
CANSAT54G0692 Cannabis sativa HOM05D000329 ORTHO05D000833 1.1e-06 60.1 119 29.4
Gohir.D11G257900 Gossypium hirsutum HOM05D000329 ORTHO05D000833 1.1e-06 60.1 132 26.5
Phvul.009G218300 Phaseolus vulgaris HOM05D000329 ORTHO05D000833 1.1e-06 60.1 167 25.7
Dinv11974 Davidia involucrata HOM05D000329 ORTHO05D000833 1.4e-06 59.7 145 26.9
HPP92_001895 Vanilla planifolia HOM05D000329 ORTHO05D000833 1.4e-06 59.7 121 28.9
ClCG11G010660 Citrullus lanatus HOM05D000329 ORTHO05D000833 1.9e-06 59.3 119 28.6
Glyma.15G191600 Glycine max HOM05D000329 ORTHO05D000833 1.9e-06 59.3 151 26.5
Os05g0196500 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D000833 1.9e-06 59.3 181 26.0
Zm00001eb191790 Zea mays HOM05D000329 ORTHO05D000833 1.9e-06 59.3 153 28.8
Sed0008276 Sechium edule HOM05D000329 ORTHO05D000833 2.5e-06 58.9 172 26.7
THA.LOC104812159 Tarenaya hassleriana HOM05D000329 ORTHO05D000833 2.5e-06 58.9 120 29.2
Gohir.A11G247600 Gossypium hirsutum HOM05D000329 ORTHO05D000833 3.2e-06 58.5 132 25.8
Gorai.007G276200 Gossypium raimondii HOM05D000329 ORTHO05D000833 3.2e-06 58.5 132 25.8
FvH4_6g01870 Fragaria vesca HOM05D000329 ORTHO05D000833 4.2e-06 58.2 132 28.0
FAN02G0354 Fragaria x ananassa HOM05D000329 ORTHO05D000833 4.2e-06 58.2 132 28.0
FAN14G4488 Fragaria x ananassa HOM05D000329 ORTHO05D000833 4.2e-06 58.2 132 28.0
FAN14G5850 Fragaria x ananassa HOM05D000329 ORTHO05D000833 4.2e-06 58.2 132 28.0
Thhalv10024338m.g Eutrema salsugineum HOM05D000329 ORTHO05D000833 5.5e-06 57.8 149 24.2
PGR083G1455 Punica granatum HOM05D000329 ORTHO05D000833 5.5e-06 57.8 219 25.1
CSS0002419 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D000833 7.2e-06 57.4 133 27.1
MBI07_g16915_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D000833 9.4e-06 57.0 188 24.5
PRCOL_00000455 Prasinoderma coloniale HOM05D000590 ORTHO05D005739 9.4e-06 57.0 228 25.0
RcHm_v2.0_Chr3g0449611 Rosa chinensis HOM05D000329 ORTHO05D000833 9.4e-06 57.0 132 28.0


User provided reference genes

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