Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0033s0018 Marchantia polymorpha HOM05D002170 ORTHO05D007478 2.0e-250 868.6 434 100.0
Pp3c20_21870 Physcomitrium patens HOM05D002170 ORTHO05D007478 4.5e-186 654.8 379 83.9
AagrBONN_evm.TU.Sc2ySwM_362.1270 Anthoceros agrestis HOM05D002170 ORTHO05D007478 5.0e-185 651.4 388 78.9
Pp3c23_13670 Physcomitrium patens HOM05D002170 ORTHO05D007478 1.5e-181 639.8 379 82.1
SMO356G0689 Selaginella moellendorffii HOM05D002170 ORTHO05D007478 2.6e-181 639.0 375 80.0
SEGI_10571 Sequoiadendron giganteum HOM05D002170 ORTHO05D007478 2.8e-180 635.6 378 82.5
SalBow5G3655 Salvia bowleyana HOM05D002170 ORTHO05D007478 2.0e-178 629.4 404 75.7
TWI81G0098 Tripterygium wilfordii HOM05D002170 ORTHO05D007478 5.9e-178 627.9 383 78.9
Lalb_Chr22g0353421 Lupinus albus HOM05D002170 ORTHO05D007478 1.3e-177 626.7 387 77.3
Oeu023513.1 Olea europaea HOM05D002170 ORTHO05D007478 2.9e-177 625.5 379 79.2
Glyma.07G105400 Glycine max HOM05D002170 ORTHO05D007478 1.1e-176 623.6 382 78.0
Duzib068G1477 Durio zibethinus HOM05D002170 ORTHO05D007478 2.5e-176 622.5 383 77.8
Glyma.09G172700 Glycine max HOM05D002170 ORTHO05D007478 2.5e-176 622.5 382 78.0
Potri.015G030600 Populus trichocarpa HOM05D002170 ORTHO05D007478 3.3e-176 622.1 399 75.7
Lalb_Chr14g0370711 Lupinus albus HOM05D002170 ORTHO05D007478 4.3e-176 621.7 387 76.5
Ca_25357_v3 Cicer arietinum L. HOM05D002170 ORTHO05D007478 5.6e-176 621.3 386 77.5
CDE06G2490 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 7.3e-176 620.9 383 78.6
Medtr6g071210 Medicago truncatula HOM05D002170 ORTHO05D007478 7.3e-176 620.9 378 78.0
CiPaw.16G097200 Carya illinoinensis HOM05D002170 ORTHO05D007478 1.2e-175 620.2 380 77.9
TPR.G22320 Trifolium pratense HOM05D002170 ORTHO05D007478 1.6e-175 619.8 381 78.5
EL10Ac2g03531 Beta vulgaris HOM05D002170 ORTHO05D007478 2.1e-175 619.4 391 77.7
Manes.06G002900 Manihot esculenta HOM05D002170 ORTHO05D007478 2.1e-175 619.4 378 78.3
CANSAT35G0706 Cannabis sativa HOM05D002170 ORTHO05D007478 3.6e-175 618.6 378 78.3
MELO3C002149.2 Cucumis melo HOM05D002170 ORTHO05D007478 4.7e-175 618.2 383 78.1
Lj2g0009559 Lotus japonicus HOM05D002170 ORTHO05D007478 4.7e-175 618.2 378 78.3
MSTRG.9351 Avicennia marina HOM05D002170 ORTHO05D007478 6.1e-175 617.8 417 72.7
CARHR093160 Cardamine hirsuta HOM05D002170 ORTHO05D007478 6.1e-175 617.8 389 77.4
THA.LOC104820334 Tarenaya hassleriana HOM05D002170 ORTHO05D007478 6.1e-175 617.8 382 78.0
Thecc.03G062200 Theobroma cacao HOM05D002170 ORTHO05D007478 8.0e-175 617.5 383 77.0
Carub.0003s1752 Capsella rubella HOM05D002170 ORTHO05D007478 1.0e-174 617.1 378 79.4
Haze_18913 Corylus avellana HOM05D002170 ORTHO05D007478 1.0e-174 617.1 383 77.5
Thhalv10020777m.g Eutrema salsugineum HOM05D002170 ORTHO05D007478 1.0e-174 617.1 390 77.7
Prupe.5G236800 Prunus persica HOM05D002170 ORTHO05D007478 1.0e-174 617.1 383 77.8
Sp3g15930 Schrenkiella parvula HOM05D002170 ORTHO05D007478 1.0e-174 617.1 378 79.6
ClCG04G010450 Citrullus lanatus HOM05D002170 ORTHO05D007478 1.4e-174 616.7 410 73.9
Sabra15G0025500 Salix brachista HOM05D002170 ORTHO05D007478 1.4e-174 616.7 399 75.4
BcaB04g18965 Brassica carinata HOM05D002170 ORTHO05D007478 1.8e-174 616.3 375 79.7
BcaB04g20814 Brassica carinata HOM05D002170 ORTHO05D007478 1.8e-174 616.3 375 80.0
BcaNung05883 Brassica carinata HOM05D002170 ORTHO05D007478 1.8e-174 616.3 375 80.0
Duzib084G0411 Durio zibethinus HOM05D002170 ORTHO05D007478 1.8e-174 616.3 380 77.6
Phvul.004G148000 Phaseolus vulgaris HOM05D002170 ORTHO05D007478 1.8e-174 616.3 382 77.2
TAR629G0118 Trochodendron aralioides HOM05D002170 ORTHO05D007478 2.3e-174 615.9 378 78.6
Gohir.A09G175200 Gossypium hirsutum HOM05D002170 ORTHO05D007478 3.1e-174 615.5 383 76.8
Gorai.006G191200 Gossypium raimondii HOM05D002170 ORTHO05D007478 3.1e-174 615.5 383 76.8
vmacro17769 Vaccinium macrocarpon HOM05D002170 ORTHO05D007478 3.1e-174 615.5 430 71.4
C05p48530 Brassica napus HOM05D002170 ORTHO05D007478 4.0e-174 615.1 393 77.4
CSS0009402 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 4.0e-174 615.1 378 78.6
CSS0042449 Camellia sinensis var. sinensis HOM05D002170 ORTHO05D007478 4.0e-174 615.1 378 78.6
BcaC09g48741 Brassica carinata HOM05D002170 ORTHO05D007478 5.2e-174 614.8 375 79.7
A01p36570 Brassica napus HOM05D002170 ORTHO05D007478 5.2e-174 614.8 375 79.7
arahy.Tifrunner.gnm1.ann1.DTQ5EB Arachis hypogaea HOM05D002170 ORTHO05D007478 6.8e-174 614.4 393 75.3
A05p32010 Brassica napus HOM05D002170 ORTHO05D007478 6.8e-174 614.4 393 77.4
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 6.8e-174 614.4 383 77.3
Gohir.D09G169700 Gossypium hirsutum HOM05D002170 ORTHO05D007478 6.8e-174 614.4 383 76.8
RcHm_v2.0_Chr7g0177971 Rosa chinensis HOM05D002170 ORTHO05D007478 6.8e-174 614.4 411 73.0
CsaV3_1G007330 Cucumis sativus L. HOM05D002170 ORTHO05D007478 8.9e-174 614.0 380 78.2
PSO384G2182 Papaver somniferum HOM05D002170 ORTHO05D007478 8.9e-174 614.0 436 71.6
Atru.BG.197.p Acer truncatum HOM05D002170 ORTHO05D007478 1.2e-173 613.6 378 78.3
DCAR_003532 Daucus carota HOM05D002170 ORTHO05D007478 1.2e-173 613.6 390 76.2
MD06G1232500 Malus domestica HOM05D002170 ORTHO05D007478 1.2e-173 613.6 408 74.0
QL10p031496 Quercus lobata HOM05D002170 ORTHO05D007478 1.2e-173 613.6 385 77.1
CAN.G637.44 Capsicum annuum HOM05D002170 ORTHO05D007478 1.5e-173 613.2 381 77.7
Cfa020634 Carpinus fangiana HOM05D002170 ORTHO05D007478 1.5e-173 613.2 379 78.1
MD14G1239300 Malus domestica HOM05D002170 ORTHO05D007478 1.5e-173 613.2 408 73.8
Rhsim08G0127800 Rhododendron simsii HOM05D002170 ORTHO05D007478 1.5e-173 613.2 407 74.2
Actinidia09052 Actinidia chinensis HOM05D002170 ORTHO05D007478 2.0e-173 612.8 416 73.6
arahy.Tifrunner.gnm1.ann1.U6RNCV Arachis hypogaea HOM05D002170 ORTHO05D007478 2.0e-173 612.8 406 73.9
ECA232G0406 Erigeron canadensis HOM05D002170 ORTHO05D007478 2.0e-173 612.8 415 72.5
C01p46400 Brassica napus HOM05D002170 ORTHO05D007478 2.6e-173 612.5 375 79.5
FvH4_5g17680 Fragaria vesca HOM05D002170 ORTHO05D007478 2.6e-173 612.5 412 72.3
Solyc03g097910.4 Solanum lycopersicum HOM05D002170 ORTHO05D007478 2.6e-173 612.5 382 77.5
Cpa.g.sc3.360 Carica papaya HOM05D002170 ORTHO05D007478 3.4e-173 612.1 380 76.8
FAN18G3495 Fragaria x ananassa HOM05D002170 ORTHO05D007478 3.4e-173 612.1 412 72.1
Ciclev10020301m.g Citrus clementina HOM05D002170 ORTHO05D007478 4.4e-173 611.7 381 77.2
AUR62041617 Chenopodium quinoa HOM05D002170 ORTHO05D007478 5.8e-173 611.3 377 78.5
BolC5t33589H Brassica oleracea HOM05D002170 ORTHO05D007478 7.5e-173 610.9 393 76.8
FAN08G0558 Fragaria x ananassa HOM05D002170 ORTHO05D007478 7.5e-173 610.9 412 72.3
PSO339G1858 Papaver somniferum HOM05D002170 ORTHO05D007478 7.5e-173 610.9 440 70.7
Sed0008892 Sechium edule HOM05D002170 ORTHO05D007478 7.5e-173 610.9 411 72.7
PGSC0003DMG400033683 Solanum tuberosum HOM05D002170 ORTHO05D007478 7.5e-173 610.9 407 74.0
Ah.16g108010 Amaranthus hybridus HOM05D002170 ORTHO05D007478 1.3e-172 610.1 388 76.0
Aqoxy3G04073 Aquilegia oxysepala HOM05D002170 ORTHO05D007478 1.3e-172 610.1 420 71.4
FAN04G0031 Fragaria x ananassa HOM05D002170 ORTHO05D007478 1.3e-172 610.1 412 71.8
Sopen03g028630 Solanum pennellii HOM05D002170 ORTHO05D007478 1.3e-172 610.1 404 74.8
AL3G30970 Arabidopsis lyrata HOM05D002170 ORTHO05D007478 1.7e-172 609.8 389 76.9
AT3G17810 Arabidopsis thaliana HOM05D002170 ORTHO05D007478 2.2e-172 609.4 389 76.9
Migut.D01219 Erythranthe guttata HOM05D002170 ORTHO05D007478 2.2e-172 609.4 427 71.0
Lsat_1_v5_gn_0_10461 Lactuca sativa HOM05D002170 ORTHO05D007478 2.2e-172 609.4 405 73.1
Sc04g0004500 Simmondsia chinensis HOM05D002170 ORTHO05D007478 2.2e-172 609.4 407 73.0
HPP92_007961 Vanilla planifolia HOM05D002170 ORTHO05D007478 2.2e-172 609.4 431 71.9
PGR044G0130 Punica granatum HOM05D002170 ORTHO05D007478 2.9e-172 609.0 379 77.0
HanXRQChr15g0492101 Helianthus annuus HOM05D002170 ORTHO05D007478 3.7e-172 608.6 408 73.0
HanXRQChr16g0511571 Helianthus annuus HOM05D002170 ORTHO05D007478 3.7e-172 608.6 386 75.6
Eucgr.K02286 Eucalyptus grandis HOM05D002170 ORTHO05D007478 4.9e-172 608.2 382 75.9
Hund22449 Selenicereus undatus HOM05D002170 ORTHO05D007478 8.3e-172 607.4 416 73.1
BolC1t04600H Brassica oleracea HOM05D002170 ORTHO05D007478 1.4e-171 606.7 375 78.9
Os02g0736400 Oryza sativa ssp. japonica HOM05D002170 ORTHO05D007478 2.4e-171 605.9 413 72.9
BraA05t22032Z Brassica rapa HOM05D002170 ORTHO05D007478 4.1e-171 605.1 390 76.9
Hma1.2p1_0471F.1_g159440 Hydrangea macrophylla HOM05D002170 ORTHO05D007478 4.1e-171 605.1 386 76.2
ATR0118G019 Amborella trichopoda HOM05D002170 ORTHO05D007478 7.0e-171 604.4 391 74.7
BraA01t03721Z Brassica rapa HOM05D002170 ORTHO05D007478 9.2e-171 604.0 383 77.5
CBR_g39071 Chara braunii HOM05D002170 ORTHO05D007478 7.8e-170 600.9 377 75.6
Cc04_g09360 Coffea canephora HOM05D002170 ORTHO05D007478 1.0e-169 600.5 409 71.1
Zm00001eb253890 Zea mays HOM05D002170 ORTHO05D007478 1.0e-169 600.5 382 76.4
GSVIVG01008478001 Vitis vinifera HOM05D002170 ORTHO05D007478 2.8e-167 592.4 366 77.9
CiPaw.15G147300 Carya illinoinensis HOM05D002170 ORTHO05D007478 3.6e-167 592.0 366 77.6
Peaxi162Scf00171g01030 Petunia axillaris HOM05D002170 ORTHO05D007478 1.4e-166 590.1 405 72.8
AUR62036004 Chenopodium quinoa HOM05D002170 ORTHO05D007478 5.2e-166 588.2 365 78.1
Lj9C416G6 Lonicera japonica HOM05D002170 ORTHO05D007478 6.8e-166 587.8 396 73.0
Aa31LG8G4690 Aethionema arabicum HOM05D002170 ORTHO05D007478 7.5e-165 584.3 455 66.4
MCO10G163 Micromonas commoda HOM05D002170 ORTHO05D007478 2.7e-162 575.9 377 72.7
Nitab4.5_0000430g0180 Nicotiana tabacum HOM05D002170 ORTHO05D007478 6.0e-162 574.7 382 73.6
Atru.chr9.1597 Acer truncatum HOM05D002170 ORTHO05D007478 2.3e-161 572.8 394 72.3
Nitab4.5_0006581g0020 Nicotiana tabacum HOM05D002170 ORTHO05D007478 1.1e-160 570.5 378 73.5
Cre13.g578750 Chlamydomonas reinhardtii HOM05D002170 ORTHO05D007478 2.1e-154 549.7 429 64.1
PRCOL_00005290 Prasinoderma coloniale HOM05D002170 ORTHO05D007478 6.0e-154 548.1 364 72.8
Psat1g029560 Pisum sativum HOM05D002170 ORTHO05D007478 2.3e-153 546.2 332 79.5
Dinv05998 Davidia involucrata HOM05D002170 ORTHO05D007478 1.2e-151 540.4 330 79.1
BcaC01g03730 Brassica carinata HOM05D002170 ORTHO05D007478 5.1e-145 518.5 369 70.7
SHI19063 Sapria himalayana HOM05D002170 ORTHO05D007478 4.4e-141 505.4 327 72.8
CDE04G1365 Ceratophyllum demersum HOM05D002170 ORTHO05D007478 1.9e-136 490.0 345 71.6
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.8e-135 486.1 352 70.2
unitig_27.g25082 Utricularia gibba HOM05D002170 ORTHO05D007478 1.0e-129 467.6 287 77.7
C03p49210 Brassica napus HOM05D002170 ORTHO05D007478 4.5e-117 425.6 399 58.1
BolC3t17203H Brassica oleracea HOM05D002170 ORTHO05D007478 6.5e-116 421.8 298 70.8
Potri.012G043300 Populus trichocarpa HOM05D002170 ORTHO05D007478 3.3e-96 356.3 266 67.3
Oeu016182.1 Olea europaea HOM05D002170 ORTHO05D007478 7.7e-93 345.1 279 64.5
Haze_26546 Corylus avellana HOM05D002170 ORTHO05D007478 2.4e-78 297.0 330 45.5
Haze_27328 Corylus avellana HOM05D002170 ORTHO05D007478 3.1e-78 296.6 330 45.8
SGA_v2.0_scaffold40G15643 Striga asiatica HOM05D002170 ORTHO05D007478 9.8e-56 221.9 168 66.7
SGA_v2.0_scaffold1356G53925 Striga asiatica HOM05D002170 ORTHO05D007478 7.1e-46 189.1 117 80.3
Solyc02g044040.3 Solanum lycopersicum HOM05D002170 ORTHO05D390875 6.0e-37 159.5 107 69.2
Phvul.008G096200 Phaseolus vulgaris HOM05D002170 ORTHO05D023792 4.3e-27 126.7 83 72.3
Psat3g071120 Pisum sativum HOM05D002170 ORTHO05D327785 5.6e-27 126.3 125 57.6
BraA03t13196Z Brassica rapa HOM05D002170 ORTHO05D023792 2.2e-23 114.4 83 65.1
A03p40410 Brassica napus HOM05D002170 ORTHO05D023792 6.4e-23 112.8 83 63.9
Ca_22557_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148971 1.2e-21 108.6 101 53.5
MSTRG.4628 Avicennia marina HOM05D002170 ORTHO05D023792 1.1e-19 102.1 80 66.2
unitig_27.g25081 Utricularia gibba HOM05D002170 ORTHO05D007478 6.2e-18 96.3 81 61.7
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 1.1e-17 95.5 195 33.8
MD05G1052900 Malus domestica HOM05D002170 ORTHO05D000222 9.3e-14 82.4 51 78.4
Ca_03420_v3 Cicer arietinum L. HOM05D002170 ORTHO05D148646 1.2e-08 65.5 33 84.8
THA.LOC104800685 Tarenaya hassleriana HOM05D004870 ORTHO05D006061 1.7e-07 61.6 205 27.8
CBR_g53542 Chara braunii HOM05D004870 ORTHO05D006061 3.8e-07 60.5 154 26.6
Thhalv10004171m.g Eutrema salsugineum HOM05D004870 ORTHO05D006061 6.5e-07 59.7 157 28.7
Carub.0006s2107 Capsella rubella HOM05D004870 ORTHO05D006061 1.1e-06 58.9 208 26.0
VMungo0720G1992 Vigna mungo HOM05D004870 ORTHO05D006061 2.5e-06 57.8 205 27.8
GSVIVG01026142001 Vitis vinifera HOM05D004870 ORTHO05D006061 2.5e-06 57.8 203 26.6
C07p44260 Brassica napus HOM05D004870 ORTHO05D006061 3.2e-06 57.4 157 28.0
BolC7t44949H Brassica oleracea HOM05D004870 ORTHO05D006061 3.2e-06 57.4 157 28.0
Prupe.4G061300 Prunus persica HOM05D004870 ORTHO05D006061 3.2e-06 57.4 211 26.5
TPR.G4052 Trifolium pratense HOM05D004870 ORTHO05D006061 3.2e-06 57.4 205 28.3
Ca_11257_v3 Cicer arietinum L. HOM05D004870 ORTHO05D006061 4.2e-06 57.0 205 27.8
Glyma.10G286200 Glycine max HOM05D004870 ORTHO05D006061 4.2e-06 57.0 205 27.8
Lj5g0006106 Lotus japonicus HOM05D004870 ORTHO05D006061 4.2e-06 57.0 205 27.3
Phvul.007G014700 Phaseolus vulgaris HOM05D004870 ORTHO05D006061 4.2e-06 57.0 205 27.8
Glyma.20G103100 Glycine max HOM05D004870 ORTHO05D006061 5.5e-06 56.6 205 27.3
BcaC04g23488 Brassica carinata HOM05D004870 ORTHO05D006061 7.1e-06 56.2 157 27.4
A06p34260 Brassica napus HOM05D004870 ORTHO05D006061 7.1e-06 56.2 157 27.4
BraA06t26358Z Brassica rapa HOM05D004870 ORTHO05D006061 7.1e-06 56.2 157 27.4
MD05G1301200 Malus domestica HOM05D004870 ORTHO05D006061 7.1e-06 56.2 203 26.6
Medtr1g114530 Medicago truncatula HOM05D004870 ORTHO05D006061 7.1e-06 56.2 205 27.3
Sp2g23850 Schrenkiella parvula HOM05D004870 ORTHO05D006061 7.1e-06 56.2 157 27.4
CSS0023232 Camellia sinensis var. sinensis HOM05D004870 ORTHO05D006061 9.3e-06 55.8 205 26.8
Manes.15G107800 Manihot esculenta HOM05D004870 ORTHO05D006061 9.3e-06 55.8 203 27.6


User provided reference genes

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