Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 6.0e-244 847.0 418 100.0
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.9e-110 402.5 367 55.6
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 1.4e-107 394.0 266 67.7
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 2.9e-105 386.3 273 65.2
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.4e-104 384.0 272 64.3
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 2.5e-104 383.3 332 57.5
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 3.5e-103 379.4 289 64.4
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.3e-102 376.7 283 61.8
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 8.7e-102 374.8 268 66.0
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 1.1e-101 374.4 270 64.4
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 2.5e-101 373.2 325 57.5
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 2.2e-100 370.2 270 65.2
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 2.2e-100 370.2 269 63.9
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 2.2e-100 370.2 325 56.9
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 2.8e-100 369.8 268 66.0
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.8e-99 367.1 276 62.3
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.8e-99 367.1 276 62.3
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 4.1e-99 365.9 274 60.6
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 5.3e-99 365.5 272 64.7
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 9.0e-99 364.8 266 65.0
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 1.2e-98 364.4 270 63.0
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 1.2e-98 364.4 272 62.5
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 1.5e-98 364.0 276 62.7
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 2.0e-98 363.6 268 64.6
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.0e-98 363.6 267 62.5
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 2.0e-98 363.6 267 62.5
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 3.4e-98 362.8 268 64.2
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 4.5e-98 362.5 274 60.9
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 4.5e-98 362.5 293 60.8
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.3e-97 360.9 331 55.9
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 1.7e-97 360.5 273 62.6
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 1.7e-97 360.5 273 63.0
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 2.2e-97 360.1 269 64.3
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 2.2e-97 360.1 269 64.7
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 2.9e-97 359.8 341 53.7
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 3.8e-97 359.4 275 62.5
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 6.5e-97 358.6 273 61.9
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 8.5e-97 358.2 324 55.9
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 8.5e-97 358.2 287 61.3
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 8.5e-97 358.2 322 55.3
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 1.1e-96 357.8 322 56.5
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.9e-96 357.1 287 61.0
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.9e-96 357.1 269 64.3
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 2.5e-96 356.7 300 59.7
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 2.5e-96 356.7 284 59.5
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 4.2e-96 355.9 273 62.3
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 5.5e-96 355.5 307 56.7
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 7.2e-96 355.1 328 56.1
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 7.2e-96 355.1 274 61.7
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 9.3e-96 354.8 319 56.4
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 1.2e-95 354.4 300 58.3
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 1.2e-95 354.4 296 58.8
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 1.2e-95 354.4 296 58.8
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 1.2e-95 354.4 296 58.8
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 1.2e-95 354.4 271 62.0
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 1.2e-95 354.4 269 62.1
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 2.1e-95 353.6 273 62.6
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 2.1e-95 353.6 283 61.8
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 4.6e-95 352.4 271 62.4
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 1.0e-94 351.3 267 62.5
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 1.3e-94 350.9 271 60.9
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 1.3e-94 350.9 338 55.0
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 1.3e-94 350.9 271 61.3
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 2.3e-94 350.1 288 57.3
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 2.3e-94 350.1 289 59.5
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 3.9e-94 349.4 271 60.5
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 3.9e-94 349.4 282 59.9
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 5.1e-94 349.0 268 62.7
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.5e-93 347.4 291 58.4
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 1.9e-93 347.1 256 62.5
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 5.7e-93 345.5 282 60.3
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 7.4e-93 345.1 273 60.4
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 2.2e-92 343.6 319 55.5
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 2.8e-92 343.2 303 56.4
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.1e-91 341.3 271 59.8
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.1e-91 341.3 271 59.8
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.1e-91 341.3 271 59.8
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.4e-91 340.9 277 59.2
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 1.8e-91 340.5 320 54.1
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 2.4e-91 340.1 324 54.0
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 2.4e-91 340.1 311 55.0
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 9.1e-91 338.2 265 61.5
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 1.3e-89 334.3 250 62.8
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 3.2e-88 329.7 331 52.3
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 5.5e-88 328.9 343 50.1
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 7.2e-88 328.6 235 65.1
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 9.4e-88 328.2 253 61.3
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 9.4e-88 328.2 245 61.2
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 3.6e-87 326.2 251 62.9
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 4.6e-87 325.9 246 63.8
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 7.9e-87 325.1 294 56.8
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 7.9e-87 325.1 288 56.2
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 1.4e-86 324.3 254 63.0
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 1.8e-86 323.9 246 62.2
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 2.3e-86 323.6 255 61.2
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 2.3e-86 323.6 266 60.5
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 5.1e-86 322.4 227 64.3
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.1e-85 321.2 245 60.8
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 3.3e-85 319.7 278 56.1
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 1.7e-84 317.4 275 55.6
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 4.5e-82 309.3 256 57.8
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.9e-81 306.6 230 61.7
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 4.2e-80 302.8 277 56.0
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 9.4e-80 301.6 282 54.3
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 9.4e-80 301.6 210 67.1
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 1.0e-78 298.1 227 59.5
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 5.2e-78 295.8 209 65.6
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 2.8e-76 290.0 286 53.8
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 9.1e-75 285.0 257 54.9
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.9e-72 277.3 273 53.1
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 5.5e-72 275.8 244 55.3
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 6.1e-71 272.3 278 52.5
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 8.0e-71 271.9 226 60.2
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 3.1e-67 260.0 371 42.9
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 5.2e-62 242.7 190 60.0
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 8.8e-62 241.9 215 54.9
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 1.1e-56 224.9 220 51.8
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 1.2e-55 221.5 183 56.3
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 9.8e-53 211.8 173 58.4
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 6.3e-52 209.1 170 58.8
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.1e-48 198.4 180 53.9
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 1.7e-44 184.5 211 45.5
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 2.3e-41 174.1 231 43.7
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 9.5e-40 168.7 207 43.5
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-38 164.9 207 42.5
arahy.Tifrunner.gnm1.ann1.AZJV2P Arachis hypogaea HOM05D004663 ORTHO05D006325 8.9e-38 162.2 119 67.2
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 8.9e-38 162.2 207 42.5
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.8e-37 159.5 207 41.1
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 3.2e-35 153.7 100 70.0
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 8.6e-33 145.6 175 45.1
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 4.3e-32 143.3 207 38.6
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 1.6e-31 141.4 109 57.8
MBI03_g05117_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 2.1e-31 141.0 85 76.5
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 6.2e-31 139.4 176 40.9
Glyma.11G103600 Glycine max HOM05D004663 ORTHO05D006325 2.3e-30 137.5 108 66.7
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.4e-27 126.3 207 33.8
Pp3c1_10590 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.8e-26 122.5 207 35.3
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-25 121.7 201 35.8
arahy.Tifrunner.gnm1.ann1.A394HF Arachis hypogaea HOM05D004663 ORTHO05D006325 3.0e-25 120.6 77 71.4
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.1e-24 118.6 197 35.0
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.1e-24 118.6 197 35.0
Medtr4g077140 Medicago truncatula HOM05D004663 ORTHO05D006325 8.1e-23 112.5 86 60.5
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 4.0e-22 110.2 138 44.2
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.3e-20 105.1 207 30.9
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 2.1e-18 97.8 96 50.0
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 3.9e-17 93.6 164 37.2
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 3.9e-17 93.6 180 32.8
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 3.4e-13 80.5 201 29.9
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.7e-09 68.2 112 34.8
Pp3c4_1950 Physcomitrium patens HOM05D004663 ORTHO05D318537 3.1e-06 57.4 61 45.9
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 9.0e-06 55.8 32 59.4


User provided reference genes

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