Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0027s0186 Marchantia polymorpha HOM05D005045 ORTHO05D006386 0.0e+00 2449.9 1317 100.0
CiPaw.01G116800 Carya illinoinensis HOM05D005045 ORTHO05D006386 0.0e+00 1321.2 1317 54.7
TWI53G1845 Tripterygium wilfordii HOM05D005045 ORTHO05D006386 0.0e+00 1318.1 1317 54.5
ATR0561G148 Amborella trichopoda HOM05D005045 ORTHO05D006386 0.0e+00 1298.1 1303 54.6
Glyma.18G002400 Glycine max HOM05D005045 ORTHO05D006386 0.0e+00 1294.6 1317 53.9
Potri.001G320300 Populus trichocarpa HOM05D005045 ORTHO05D006386 0.0e+00 1293.5 1317 54.4
PSO017G0058 Papaver somniferum HOM05D005045 ORTHO05D006386 0.0e+00 1291.6 1317 53.8
Cpa.g.sc157.48 Carica papaya HOM05D005045 ORTHO05D006386 0.0e+00 1286.9 1317 53.6
Cfa014961 Carpinus fangiana HOM05D005045 ORTHO05D006386 0.0e+00 1285.4 1303 54.2
HPP92_024209 Vanilla planifolia HOM05D005045 ORTHO05D006386 0.0e+00 1283.1 1317 53.3
Pp3c10_3760 Physcomitrium patens HOM05D005045 ORTHO05D006386 0.0e+00 1276.2 1321 52.8
Ciclev10004166m.g Citrus clementina HOM05D005045 ORTHO05D006386 0.0e+00 1271.9 1317 53.2
Aqoxy2G03932 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 0.0e+00 1270.4 1317 53.3
Sed0026716 Sechium edule HOM05D005045 ORTHO05D006386 0.0e+00 1269.6 1317 52.2
Phvul.001G266800 Phaseolus vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1258.0 1317 52.4
Lj6g0005100 Lotus japonicus HOM05D005045 ORTHO05D006386 0.0e+00 1256.9 1317 52.5
Lalb_Chr11g0075871 Lupinus albus HOM05D005045 ORTHO05D006386 0.0e+00 1254.6 1317 52.5
AagrBONN_evm.TU.Sc2ySwM_368.995 Anthoceros agrestis HOM05D002013 ORTHO05D002293 0.0e+00 1254.2 1312 52.7
MD05G1230300 Malus domestica HOM05D005045 ORTHO05D006386 0.0e+00 1249.2 1317 51.7
MELO3C006292.2 Cucumis melo HOM05D005045 ORTHO05D006386 0.0e+00 1248.8 1317 52.2
Cc03_g08470 Coffea canephora HOM05D005045 ORTHO05D006386 0.0e+00 1245.3 1318 53.6
Carub.0004s1329 Capsella rubella HOM05D005045 ORTHO05D006386 0.0e+00 1245.0 1317 51.9
Thhalv10016151m.g Eutrema salsugineum HOM05D005045 ORTHO05D006386 0.0e+00 1240.7 1317 51.9
THA.LOC104826172 Tarenaya hassleriana HOM05D005045 ORTHO05D006386 0.0e+00 1240.7 1318 52.3
Dinv38168 Davidia involucrata HOM05D005045 ORTHO05D006386 0.0e+00 1240.3 1317 52.5
Sp4g14350 Schrenkiella parvula HOM05D005045 ORTHO05D006386 0.0e+00 1234.6 1317 52.9
Actinidia28996 Actinidia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1234.2 1323 52.7
FvH4_4g13300 Fragaria vesca HOM05D005045 ORTHO05D006386 0.0e+00 1231.5 1317 51.7
CAN.G765.38 Capsicum annuum HOM05D005045 ORTHO05D006386 0.0e+00 1229.9 1317 52.2
Prupe.1G165000 Prunus persica HOM05D005045 ORTHO05D006386 0.0e+00 1229.5 1317 51.6
Peaxi162Scf00423g00410 Petunia axillaris HOM05D005045 ORTHO05D006386 0.0e+00 1228.4 1317 51.7
Nn3g20083 Nelumbo nucifera HOM05D005045 ORTHO05D006386 0.0e+00 1227.2 1325 51.0
CsaV3_3G010730 Cucumis sativus L. HOM05D005045 ORTHO05D006386 0.0e+00 1222.6 1317 51.6
Migut.G00767 Erythranthe guttata HOM05D005045 ORTHO05D006386 0.0e+00 1221.5 1317 51.0
RcHm_v2.0_Chr4g0413591 Rosa chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1219.5 1317 51.0
Manes.03G144200 Manihot esculenta HOM05D005045 ORTHO05D006386 0.0e+00 1215.3 1317 51.5
AL4G27320 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 0.0e+00 1214.1 1317 52.2
AT2G31970 Arabidopsis thaliana HOM05D005045 ORTHO05D006386 0.0e+00 1214.1 1317 52.2
PGR142G0016 Punica granatum HOM05D005045 ORTHO05D006386 0.0e+00 1211.4 1317 51.8
ClCG05G003110 Citrullus lanatus HOM05D005045 ORTHO05D006386 0.0e+00 1209.1 1365 50.5
EL10Ac3g07454 Beta vulgaris HOM05D005045 ORTHO05D006386 0.0e+00 1203.0 1317 51.4
Sopen05g032270 Solanum pennellii HOM05D005045 ORTHO05D006386 0.0e+00 1202.6 1317 51.6
MSTRG.9796 Avicennia marina HOM05D005045 ORTHO05D006386 0.0e+00 1194.1 1317 50.4
BcaB01g04004 Brassica carinata HOM05D005045 ORTHO05D006386 0.0e+00 1193.3 1317 51.9
Lsat_1_v5_gn_6_59140 Lactuca sativa HOM05D005045 ORTHO05D006386 0.0e+00 1191.0 1317 50.2
HanXRQChr02g0058481 Helianthus annuus HOM05D005045 ORTHO05D006386 0.0e+00 1190.6 1320 50.8
Solyc05g053800.3 Solanum lycopersicum HOM05D005045 ORTHO05D006386 0.0e+00 1189.9 1317 51.3
CSS0020032 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 0.0e+00 1186.8 1317 52.2
Thecc.04G195000 Theobroma cacao HOM05D005045 ORTHO05D006386 0.0e+00 1184.5 1317 50.8
Haze_11653 Corylus avellana HOM05D005045 ORTHO05D006386 0.0e+00 1181.8 1549 46.5
Sabra16G0202900 Salix brachista HOM05D005045 ORTHO05D006386 0.0e+00 1180.6 1437 48.7
VMungo1383G3533 Vigna mungo HOM05D005045 ORTHO05D006386 0.0e+00 1179.9 1303 51.0
Aa31LG5G5040 Aethionema arabicum HOM05D005045 ORTHO05D006386 0.0e+00 1179.5 1343 50.2
A03p17990 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1179.5 1340 51.0
FAN22G0494 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1179.1 1370 49.1
Psat5g100040 Pisum sativum HOM05D005045 ORTHO05D006386 0.0e+00 1177.5 1317 49.5
BolC3t14484H Brassica oleracea HOM05D005045 ORTHO05D006386 0.0e+00 1172.9 1332 51.1
C03p21030 Brassica napus HOM05D005045 ORTHO05D006386 0.0e+00 1171.4 1332 51.1
BraA03t11060Z Brassica rapa HOM05D005045 ORTHO05D006386 0.0e+00 1171.4 1359 50.3
Medtr3g084300 Medicago truncatula HOM05D005045 ORTHO05D006386 0.0e+00 1163.7 1317 49.7
ECA233G4939 Erigeron canadensis HOM05D005045 ORTHO05D006386 0.0e+00 1154.8 1317 48.7
CDE02G0777 Ceratophyllum demersum HOM05D005045 ORTHO05D006386 0.0e+00 1149.0 1318 50.4
SalBow8G0828 Salvia bowleyana HOM05D005045 ORTHO05D006386 0.0e+00 1146.3 1303 49.7
SGA_v2.0_scaffold27G11679 Striga asiatica HOM05D005045 ORTHO05D006386 0.0e+00 1146.0 1317 49.7
TPR.G25379 Trifolium pratense HOM05D005045 ORTHO05D006386 0.0e+00 1140.2 1340 48.4
FAN12G2321 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1132.1 1318 48.9
Gohir.A02G019100 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1129.4 1319 50.2
Gorai.005G027800 Gossypium raimondii HOM05D005045 ORTHO05D006386 0.0e+00 1128.6 1319 50.2
Gohir.D02G022400 Gossypium hirsutum HOM05D005045 ORTHO05D006386 0.0e+00 1127.5 1319 50.1
Atru.chr4.1578 Acer truncatum HOM05D005045 ORTHO05D006386 0.0e+00 1124.4 1317 49.4
Duzib151G0179 Durio zibethinus HOM05D005045 ORTHO05D006386 0.0e+00 1124.0 1318 49.3
DCAR_005488 Daucus carota HOM05D005045 ORTHO05D006386 0.0e+00 1110.5 1303 49.4
Nitab4.5_0002260g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 0.0e+00 1106.7 1261 49.5
Eucgr.H00025 Eucalyptus grandis HOM05D005045 ORTHO05D006386 0.0e+00 1087.4 1210 50.4
Sc19g0007360 Simmondsia chinensis HOM05D005045 ORTHO05D006386 0.0e+00 1084.7 1210 50.2
FAN07G1455 Fragaria x ananassa HOM05D005045 ORTHO05D006386 0.0e+00 1083.9 1254 48.9
vmacro15566 Vaccinium macrocarpon HOM05D005045 ORTHO05D006386 5.2e-310 1068.1 1370 48.0
SMO356G0717 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 2.2e-308 1062.8 1316 46.9
Rhsim02G0061900 Rhododendron simsii HOM05D005045 ORTHO05D006386 4.1e-307 1058.5 1401 45.8
SMO217G0009 Selaginella moellendorffii HOM05D005045 ORTHO05D006386 5.3e-286 988.4 1251 47.1
CBR_g44539 Chara braunii HOM05D005045 ORTHO05D006386 3.1e-246 856.3 1272 41.4
Zm00001eb181120 Zea mays HOM05D005045 ORTHO05D006386 6.1e-242 842.0 1062 46.2
SEGI_03959 Sequoiadendron giganteum HOM05D005045 ORTHO05D006386 7.5e-232 808.5 761 57.2
MBI07_g27365_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.3e-204 718.0 759 51.9
unitig_0.g1961 Utricularia gibba HOM05D005045 ORTHO05D006386 4.4e-200 703.0 1059 39.7
CARHR125720 Cardamine hirsuta HOM05D005045 ORTHO05D006386 5.8e-200 702.6 742 51.5
AUR62020863 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.5e-189 666.8 888 43.9
Os02g0497500 Oryza sativa ssp. japonica HOM05D005045 ORTHO05D006386 5.6e-187 659.4 721 51.0
Oeu034322.3 Olea europaea HOM05D005045 ORTHO05D006386 1.3e-183 648.3 902 42.5
Ah.04g149410 Amaranthus hybridus HOM05D005045 ORTHO05D006386 7.8e-181 639.0 1102 37.8
BcaNung07126 Brassica carinata HOM05D005045 ORTHO05D006386 2.5e-179 634.0 767 47.2
TAR362G1154 Trochodendron aralioides HOM05D005045 ORTHO05D006386 2.8e-178 630.6 669 52.2
MCO01G132 Micromonas commoda HOM05D005045 ORTHO05D006386 3.4e-176 623.6 1387 34.6
Nitab4.5_0003358g0080 Nicotiana tabacum HOM05D005045 ORTHO05D006386 2.7e-173 614.0 1008 38.7
MBI07_g27366_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.3e-167 595.1 550 58.9
arahy.Tifrunner.gnm1.ann1.RK3EBX Arachis hypogaea HOM05D005045 ORTHO05D006386 1.1e-166 592.0 629 51.7
arahy.Tifrunner.gnm1.ann1.2Y4S4L Arachis hypogaea HOM05D005045 ORTHO05D006386 1.4e-166 591.7 629 51.8
BcaC01g05925 Brassica carinata HOM05D005045 ORTHO05D006386 1.1e-163 582.0 790 44.4
Lju912A1G33 Lonicera japonica HOM05D005045 ORTHO05D006386 2.1e-157 561.2 723 44.7
Ca_16407_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 8.7e-156 555.8 621 49.4
Ca_16416_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 8.7e-156 555.8 621 49.4
Ca_16406_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 5.3e-153 546.6 631 49.0
Cre03.g192550 Chlamydomonas reinhardtii HOM05D005045 ORTHO05D006386 1.5e-152 545.0 1360 31.6
PRCOL_00000463 Prasinoderma coloniale HOM05D005045 ORTHO05D006386 9.6e-147 525.8 1336 31.9
SHI26063 Sapria himalayana HOM05D005045 ORTHO05D006386 1.8e-137 495.0 733 42.0
Lj6C381G5 Lonicera japonica HOM05D005045 ORTHO05D006386 3.9e-132 477.2 605 47.9
Cfa022909 Carpinus fangiana HOM05D005045 ORTHO05D006386 4.7e-125 453.8 1333 28.3
CSS0025820 Camellia sinensis var. sinensis HOM05D005045 ORTHO05D006386 6.1e-125 453.4 350 69.1
AUR62018556 Chenopodium quinoa HOM05D005045 ORTHO05D006386 3.7e-122 444.1 374 63.4
FAN17G1875 Fragaria x ananassa HOM05D005045 ORTHO05D006386 2.6e-120 438.0 296 75.3
arahy.Tifrunner.gnm1.ann1.KK4CMR Arachis hypogaea HOM05D005045 ORTHO05D006386 1.3e-114 419.1 392 57.9
AUR62020862 Chenopodium quinoa HOM05D005045 ORTHO05D006386 1.8e-108 398.7 434 53.7
COL.COLO4_20233 Corchorus olitorius HOM05D005045 ORTHO05D006386 5.7e-107 393.7 242 81.0
Ca_16414_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 1.2e-104 386.0 222 85.6
QL06p025788 Quercus lobata HOM05D005045 ORTHO05D006386 2.0e-104 385.2 264 74.2
unitig_0.g1960 Utricularia gibba HOM05D005045 ORTHO05D006386 1.7e-103 382.1 224 84.4
Aqoxy430s001 Aquilegia oxysepala HOM05D005045 ORTHO05D006386 8.8e-100 369.8 526 43.7
AL80U10080 Arabidopsis lyrata HOM05D005045 ORTHO05D006386 2.7e-88 331.6 187 85.6
Lju912C0T2 Lonicera japonica HOM05D005045 ORTHO05D006386 5.4e-81 307.4 469 41.8
Ah.04g149400 Amaranthus hybridus HOM05D005045 ORTHO05D006386 7.0e-81 307.0 223 71.3
BcaNung07125 Brassica carinata HOM05D005045 ORTHO05D006386 1.8e-68 265.8 311 49.2
COL.COLO4_20231 Corchorus olitorius HOM05D005045 ORTHO05D006386 1.5e-59 236.1 495 34.9
Nitab4.5_0003358g0100 Nicotiana tabacum HOM05D005045 ORTHO05D006386 9.3e-57 226.9 126 88.1
Nitab4.5_0003358g0090 Nicotiana tabacum HOM05D005045 ORTHO05D006386 3.4e-51 208.4 140 77.1
BcaB01g04007 Brassica carinata HOM05D005045 ORTHO05D006386 4.6e-48 198.0 394 33.2
Actinidia11455 Actinidia chinensis HOM05D005045 ORTHO05D006386 6.7e-47 194.1 139 74.1
Lj6A381G13 Lonicera japonica HOM05D005045 ORTHO05D006386 4.5e-43 181.4 226 42.9
Prupe.1G180400 Prunus persica HOM05D005045 ORTHO05D006386 2.7e-40 172.2 170 53.5
Ca_16415_v3 Cicer arietinum L. HOM05D005045 ORTHO05D006386 7.4e-38 164.1 437 28.6
SHI26076 Sapria himalayana HOM05D005045 ORTHO05D006386 8.2e-37 160.6 87 89.7
Actinidia11457 Actinidia chinensis HOM05D005045 ORTHO05D006386 8.4e-34 150.6 106 74.5
Rhsim02G0061800 Rhododendron simsii HOM05D005045 ORTHO05D006386 4.8e-29 134.8 72 83.3
Lj6A381G12 Lonicera japonica HOM05D005045 ORTHO05D006386 1.4e-25 123.2 162 43.8
Lsat_1_v5_gn_2_13081 Lactuca sativa HOM05D005045 ORTHO05D006386 4.8e-21 108.2 64 84.4
MBI07_g45033_MAGBIO Magnolia biondii HOM05D005045 ORTHO05D006386 1.8e-20 106.3 105 57.1
Lsat_1_v5_gn_3_72140 Lactuca sativa HOM05D005045 ORTHO05D006386 7.7e-19 100.9 64 76.6
Lsat_1_v5_gn_5_127521 Lactuca sativa HOM05D005045 ORTHO05D006386 1.7e-18 99.8 108 54.6
SHI26067 Sapria himalayana HOM05D005045 ORTHO05D006386 6.7e-15 87.8 114 42.1
Lsat_1_v5_gn_6_56800 Lactuca sativa HOM05D000112 ORTHO05D001918 1.4e-12 80.1 53 69.8
SHI26072 Sapria himalayana HOM05D005045 ORTHO05D006386 1.8e-12 79.7 164 34.8
BcaB01g04008 Brassica carinata HOM05D005045 ORTHO05D006386 9.1e-12 77.4 137 35.8
Lsat_1_v5_gn_8_35100 Lactuca sativa HOM05D000324 ORTHO05D010724 1.9e-09 69.7 63 63.5
Lsat_1_v5_gn_4_149801 Lactuca sativa HOM05D000324 ORTHO05D010724 8.0e-08 64.3 61 62.3
Lsat_1_v5_gn_9_35481 Lactuca sativa HOM05D000324 ORTHO05D010724 1.4e-07 63.5 56 66.1
Lsat_1_v5_gn_1_5060 Lactuca sativa HOM05D001876 ORTHO05D002002 3.3e-06 58.9 33 87.9


User provided reference genes

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