Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 1.9e-53 212.2 104 100.0
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 7.6e-39 163.7 85 90.6
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 1.7e-38 162.5 94 83.0
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 5.4e-37 157.5 89 83.1
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 5.4e-37 157.5 89 84.3
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 1.2e-36 156.4 91 81.3
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 1.6e-36 156.0 89 82.0
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 2.1e-36 155.6 89 82.0
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.7e-36 155.2 89 82.0
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.7e-36 155.2 93 77.4
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 2.7e-36 155.2 89 82.0
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 2.7e-36 155.2 89 80.9
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 6.0e-36 154.1 93 78.5
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 6.0e-36 154.1 93 78.5
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 6.0e-36 154.1 93 78.5
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 6.0e-36 154.1 89 80.9
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 1.0e-35 153.3 89 79.8
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 1.0e-35 153.3 89 79.8
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 1.0e-35 153.3 93 78.5
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.3e-35 152.9 93 79.6
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 1.3e-35 152.9 89 79.8
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.3e-35 152.9 89 80.9
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.3e-35 152.9 89 80.9
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 1.3e-35 152.9 90 78.9
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 1.3e-35 152.9 89 79.8
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 1.8e-35 152.5 88 79.5
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 1.8e-35 152.5 89 77.5
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.8e-35 152.5 85 84.7
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.8e-35 152.5 85 84.7
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 1.8e-35 152.5 89 78.7
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 1.8e-35 152.5 92 79.3
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 2.3e-35 152.1 89 80.9
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 2.3e-35 152.1 93 78.5
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 3.0e-35 151.8 89 79.8
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 3.9e-35 151.4 89 79.8
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 5.1e-35 151.0 89 79.8
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 6.7e-35 150.6 89 79.8
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 6.7e-35 150.6 85 83.5
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 8.7e-35 150.2 89 79.8
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 8.7e-35 150.2 89 78.7
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 1.1e-34 149.8 84 82.1
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 1.1e-34 149.8 85 81.2
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 1.1e-34 149.8 85 81.2
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 1.5e-34 149.4 92 78.3
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 1.5e-34 149.4 92 78.3
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 1.5e-34 149.4 89 79.8
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 1.5e-34 149.4 89 78.7
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 1.5e-34 149.4 85 82.4
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 1.9e-34 149.1 85 81.2
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.9e-34 149.1 85 81.2
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 1.9e-34 149.1 83 84.3
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 1.9e-34 149.1 85 81.2
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 2.5e-34 148.7 92 77.2
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 2.5e-34 148.7 89 78.7
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 3.3e-34 148.3 89 76.4
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 4.3e-34 147.9 88 76.1
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 5.6e-34 147.5 93 76.3
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 7.4e-34 147.1 89 76.4
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 7.4e-34 147.1 89 77.5
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 7.4e-34 147.1 89 77.5
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 9.6e-34 146.7 89 76.4
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 9.6e-34 146.7 89 76.4
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 9.6e-34 146.7 89 76.4
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 9.6e-34 146.7 89 76.4
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 1.6e-33 146.0 89 76.4
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 1.6e-33 146.0 89 76.4
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 2.1e-33 145.6 89 76.4
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 2.1e-33 145.6 89 76.4
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 2.1e-33 145.6 94 77.7
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 3.7e-33 144.8 92 77.2
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 4.8e-33 144.4 85 78.8
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 6.2e-33 144.1 84 79.8
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 6.2e-33 144.1 90 72.2
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 8.1e-33 143.7 89 74.2
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 1.1e-32 143.3 90 72.2
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 1.1e-32 143.3 92 76.1
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 1.1e-32 143.3 90 72.2
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 1.1e-32 143.3 85 75.3
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 1.4e-32 142.9 89 74.2
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 1.4e-32 142.9 89 76.4
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 2.4e-32 142.1 90 71.1
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 4.0e-32 141.4 85 77.6
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 4.0e-32 141.4 89 76.4
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 6.9e-32 140.6 85 77.6
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 9.0e-32 140.2 89 75.3
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 1.2e-31 139.8 89 71.9
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.2e-31 139.8 89 75.3
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 3.4e-31 138.3 116 61.2
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 3.4e-31 138.3 90 70.0
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 4.5e-31 137.9 89 74.2
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 4.5e-31 137.9 89 74.2
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 7.6e-31 137.1 84 77.4
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 7.6e-31 137.1 84 77.4
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 7.6e-31 137.1 84 77.4
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 7.6e-31 137.1 84 77.4
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.7e-30 136.0 84 76.2
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 3.8e-30 134.8 75 86.7
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 4.9e-30 134.4 81 75.3
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 7.1e-29 130.6 82 74.4
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 3.5e-28 128.3 78 76.9
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 7.4e-26 120.6 64 82.8
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 4.8e-25 117.9 85 68.2
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 1.1e-24 116.7 73 78.1
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 5.8e-23 110.9 93 61.3
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 1.0e-22 110.2 72 75.0
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 1.3e-22 109.8 68 77.9
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 1.7e-22 109.4 73 72.6
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 2.2e-22 109.0 71 69.0
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 2.2e-22 109.0 68 76.5
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 3.8e-22 108.2 68 76.5
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 6.5e-22 107.5 71 74.6
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 1.9e-21 105.9 69 66.7
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 2.5e-21 105.5 102 56.9
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 7.2e-21 104.0 68 72.1
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 7.2e-21 104.0 86 55.8
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 3.5e-20 101.7 85 54.1
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 4.6e-20 101.3 89 59.6
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 4.6e-20 101.3 89 59.6
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 7.9e-20 100.5 89 59.6
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.0e-19 100.1 67 68.7
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 6.7e-19 97.4 64 70.3
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 1.1e-16 90.1 85 51.8
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 5.9e-15 84.3 45 80.0
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 4.2e-13 78.2 48 75.0
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.7e-12 75.5 53 69.8
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 4.6e-12 74.7 48 77.1
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 7.4e-10 67.4 50 60.0
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 1.3e-09 66.6 41 73.2


User provided reference genes

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