Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 1.0e-265 919.5 446 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 5.3e-105 385.6 462 44.8
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 8.4e-103 378.3 443 47.2
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 4.0e-97 359.4 423 43.7
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 1.4e-94 350.9 421 44.7
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 3.5e-93 346.3 419 44.4
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 7.9e-93 345.1 421 42.8
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 1.0e-92 344.7 425 43.8
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 1.8e-92 344.0 425 43.5
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.3e-92 343.6 431 42.7
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 8.7e-92 341.7 422 43.4
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 8.7e-92 341.7 418 41.9
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 1.1e-91 341.3 430 42.6
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 1.1e-91 341.3 425 42.4
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 1.5e-91 340.9 422 43.4
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 3.3e-91 339.7 419 45.1
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 4.3e-91 339.3 425 43.3
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 5.7e-91 339.0 425 41.6
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 5.7e-91 339.0 426 41.8
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 7.4e-91 338.6 420 42.9
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 9.7e-91 338.2 419 43.0
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 1.3e-90 337.8 427 42.4
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 1.6e-90 337.4 422 42.2
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 1.6e-90 337.4 423 40.9
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.2e-90 337.0 428 42.5
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 2.2e-90 337.0 424 41.7
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 2.8e-90 336.7 422 42.2
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 2.8e-90 336.7 428 44.4
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 3.7e-90 336.3 426 43.4
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 4.8e-90 335.9 429 42.2
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 6.3e-90 335.5 426 42.3
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 1.1e-89 334.7 426 43.2
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 1.4e-89 334.3 419 43.9
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 1.8e-89 334.0 422 43.4
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 2.4e-89 333.6 428 41.8
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 2.4e-89 333.6 426 43.9
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 2.4e-89 333.6 420 43.6
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 3.1e-89 333.2 436 42.2
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 3.1e-89 333.2 424 43.6
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 4.1e-89 332.8 429 41.5
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.9e-89 332.0 428 42.8
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 6.9e-89 332.0 420 44.0
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 6.9e-89 332.0 427 42.2
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 9.0e-89 331.6 434 42.9
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 9.0e-89 331.6 420 42.9
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 1.5e-88 330.9 424 41.5
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 3.4e-88 329.7 424 42.7
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 3.4e-88 329.7 436 41.7
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 7.7e-88 328.6 423 43.7
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 1.3e-87 327.8 425 43.3
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 5.0e-87 325.9 419 42.0
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.1e-86 324.7 420 41.2
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 1.1e-86 324.7 420 41.2
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.4e-86 324.3 435 42.3
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.4e-86 324.3 453 42.4
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 1.4e-86 324.3 419 41.3
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 1.9e-86 323.9 420 44.3
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 1.9e-86 323.9 428 40.4
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 2.5e-86 323.6 434 42.2
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 3.2e-86 323.2 424 39.4
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 4.2e-86 322.8 422 41.7
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 9.4e-86 321.6 429 41.7
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 1.6e-85 320.9 419 40.6
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 1.6e-85 320.9 421 39.9
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.1e-85 320.5 436 40.4
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.7e-85 320.1 419 41.3
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 4.6e-85 319.3 418 41.6
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 1.8e-84 317.4 419 40.8
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 3.0e-84 316.6 419 39.1
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 3.0e-84 316.6 433 40.0
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 3.0e-84 316.6 419 40.1
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 3.9e-84 316.2 419 41.3
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 3.9e-84 316.2 419 43.0
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 5.1e-84 315.8 421 39.4
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 6.7e-84 315.5 421 39.7
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 8.8e-84 315.1 419 41.5
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 8.8e-84 315.1 420 40.5
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 1.1e-83 314.7 420 41.4
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 2.5e-83 313.5 421 41.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 2.5e-83 313.5 421 41.1
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.5e-83 313.5 419 41.8
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 3.3e-83 313.2 421 39.4
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 7.4e-83 312.0 420 40.0
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 1.7e-82 310.8 311 49.2
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 1.7e-82 310.8 420 41.0
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 1.7e-82 310.8 423 40.7
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 2.2e-82 310.5 421 39.0
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 4.8e-82 309.3 423 41.1
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.1e-81 308.1 419 40.3
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 1.1e-81 308.1 419 39.6
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 4.1e-81 306.2 421 39.7
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 1.2e-80 304.7 427 38.6
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 7.7e-80 302.0 388 42.5
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 1.0e-79 301.6 420 38.6
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 2.9e-79 300.1 307 48.5
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 2.9e-79 300.1 429 38.0
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 5.5e-78 295.8 499 35.9
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 7.2e-78 295.4 464 36.4
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 2.1e-77 293.9 306 47.7
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 3.0e-76 290.0 440 37.0
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 2.0e-75 287.3 254 53.1
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 2.6e-75 287.0 541 32.9
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 2.8e-74 283.5 394 39.8
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 3.8e-71 273.1 422 36.7
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 2.1e-69 267.3 171 69.0
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 4.7e-69 266.2 426 38.0
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 6.1e-69 265.8 253 50.6
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 6.7e-68 262.3 171 67.3
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.7e-66 257.7 171 65.5
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 6.5e-63 245.7 156 67.9
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 1.5e-62 244.6 417 35.0
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 6.1e-61 239.2 426 34.7
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 5.7e-59 232.6 400 34.8
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 1.4e-57 228.0 129 78.3
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.2e-56 224.9 126 77.0
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 5.9e-56 222.6 350 37.4
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 1.0e-55 221.9 356 36.0
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 5.4e-41 172.9 126 59.5
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 6.8e-36 156.0 224 38.8
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 6.8e-36 156.0 224 38.8
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 6.2e-29 132.9 424 26.4
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 4.0e-28 130.2 83 66.3
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 3.7e-26 123.6 297 28.3
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 4.9e-26 123.2 75 74.7
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.2e-21 108.6 188 35.6
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 2.5e-14 84.3 212 26.4
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.4e-11 73.9 103 36.9
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 6.4e-10 69.7 93 34.4
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 6.6e-07 59.7 269 21.6
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 6.6e-07 59.7 269 21.6
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.5e-06 58.5 108 30.6


User provided reference genes

Program Settings