Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0015s0060 Marchantia polymorpha HOM05D004008 ORTHO05D005383 1.1e-226 789.6 405 100.0
Pp3c6_15990 Physcomitrium patens HOM05D004008 ORTHO05D005383 2.4e-144 516.2 355 75.5
Pp3c15_6300 Physcomitrium patens HOM05D004008 ORTHO05D005383 6.4e-142 508.1 340 77.6
CBR_g48425 Chara braunii HOM05D004008 ORTHO05D005383 7.1e-141 504.6 417 65.0
Pp3c5_16770 Physcomitrium patens HOM05D004008 ORTHO05D005383 1.2e-140 503.8 325 78.8
ATR0763G059 Amborella trichopoda HOM05D004008 ORTHO05D005383 6.2e-137 491.5 321 76.3
Migut.M01552 Erythranthe guttata HOM05D004008 ORTHO05D005383 6.2e-137 491.5 335 74.6
Zm00001eb207370 Zea mays HOM05D004008 ORTHO05D005383 4.0e-136 488.8 340 72.1
PSO541G2232 Papaver somniferum HOM05D004008 ORTHO05D005383 1.5e-135 486.9 326 74.2
PSO675G0755 Papaver somniferum HOM05D004008 ORTHO05D005383 1.5e-135 486.9 326 74.5
unitig_21.g20251 Utricularia gibba HOM05D004008 ORTHO05D005383 2.6e-135 486.1 322 74.8
Hma1.2p1_0334F.1_g128730 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 3.4e-135 485.7 372 66.9
HPP92_002271 Vanilla planifolia HOM05D004008 ORTHO05D005383 5.8e-135 485.0 343 71.7
Os02g0168800 Oryza sativa ssp. japonica HOM05D004008 ORTHO05D005383 1.3e-134 483.8 340 73.2
QL12p007515 Quercus lobata HOM05D004008 ORTHO05D005383 2.2e-134 483.0 347 70.3
MBI18_g03839_MAGBIO Magnolia biondii HOM05D004008 ORTHO05D005383 2.9e-134 482.6 330 73.6
CDE05G3126 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 6.4e-134 481.5 322 74.5
Sed0006741 Sechium edule HOM05D004008 ORTHO05D005383 6.4e-134 481.5 326 74.5
Aqoxy6G00207 Aquilegia oxysepala HOM05D004008 ORTHO05D005383 8.4e-134 481.1 357 69.7
SalBow8G2118 Salvia bowleyana HOM05D004008 ORTHO05D005383 8.4e-134 481.1 332 72.0
AL6G18680 Arabidopsis lyrata HOM05D004008 ORTHO05D005383 1.4e-133 480.3 384 65.9
TAR626G0539 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.4e-133 480.3 322 73.3
TAR626G1776 Trochodendron aralioides HOM05D004008 ORTHO05D005383 1.4e-133 480.3 322 73.3
CsaV3_3G031800 Cucumis sativus L. HOM05D004008 ORTHO05D005383 1.9e-133 479.9 326 74.2
AT5G08280 Arabidopsis thaliana HOM05D004008 ORTHO05D005383 2.4e-133 479.6 384 65.9
MSTRG.13067 Avicennia marina HOM05D004008 ORTHO05D005383 2.4e-133 479.6 322 74.2
Oeu052004.1 Olea europaea HOM05D004008 ORTHO05D005383 3.2e-133 479.2 332 72.6
Psat7g172760 Pisum sativum HOM05D004008 ORTHO05D005383 4.2e-133 478.8 326 74.2
arahy.Tifrunner.gnm1.ann1.6Z73IP Arachis hypogaea HOM05D004008 ORTHO05D005383 5.4e-133 478.4 358 68.7
CDE02G2123 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 5.4e-133 478.4 322 74.5
CARHR204850 Cardamine hirsuta HOM05D004008 ORTHO05D005383 9.3e-133 477.6 334 73.4
CDE11G0020 Ceratophyllum demersum HOM05D004008 ORTHO05D005383 1.2e-132 477.2 334 71.3
Migut.H01689 Erythranthe guttata HOM05D004008 ORTHO05D005383 1.2e-132 477.2 324 74.1
Glyma.11G094700 Glycine max HOM05D004008 ORTHO05D005383 1.2e-132 477.2 335 72.5
Actinidia12791 Actinidia chinensis HOM05D004008 ORTHO05D005383 1.6e-132 476.9 352 69.0
MSTRG.14544 Avicennia marina HOM05D004008 ORTHO05D005383 1.6e-132 476.9 327 73.1
Lj1A905T43 Lonicera japonica HOM05D004008 ORTHO05D005383 2.1e-132 476.5 358 68.4
THA.LOC104800860 Tarenaya hassleriana HOM05D004008 ORTHO05D005383 2.1e-132 476.5 340 71.8
Haze_11762 Corylus avellana HOM05D004008 ORTHO05D005383 3.5e-132 475.7 360 68.1
Medtr4g076600 Medicago truncatula HOM05D004008 ORTHO05D005383 3.5e-132 475.7 326 73.6
Hma1.2p1_0637F.1_g193530 Hydrangea macrophylla HOM05D004008 ORTHO05D005383 4.6e-132 475.3 337 70.3
CANSAT78G1304 Cannabis sativa HOM05D004008 ORTHO05D005383 6.0e-132 474.9 326 73.3
Glyma.12G021100 Glycine max HOM05D004008 ORTHO05D005383 7.8e-132 474.6 338 71.3
Lsat_1_v5_gn_7_112100 Lactuca sativa HOM05D004008 ORTHO05D005383 7.8e-132 474.6 322 73.6
Gohir.A03G165100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.3e-131 473.8 310 74.8
GSVIVG01002505001 Vitis vinifera HOM05D004008 ORTHO05D005383 1.3e-131 473.8 326 74.5
Sc10g0004580 Simmondsia chinensis HOM05D004008 ORTHO05D005383 3.0e-131 472.6 336 72.6
Carub.0006s0716 Capsella rubella HOM05D004008 ORTHO05D005383 3.9e-131 472.2 384 64.8
Cpa.g.sc43.43 Carica papaya HOM05D004008 ORTHO05D005383 3.9e-131 472.2 341 70.4
Cfa008746 Carpinus fangiana HOM05D004008 ORTHO05D005383 3.9e-131 472.2 360 67.2
Ca_26057_v3 Cicer arietinum L. HOM05D004008 ORTHO05D005383 3.9e-131 472.2 326 73.6
ClCG10G012060 Citrullus lanatus HOM05D004008 ORTHO05D005383 3.9e-131 472.2 340 71.5
Eucgr.C00142 Eucalyptus grandis HOM05D004008 ORTHO05D005383 3.9e-131 472.2 335 71.0
TPR.G11683 Trifolium pratense HOM05D004008 ORTHO05D005383 3.9e-131 472.2 326 73.3
Manes.11G103000 Manihot esculenta HOM05D004008 ORTHO05D005383 6.6e-131 471.5 341 70.7
VMungo1215G1012 Vigna mungo HOM05D004008 ORTHO05D005383 6.6e-131 471.5 327 72.8
Dinv19616 Davidia involucrata HOM05D004008 ORTHO05D005383 8.7e-131 471.1 334 71.9
Thhalv10013814m.g Eutrema salsugineum HOM05D004008 ORTHO05D005383 8.7e-131 471.1 338 71.6
LjContig00222g0009052 Lotus japonicus HOM05D004008 ORTHO05D005383 8.7e-131 471.1 338 71.3
CSS0024885 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 1.1e-130 470.7 329 72.3
RcHm_v2.0_Chr4g0446801 Rosa chinensis HOM05D004008 ORTHO05D005383 1.1e-130 470.7 340 69.7
CiPaw.01G129500 Carya illinoinensis HOM05D004008 ORTHO05D005383 1.9e-130 469.9 336 71.4
HanXRQChr05g0153591 Helianthus annuus HOM05D004008 ORTHO05D005383 1.9e-130 469.9 361 67.6
Phvul.011G177100 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 1.9e-130 469.9 326 72.1
Glyma.01G227400 Glycine max HOM05D004008 ORTHO05D005383 2.5e-130 469.5 325 72.9
Gorai.012G134300 Gossypium raimondii HOM05D004008 ORTHO05D005383 2.5e-130 469.5 309 75.1
Potri.007G072500 Populus trichocarpa HOM05D004008 ORTHO05D005383 2.5e-130 469.5 332 70.5
Prupe.1G348400 Prunus persica HOM05D004008 ORTHO05D005383 2.5e-130 469.5 341 69.8
BcaNung05097 Brassica carinata HOM05D004008 ORTHO05D005383 3.3e-130 469.2 344 69.8
Dinv42507 Davidia involucrata HOM05D004008 ORTHO05D005383 3.3e-130 469.2 322 72.0
Aa31LG3G18290 Aethionema arabicum HOM05D004008 ORTHO05D005383 4.3e-130 468.8 340 71.2
COL.COLO4_33043 Corchorus olitorius HOM05D004008 ORTHO05D005383 4.3e-130 468.8 325 73.2
Gorai.005G211000 Gossypium raimondii HOM05D004008 ORTHO05D005383 4.3e-130 468.8 310 74.2
Zm00001eb233020 Zea mays HOM05D004008 ORTHO05D005383 4.3e-130 468.8 299 77.3
Cc05_g16090 Coffea canephora HOM05D004008 ORTHO05D005383 5.6e-130 468.4 314 72.6
Potri.005G091600 Populus trichocarpa HOM05D004008 ORTHO05D005383 5.6e-130 468.4 332 70.5
HanXRQChr01g0007731 Helianthus annuus HOM05D004008 ORTHO05D005383 9.6e-130 467.6 351 67.5
BraA02t04947Z Brassica rapa HOM05D004008 ORTHO05D005383 1.3e-129 467.2 335 71.3
Gohir.D02G188300 Gossypium hirsutum HOM05D004008 ORTHO05D005383 1.3e-129 467.2 310 73.9
Rhsim06G0054400 Rhododendron simsii HOM05D004008 ORTHO05D005383 2.1e-129 466.5 319 73.4
arahy.Tifrunner.gnm1.ann1.416KLQ Arachis hypogaea HOM05D004008 ORTHO05D005383 2.8e-129 466.1 353 68.3
C09p68660 Brassica napus HOM05D004008 ORTHO05D005383 2.8e-129 466.1 343 69.7
Thecc.02G158900 Theobroma cacao HOM05D004008 ORTHO05D005383 2.8e-129 466.1 310 73.9
A10p28400 Brassica napus HOM05D004008 ORTHO05D005383 3.6e-129 465.7 343 69.4
C02p03470 Brassica napus HOM05D004008 ORTHO05D005383 3.6e-129 465.7 335 71.0
BraA10t44887Z Brassica rapa HOM05D004008 ORTHO05D005383 3.6e-129 465.7 343 69.4
Sp6g34680 Schrenkiella parvula HOM05D004008 ORTHO05D005383 3.6e-129 465.7 340 70.0
arahy.Tifrunner.gnm1.ann1.KXDS8S Arachis hypogaea HOM05D004008 ORTHO05D005383 4.8e-129 465.3 325 72.3
Duzib132G0865 Durio zibethinus HOM05D004008 ORTHO05D005383 4.8e-129 465.3 309 73.8
A03p03710 Brassica napus HOM05D004008 ORTHO05D005383 6.2e-129 464.9 335 71.3
BraA03t09719Z Brassica rapa HOM05D004008 ORTHO05D005383 6.2e-129 464.9 335 71.3
Phvul.002G034500 Phaseolus vulgaris HOM05D004008 ORTHO05D005383 6.2e-129 464.9 325 71.7
FAN07G1552 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.1e-128 464.2 324 71.3
Sopen07g034650 Solanum pennellii HOM05D004008 ORTHO05D005383 1.4e-128 463.8 324 71.3
BcaB01g05618 Brassica carinata HOM05D004008 ORTHO05D005383 2.4e-128 463.0 342 69.9
BolC3t12952H Brassica oleracea HOM05D004008 ORTHO05D005383 2.4e-128 463.0 342 69.9
Ciclev10031858m.g Citrus clementina HOM05D004008 ORTHO05D005383 2.4e-128 463.0 325 71.4
RcHm_v2.0_Chr1g0330101 Rosa chinensis HOM05D004008 ORTHO05D005383 2.4e-128 463.0 340 68.2
BolC2t06308H Brassica oleracea HOM05D004008 ORTHO05D005383 3.1e-128 462.6 335 70.4
CAN.G943.40 Capsicum annuum HOM05D004008 ORTHO05D005383 3.1e-128 462.6 324 71.0
Duzib248G1235 Durio zibethinus HOM05D004008 ORTHO05D005383 3.1e-128 462.6 326 70.2
MD16G1003400 Malus domestica HOM05D004008 ORTHO05D005383 3.1e-128 462.6 387 62.8
Nitab4.5_0001791g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.1e-128 462.6 322 71.4
Solyc07g066470.3 Solanum lycopersicum HOM05D004008 ORTHO05D005383 3.1e-128 462.6 324 71.0
PGSC0003DMG400022126 Solanum tuberosum HOM05D004008 ORTHO05D005383 4.0e-128 462.2 324 71.0
SGA_v2.0_scaffold186G40215 Striga asiatica HOM05D004008 ORTHO05D005383 4.0e-128 462.2 351 68.1
TWI12G0055 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 4.0e-128 462.2 326 71.8
C03p04200 Brassica napus HOM05D004008 ORTHO05D005383 5.3e-128 461.8 343 69.1
BolC9t59612H Brassica oleracea HOM05D004008 ORTHO05D005383 5.3e-128 461.8 343 69.1
ECA248G2166 Erigeron canadensis HOM05D004008 ORTHO05D005383 5.3e-128 461.8 315 73.3
PGR142G0362 Punica granatum HOM05D004008 ORTHO05D005383 6.9e-128 461.5 325 71.7
Lalb_Chr09g0320431 Lupinus albus HOM05D004008 ORTHO05D005383 1.2e-127 460.7 332 70.5
TWI75G1091 Tripterygium wilfordii HOM05D004008 ORTHO05D005383 1.2e-127 460.7 325 71.1
FAN12G0417 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.5e-127 460.3 324 70.7
Peaxi162Scf00452g00831 Petunia axillaris HOM05D004008 ORTHO05D005383 1.5e-127 460.3 321 70.1
VMungo1127G2017 Vigna mungo HOM05D004008 ORTHO05D005383 1.5e-127 460.3 324 72.2
MD13G1004100 Malus domestica HOM05D004008 ORTHO05D005383 2.6e-127 459.5 324 70.7
Nitab4.5_0000134g0020 Nicotiana tabacum HOM05D004008 ORTHO05D005383 5.8e-127 458.4 323 71.2
SMO364G0819 Selaginella moellendorffii HOM05D004008 ORTHO05D005383 5.8e-127 458.4 339 69.9
EL10Ac2g02758 Beta vulgaris HOM05D004008 ORTHO05D005383 7.6e-127 458.0 311 74.0
Peaxi162Scf00006g00139 Petunia axillaris HOM05D004008 ORTHO05D005383 9.9e-127 457.6 355 66.8
FvH4_7g04700 Fragaria vesca HOM05D004008 ORTHO05D005383 1.3e-126 457.2 324 69.8
FAN10G2193 Fragaria x ananassa HOM05D004008 ORTHO05D005383 1.3e-126 457.2 324 69.8
Ah.10g029970 Amaranthus hybridus HOM05D004008 ORTHO05D005383 3.8e-126 455.7 325 71.4
Hund13394 Selenicereus undatus HOM05D004008 ORTHO05D005383 3.8e-126 455.7 332 70.8
FAN03G0704 Fragaria x ananassa HOM05D004008 ORTHO05D005383 2.4e-125 453.0 321 69.8
FAN17G0554 Fragaria x ananassa HOM05D004008 ORTHO05D005383 4.2e-125 452.2 300 73.7
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.1e-125 451.4 314 70.1
Gohir.A04G108500 Gossypium hirsutum HOM05D004008 ORTHO05D005383 9.3e-125 451.1 309 73.1
Sabra07G0061100 Salix brachista HOM05D004008 ORTHO05D005383 1.2e-124 450.7 299 74.2
SEGI_21965 Sequoiadendron giganteum HOM05D004008 ORTHO05D005383 4.6e-124 448.7 298 73.8
AUR62031735 Chenopodium quinoa HOM05D004008 ORTHO05D005383 3.9e-123 445.7 364 64.6
SGA_v2.0_scaffold7G03592 Striga asiatica HOM05D004008 ORTHO05D005383 5.1e-123 445.3 337 68.5
FAN06G1123 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.7e-123 444.5 299 72.2
FAN06G2867 Fragaria x ananassa HOM05D004008 ORTHO05D005383 8.7e-123 444.5 299 72.2
MELO3C024010.2 Cucumis melo HOM05D004008 ORTHO05D005383 4.3e-122 442.2 283 76.7
Cre16.g663900 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D005383 1.3e-121 440.7 323 69.0
AUR62032620 Chenopodium quinoa HOM05D004008 ORTHO05D005383 1.6e-121 440.3 357 64.1
Lj4g0025599 Lotus japonicus HOM05D004008 ORTHO05D005383 2.1e-121 439.9 323 69.7
Sabra05G0076100 Salix brachista HOM05D004008 ORTHO05D005383 4.8e-121 438.7 299 71.9
vmacro11667 Vaccinium macrocarpon HOM05D004008 ORTHO05D005383 8.1e-121 438.0 412 57.5
CSS0025050 Camellia sinensis var. sinensis HOM05D004008 ORTHO05D005383 2.4e-120 436.4 327 68.8
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.1e-120 436.0 359 63.0
MCO01G747 Micromonas commoda HOM05D004008 ORTHO05D005383 2.0e-119 433.3 331 67.7
Gohir.D04G148100 Gossypium hirsutum HOM05D004008 ORTHO05D005383 3.4e-119 432.6 283 74.9
BcaB08g37268 Brassica carinata HOM05D004008 ORTHO05D005383 2.4e-117 426.4 343 65.6
DCAR_013737 Daucus carota HOM05D004008 ORTHO05D005383 4.6e-116 422.2 365 63.6
BcaC03g13214 Brassica carinata HOM05D004008 ORTHO05D005383 1.8e-115 420.2 334 66.2
TAR624G0715 Trochodendron aralioides HOM05D004008 ORTHO05D005383 7.6e-111 404.8 277 74.4
AagrBONN_evm.TU.Sc2ySwM_117.3714 Anthoceros agrestis HOM05D004008 ORTHO05D005383 1.6e-108 397.1 233 88.0
PRCOL_00005560 Prasinoderma coloniale HOM05D004008 ORTHO05D005383 1.9e-101 373.6 291 64.3
Sed0020742 Sechium edule HOM05D004008 ORTHO05D005383 2.0e-95 353.6 246 74.0
Oeu001944.1 Olea europaea HOM05D004008 ORTHO05D005383 2.2e-94 350.1 242 74.8
FvH4_4g37020 Fragaria vesca HOM05D004008 ORTHO05D005383 3.9e-91 339.3 231 74.9
Haze_26918 Corylus avellana HOM05D004008 ORTHO05D163716 6.5e-70 268.9 307 49.8
Nn7g38125 Nelumbo nucifera HOM05D004008 ORTHO05D005383 4.8e-65 252.7 177 72.9
Psat5g025240 Pisum sativum HOM05D004008 ORTHO05D005383 3.5e-63 246.5 272 52.6
arahy.Tifrunner.gnm1.ann1.VI50KN Arachis hypogaea HOM05D004008 ORTHO05D005383 2.3e-62 243.8 193 66.8
Actinidia07354 Actinidia chinensis HOM05D004008 ORTHO05D005383 6.4e-49 199.1 135 67.4
Psat5g278360 Pisum sativum HOM05D004008 ORTHO05D000002 6.4e-41 172.6 173 56.6
Glyma.11G015433 Glycine max HOM05D004008 ORTHO05D005383 2.3e-38 164.1 112 67.9
Cre02.g113850 Chlamydomonas reinhardtii HOM05D004008 ORTHO05D145669 3.9e-38 163.3 299 37.1
BcaC07g39332 Brassica carinata HOM05D004008 ORTHO05D032875 6.2e-36 156.0 178 53.9
C08p23470 Brassica napus HOM05D004008 ORTHO05D032875 6.2e-36 156.0 184 52.7
BolC8t49976H Brassica oleracea HOM05D004008 ORTHO05D032875 6.2e-36 156.0 184 52.7
BcaC08g43816 Brassica carinata HOM05D004008 ORTHO05D013026 2.1e-23 114.4 99 56.6
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.0e-22 112.1 99 56.6
C09p39940 Brassica napus HOM05D004008 ORTHO05D027220 1.0e-22 112.1 99 56.6
C02p56520 Brassica napus HOM05D000109 ORTHO05D000210 3.0e-22 110.5 95 57.9
C03p57930 Brassica napus HOM05D004008 ORTHO05D027220 6.6e-22 109.4 99 55.6
BolC9t56891H Brassica oleracea HOM05D004008 ORTHO05D013026 5.6e-21 106.3 103 52.4
BcaC03g17816 Brassica carinata HOM05D003055 ORTHO05D013026 2.8e-20 104.0 104 50.0
C02p58390 Brassica napus HOM05D003055 ORTHO05D013026 4.0e-19 100.1 103 49.5
BolC3t18065H Brassica oleracea HOM05D003055 ORTHO05D013026 1.3e-14 85.1 64 64.1
Psat6g163360 Pisum sativum HOM05D005575 ORTHO05D000484 5.1e-14 83.2 49 81.6
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 7.3e-13 79.3 61 67.2
TPR.G13755 Trifolium pratense HOM05D004008 ORTHO05D410752 2.8e-12 77.4 67 65.7


User provided reference genes

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