Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 3.5e-178 628.2 334 100.0
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.1e-151 539.3 338 84.9
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 9.9e-149 530.4 335 85.7
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 4.9e-148 528.1 335 84.8
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 2.3e-145 519.2 337 81.0
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.3e-143 513.5 337 79.5
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.2e-141 506.9 337 80.4
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 2.9e-140 502.3 336 79.8
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 1.1e-139 500.4 337 79.2
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.4e-139 500.0 338 79.6
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 2.5e-139 499.2 336 79.2
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 3.2e-139 498.8 338 79.0
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 7.1e-139 497.7 336 78.9
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 9.3e-139 497.3 336 80.1
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.2e-138 496.9 337 79.2
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.2e-138 496.9 337 79.2
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 2.7e-138 495.7 336 78.9
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.7e-138 495.7 337 79.2
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 3.5e-138 495.4 334 79.0
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 4.6e-138 495.0 336 78.6
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 6.0e-138 494.6 337 79.5
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 7.9e-138 494.2 337 79.5
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 7.9e-138 494.2 336 77.7
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.0e-137 493.8 338 77.8
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 1.0e-137 493.8 337 78.6
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.3e-137 493.4 339 78.8
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 1.8e-137 493.0 338 78.1
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.3e-137 492.7 337 78.9
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.3e-137 492.7 337 78.9
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 3.0e-137 492.3 337 78.6
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 3.9e-137 491.9 338 78.1
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 3.9e-137 491.9 352 76.1
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 3.9e-137 491.9 336 77.4
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 5.1e-137 491.5 337 78.9
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 6.7e-137 491.1 337 78.0
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 8.7e-137 490.7 337 78.6
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 1.1e-136 490.3 338 78.4
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.5e-136 490.0 338 78.7
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.9e-136 489.6 336 78.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.9e-136 489.6 337 78.0
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 1.9e-136 489.6 336 77.7
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 2.5e-136 489.2 334 77.8
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 3.3e-136 488.8 337 77.7
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 5.7e-136 488.0 334 78.4
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 7.4e-136 487.6 337 78.3
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.6e-135 486.5 337 78.0
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 1.1e-134 483.8 341 77.4
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.4e-134 483.4 340 77.9
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 2.4e-134 482.6 336 78.0
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 2.4e-134 482.6 338 76.3
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.4e-134 482.6 349 75.6
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 5.3e-134 481.5 338 76.6
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 6.9e-134 481.1 340 76.8
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 9.0e-134 480.7 336 76.2
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 9.0e-134 480.7 336 76.2
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.2e-133 480.3 338 76.6
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 2.6e-133 479.2 337 77.2
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 3.4e-133 478.8 337 76.9
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 3.4e-133 478.8 340 77.4
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 5.8e-133 478.0 339 76.4
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.3e-132 476.9 336 76.2
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.3e-132 476.9 365 73.2
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.3e-132 476.9 372 71.8
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 2.2e-132 476.1 359 73.3
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 3.8e-132 475.3 337 76.9
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 3.8e-132 475.3 337 76.9
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 6.5e-132 474.6 336 77.7
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 8.4e-132 474.2 337 76.6
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 8.4e-132 474.2 337 76.6
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 8.4e-132 474.2 339 77.3
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 8.4e-132 474.2 337 76.3
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 2.5e-131 472.6 329 77.5
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 9.3e-131 470.7 337 74.8
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 2.1e-130 469.5 337 74.8
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 3.5e-130 468.8 337 74.5
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 3.5e-130 468.8 339 76.7
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 6.1e-130 468.0 355 74.1
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 6.1e-130 468.0 355 74.1
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.3e-129 466.8 337 75.1
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 2.3e-129 466.1 337 74.2
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 5.1e-129 464.9 321 78.5
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.9e-128 463.0 344 73.3
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 4.3e-128 461.8 352 72.2
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 3.7e-127 458.8 348 73.0
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 8.2e-127 457.6 338 73.4
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 8.2e-127 457.6 338 73.4
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 2.4e-126 456.1 338 75.4
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 2.4e-126 456.1 338 74.9
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 3.1e-126 455.7 347 72.6
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 4.1e-126 455.3 347 72.6
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 6.9e-126 454.5 330 74.8
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 9.0e-126 454.1 338 74.0
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 2.6e-125 452.6 336 74.1
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 2.2e-124 449.5 321 76.9
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 3.8e-124 448.7 331 74.3
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 3.2e-123 445.7 377 67.4
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.2e-123 445.3 337 74.2
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 9.4e-123 444.1 321 75.1
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.4e-121 440.3 366 67.8
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 3.9e-121 438.7 325 74.8
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 3.9e-121 438.7 325 74.8
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.4e-120 434.5 365 68.2
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.4e-120 434.5 365 68.2
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 4.8e-119 431.8 336 71.4
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 5.9e-117 424.9 336 66.4
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 5.0e-116 421.8 305 77.7
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 6.7e-113 411.4 337 68.8
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 4.8e-111 405.2 284 77.5
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 2.4e-110 402.9 352 66.2
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.7e-108 396.7 275 81.1
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 1.1e-107 394.0 332 68.1
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 3.2e-107 392.5 229 84.3
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 8.2e-103 377.9 516 47.9
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.6e-98 362.5 339 64.9
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 8.8e-97 357.8 274 74.1
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.5e-93 345.9 335 62.7
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 1.4e-89 334.0 321 62.9
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 1.3e-87 327.4 319 63.9
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 2.4e-86 323.2 254 72.8
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 5.4e-86 322.0 382 48.2
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 2.3e-84 316.6 336 58.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 5.7e-80 302.0 329 50.5
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 2.2e-79 300.1 147 95.9
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 7.5e-64 248.4 209 70.3
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.9e-62 243.8 183 68.3
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 9.2e-62 241.5 332 47.0
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.2e-54 216.5 116 89.7
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 7.3e-43 178.7 82 97.6
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 9.6e-43 178.3 166 66.3
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.7e-37 160.2 90 88.9
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.2e-32 144.8 98 78.6
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.8e-28 131.0 90 76.7
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 3.0e-20 103.6 54 92.6
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.5e-19 100.5 99 51.5
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 4.3e-19 99.8 204 29.4
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 9.0e-17 92.0 332 26.5
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 6.5e-15 85.9 64 67.2
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 1.3e-12 78.2 39 87.2
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 6.7e-12 75.9 54 70.4
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 1.1e-11 75.1 41 87.8
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 8.2e-10 68.9 45 71.1
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.1e-09 68.6 78 62.8


User provided reference genes

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