Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 6.3e-202 707.2 354 100.0
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.5e-81 306.6 363 52.1
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 5.3e-76 288.9 364 49.5
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 3.4e-62 243.0 344 46.2
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 7.5e-62 241.9 357 43.7
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.8e-61 240.0 385 42.9
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 3.7e-61 239.6 348 46.0
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 6.3e-61 238.8 354 45.5
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.1e-60 238.0 364 43.7
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 1.4e-60 237.7 360 43.6
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 1.4e-60 237.7 356 43.8
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 2.4e-60 236.9 351 46.2
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 3.1e-60 236.5 354 44.4
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 4.1e-60 236.1 351 45.0
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 7.0e-60 235.3 363 42.4
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.6e-59 234.2 349 43.8
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.0e-59 233.8 352 45.5
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 2.0e-59 233.8 368 43.5
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 2.0e-59 233.8 343 44.6
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.7e-59 233.4 349 43.8
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 4.5e-59 232.6 348 45.1
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 5.9e-59 232.3 365 44.9
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 7.7e-59 231.9 349 44.4
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 7.7e-59 231.9 355 45.1
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.0e-58 231.5 357 43.7
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 1.0e-58 231.5 346 44.5
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 1.0e-58 231.5 349 43.8
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 1.3e-58 231.1 361 44.0
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.3e-58 231.1 357 43.1
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.3e-58 231.1 352 45.2
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.3e-58 231.1 349 43.0
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.7e-58 230.7 357 42.6
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 2.3e-58 230.3 352 44.6
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 2.3e-58 230.3 356 43.5
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 2.9e-58 229.9 357 44.0
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 2.9e-58 229.9 355 42.0
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 2.9e-58 229.9 349 43.0
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 3.8e-58 229.6 354 44.6
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 5.0e-58 229.2 346 43.6
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 5.0e-58 229.2 355 41.4
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 6.6e-58 228.8 357 44.5
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 6.6e-58 228.8 352 43.8
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 8.6e-58 228.4 355 41.4
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 1.1e-57 228.0 368 42.9
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 1.5e-57 227.6 354 45.5
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.9e-57 227.3 356 43.0
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 1.9e-57 227.3 356 43.0
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.9e-57 227.3 355 41.4
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 2.5e-57 226.9 349 45.0
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.5e-57 226.9 352 44.9
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 2.5e-57 226.9 351 42.7
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 2.5e-57 226.9 360 42.2
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 2.5e-57 226.9 352 43.2
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 2.5e-57 226.9 365 43.3
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 3.3e-57 226.5 357 42.9
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 3.3e-57 226.5 354 40.7
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 3.3e-57 226.5 353 43.9
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 3.3e-57 226.5 354 42.7
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 5.5e-57 225.7 355 43.9
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 5.5e-57 225.7 349 44.7
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 7.2e-57 225.3 360 41.7
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 7.2e-57 225.3 363 42.7
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 2.1e-56 223.8 354 43.8
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 2.1e-56 223.8 354 41.5
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 4.7e-56 222.6 350 43.1
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 6.1e-56 222.2 353 41.9
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 6.1e-56 222.2 352 43.8
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 8.0e-56 221.9 354 41.2
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 8.0e-56 221.9 358 42.5
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 1.0e-55 221.5 347 43.5
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 1.8e-55 220.7 356 44.1
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.8e-55 220.7 338 45.6
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 1.8e-55 220.7 354 43.5
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 2.3e-55 220.3 352 41.8
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 3.0e-55 219.9 359 43.2
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 4.0e-55 219.5 354 41.5
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 4.0e-55 219.5 353 42.8
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 5.2e-55 219.2 352 42.0
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 6.8e-55 218.8 363 43.0
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 6.8e-55 218.8 353 41.6
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 6.8e-55 218.8 358 42.7
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 6.8e-55 218.8 391 41.4
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 8.9e-55 218.4 352 42.9
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 8.9e-55 218.4 351 41.9
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.2e-54 218.0 358 43.3
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.0e-54 217.2 353 42.8
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 2.6e-54 216.9 348 43.1
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 2.6e-54 216.9 348 43.1
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.6e-54 216.9 354 42.4
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 3.4e-54 216.5 354 42.4
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 4.4e-54 216.1 364 40.7
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 5.7e-54 215.7 354 43.8
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 5.7e-54 215.7 352 43.2
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 9.8e-54 214.9 353 43.3
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 1.7e-53 214.2 353 43.1
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.7e-53 214.2 358 42.2
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 1.7e-53 214.2 350 43.4
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.8e-53 213.4 350 43.7
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 4.9e-53 212.6 352 41.5
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 8.3e-53 211.8 347 42.7
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 2.4e-52 210.3 359 43.2
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 7.0e-52 208.8 353 40.5
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 4.5e-51 206.1 368 41.3
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 5.9e-51 205.7 352 38.6
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 1.0e-50 204.9 339 40.1
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.7e-50 204.1 297 43.4
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 2.9e-50 203.4 362 40.6
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 3.8e-50 203.0 353 41.1
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.1e-49 201.4 365 38.9
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.1e-49 201.4 365 38.9
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 2.5e-49 200.3 356 39.9
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 4.3e-49 199.5 268 46.3
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 4.3e-49 199.5 346 39.0
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 9.5e-49 198.4 400 37.8
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 3.6e-48 196.4 369 40.4
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 3.6e-48 196.4 349 41.0
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 6.1e-48 195.7 352 37.8
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 1.0e-47 194.9 350 38.9
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 8.9e-47 191.8 346 39.6
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 3.4e-46 189.9 352 37.5
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 2.7e-43 180.3 185 51.4
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 4.0e-39 166.4 361 36.3
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 6.8e-39 165.6 290 38.3
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 4.1e-36 156.4 220 42.7
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 9.2e-36 155.2 189 45.0
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.5e-35 153.3 217 44.2
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 2.3e-34 150.6 186 46.8
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 1.6e-32 144.4 266 37.2
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 7.5e-30 135.6 355 33.2
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 3.7e-29 133.3 181 38.7
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 4.9e-29 132.9 246 40.7
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 6.4e-29 132.5 181 45.3
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 1.9e-28 131.0 202 40.1
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 3.0e-26 123.6 163 47.9
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.1e-23 115.2 342 34.5
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 1.4e-23 114.8 223 38.6
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 5.8e-22 109.4 129 50.4
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 3.8e-21 106.7 145 42.1
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.0e-18 97.1 87 51.7
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 4.3e-17 93.2 150 35.3
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 6.2e-16 89.4 81 46.9
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 2.4e-15 87.4 79 45.6
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.1e-15 87.0 81 45.7
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 9.0e-15 85.5 104 42.3
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 1.9e-12 77.8 164 35.4
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 3.2e-12 77.0 353 26.9
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 9.3e-12 75.5 56 60.7
MCO07G475 Micromonas commoda HOM05D004877 ORTHO05D005942 1.0e-10 72.0 187 30.5
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.9e-09 67.8 66 45.5
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.3e-08 65.1 55 52.7
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 2.6e-06 57.4 87 39.1


User provided reference genes

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